RNA id: XM_007237033.2


Basic Information

Item Value
RNA id XM_007237033.2
length 1750
RNA type mRNA
GC content 0.51
exon number 8
gene id mmp23b
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46827968 ~ 46851232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCCTGTCACACAGTGATCGCCGGTGGAGTAACGTGATACCAGAAGGCACACATCCAGAGTTAGTGGAGGAAAAAgccaagaaagagagagagagaaaaccagAGCGAGCAGCTCCACAGCACGGAGCCCTGTCTGCTCGTCCCATCAGCCGCACTCATCCCGAGCCCTGCACGCCCTCCCGGCGCTAATGGAGATCCGGCGGAGCGGAGAGGAGTAGATGCCGGAGGAGACCCGCGCCATGGCGAGCTCCAGCCCAGCGCAGCGCGGCGGCTTAGCCCGGGTGGCCGTGCTCGGGCTCTGCTTAGCGGCGCTGCACGGAGCCTCAGCCCTCCCTCTGTGGAAAACCGAGGAAGAAGCTCACATTTCTGGTGTTTTGATCATTGGGATTCGTAAAGATGCCCACTCCCACGTGCTTCACCTTTCCAGGAACAAACGCTACACCCTGACCCCAGAGAAGCTGAAGTGGGACAAATTCAAGCTAACCTACAAACTGCTGTCATTTCCAAGGAACCTGATGAATGCCAGCGACACGCGCAGAGGCATCGCCAAAGCTTTCTCTATGTGGAGCGACGTGTCGCCTTTCAGCTTCAGAGAGGTGCCTGCTGATCAGGAGGCTGACATTAAAATCGGCTTCTACCCTGTAAACCATACGGACTGTCTGCAGTCCTACCTGCATCACTGTTTCGACGGCATCACCGGCGAGCTGGCCCACGCCTTCTTCCCCCCGACCGGAGAGATCCACTTTGACGATGATGAATACTGGATTCTGGGGAACATGCGCTTCAGCTGGAAGAAAGGGGTTTGGTTGACTGACCTGGTGCATGTAGCAGCTCATGAAATCGGTCATGTGTTGGGACTGATGCACTCCCAGAACCCGCAAGCCATAATGCATCTTAACGCCACACTGACGGGACGCAAACTCATTACGCAGGACGACGTCTGGGGCGTTCATCGACTCTACGGATGTTTGGATAGATTATTTATCTGTCCCGCCTGGGCCAGGAAAGGCTACTGCGAAAGCAAAAGAAAGCTCATGCAGAAGCATTGCCCTCACAGCTGTGACTTCTGTTATGCATTTCCTTTTCCCACCGTCGCCCCAACTGCAGCACCGCCACGGACCAAACACAAGCTTGTTGCTGAGGGGAAGAAACTCACCTTCCGCTGTGGAAAGAAAATTGCTGCGAAGCAAGGCAAAGTGTACTGGTACAAAGATGGCGAGTTGCTGGAATACTCTCACCCTGGCTACATCTCCCTGAAGAACGACCACATCAGCATTGTGGCGAATGCAATCAATGAGGGTACATATACCTGCATCGTGAGGAAGAAGAACAAGGTCTTAACAAACTATTCGTGGAAGGTTCGAGTGCGCTTCTGAGGGCTGGAATGGACTTAATAACTTTAACCTTCAATACAAAGAAGCACAGGGTAACACCAGTAACTGGTTCTGTCCCAAAGCAGTTCAGTTCCCTCCTGATCTAATGAGCTCTGCCATGCTGTGATCAAGTGCCTGCACTGCAGAAAAGAAGGAGGTGGAACGATGCGATGAGATGCACCAAAGTCTTAAAAAAATCATCACAGCACCACATGAAACCTCACTCACTTGGGCACATATTCCACTAGATTTATACCCCAAATTACCTACCAAATGGTTTGATGTCAGGGTTattctgtttgtatttttatatggtgcttttttttctttaggtgGCAAATAAAAACTTATTCTGTGACACTTCTGTGCAAGTTTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79895 lncRNA upstream 3282 46819166 ~ 46824686 (+) True G59259
XR_002650119.1 lncRNA upstream 137008 46690257 ~ 46690960 (+) True LOC111192739
TU79864 lncRNA upstream 139941 46687261 ~ 46688027 (+) True G59243
TU79862 lncRNA upstream 142930 46684649 ~ 46685038 (+) True G59241
TU79848 lncRNA upstream 220596 46600448 ~ 46607372 (+) False G59232
TU79889 lncRNA downstream 1132 46852364 ~ 46860603 (+) False G59257
TU79912 lncRNA downstream 32118 46883350 ~ 46887023 (+) True G59276
TU79924 lncRNA downstream 75447 46926679 ~ 46931683 (+) True G59285
TU80180 lncRNA downstream 145293 46996525 ~ 46998150 (+) True G59465
TU80261 lncRNA downstream 358369 47209601 ~ 47213248 (+) True G59525
XM_022670967.1 mRNA upstream 130453 46696479 ~ 46697515 (+) True LOC111192740
XM_022670965.1 mRNA upstream 404734 46405754 ~ 46423234 (+) True LOC111192738
XM_022670771.1 mRNA upstream 641068 46122861 ~ 46186900 (+) False LOC111192690
XM_022670772.1 mRNA upstream 641074 46123124 ~ 46186894 (+) True LOC111192690
XM_022670759.1 mRNA upstream 757686 46060683 ~ 46070282 (+) True LOC103044102
XM_007237040.3 mRNA downstream 57050 46908282 ~ 46923292 (+) True LOC103022408
XM_007237031.3 mRNA downstream 105874 46957106 ~ 46967434 (+) True LOC103046622
XM_007237029.2 mRNA downstream 137744 46988976 ~ 47024024 (+) True LOC103046011
XM_015602375.2 mRNA downstream 345429 47196661 ~ 47198250 (+) True LOC103040284
XM_022670801.1 mRNA downstream 646382 47497614 ~ 47593327 (+) True cfap74
TU79487 other upstream 1037814 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 1961130 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 2227008 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 2227008 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 2244050 44579126 ~ 44583918 (+) False LOC103028384
TU79888 other downstream 1132 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 2018935 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 2146928 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 2572284 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 3788262 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile