RNA id: XM_022670626.1


Basic Information

Item Value
RNA id XM_022670626.1
length 2432
RNA type mRNA
GC content 0.44
exon number 15
gene id hnrnpk
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39257525 ~ 39267633 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCAGATCTTGTGGGTGCAATTACTGCCAGACAAAAGTGACCTAACCAATTTGGCACATAATCTGtgAGGGACTGTTGGGCAGTTCATCACTGCAGGTAGTGTAGACCGATAATGGACACAGAAAACGATCAGCAGGAAGAGGAGACCACTTTCAGCCCGGAAAGCAACGGCAAGCGTCCTGCGCAGGATATCGATGACAAGCCGGACTATAAACGCTCTAGAAAGTCTGATGAAATGGTGGAGCTGCGGGTATTGCTCCAGAGCAAAAATGCAGGAGCTGTTATTGGAAAGGCAGGCAAGAACATTAAAGCTCTGCGCACAGATGATCCTGAGCATCACTGCAGAAATCCCTATTGTGGCTGAAATACTGCTAAAAATCATCCCTACATTAGAAGAGTATCAGCATCATAAAGGTGTGGACTTTGACTGCGAGTTGAGGATCCTGATCCATCAGAGTTTAGCAGGCAGCATTATTGGTGTAAAGGGGGCCAAAATTAAAGAGCTTCGTGAGAACACCCAGACAACCATCAAGCTGTTCCAGGAATGCTGCCCTCAGTCCACTGACCGTGTAGTGTTAGTGGGGGGCAAGGCAGAGAAGGTTGTTGAGTGTATTAAGACCATGCTGGAACTCATAAATGagGCACCCATCAAAGGCCGTGCCCAGCAGTATGATCCCAACTTTTATGATGAAACGTACGACTATGGTGGCTACACCACAGTGTATGAGGACAGAGGTCGTCGTCCGATGGGAGGCTTCCCCTCTCGGGATCATGGTGGATTTGAGCGTAGACCATACGATCGTGGTGGGCGTGGGGGTCACCACATGCAACACAGTAGGAGAGACTATGACGACATGAGCCCTCGCAGAGGCCCCCCTCCTCACAGAGGTGGAGGCAGAGGTGGCAGTCGTCCCCCACGGAACATGCCAATGGGACCACCCCATCATCGCAGAGGagacgaCCAGTATTACAGCTCCCATCGCAGTCACTCGGATGACAGACAAGGGGACAGGAGAGGTAGACCCCGGGATCGTTATGGAGGCAGCATGAATGATGGATATGaCAACTCCTCATGGGACAGCTATCAGTCTGGTGGAAGGGGCAGCTATGGTGATATGGGTGCACCGGTGGTCACCACACAAGTGACAATTCCCAAagatTTGGCAGGGTCAATCATTGGAAAAGGAGGCCAGAGGATTAAGCAGATCCGGCATGAATCTGGAGCATCGATTAAAATTGATGAACCGCTTCAAGGTTCAGAAGATCGCATTATCACCATAACAGGAACCCAGGATCAGATTCAGAATGCACAGTACCTGTTACAGAACAGTGCTCTCCATTTGCTGGGACACCACCATGAGTAACCTGTTCTGTCTCCACCTCTCTCAGGACCTCCAGCCCACTGCAGTACTACTCCAGCTCCTCCTTTCCAGCAGCGCTGCCTGACTCCTAGCACAAAATGCGTCTGTGAAATGTTTCTCCCTCATGTCATATCCTATGGAAGCTTAGATTTTGTGTGAAGACCTCTTGTTGAGTTCTTTCAGGCCAGAGGAAGGGATATATTTGGTTTGTCCTCCAAATGTCTGATCTTTAAGCATATAATCTAAATGCttggtattttttaaaataattgatttgTTACCACATGTTTTTCAGTGCATTACAGAAACGCATTGTAGGGTTTTGCTTTTTGctggatgtttgttttgcagGTCCTGTGTTCTTTTGACAATTTGAAGTCCTGTATTCTGAACAGCtgtgagcgttttttttttttttgcttttccttAACCAACCACCTTGAATCAGTCCAGAATGTACACAGAAATCTtggatttttttaatgagtattttttccttttttttttttttttttttatttaaacatgcttttttctCTTTGAAGACAAATATATTGGggttgtaagaaaaaaaaatatatgtaaatatcaAGTGATTTATATGGGATACAATTACTATGTTCCCATACCTGTCCTGTAAGTGTCTTGGTCTCTCCTCTGCCGTAGAGTTTCAGGAATCAGTGCAGCTGTAAACCTGGAGAAAAGATCTTGTTGatggttgtgtgtttttttttttttttttttttttgtttcctctcTGTCACTGGGTTTATAAAGCCCAGTGTTTATTGGGTTTGCTCTACCTCTGAAAGTTTTGTAGGTCTGCCACTATAACGAGGCCCACAGTCGTCTTTTTTCcagcatgttttaaaagaaacagGATATGGCATTGTGCTTTAGATTGTTGATAAAGAGCAGTAATTTTGGGGTttccttcctctttttcttgttttattttttcatatttttattttatttttttactcaaattgtCTTTGAATTTTCTCTCCCAGATACATTTGTAGAGTTTTGTCATttgtcaaaaataataaaatgccagtttttatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77441 lncRNA upstream 105868 39109244 ~ 39153476 (+) False agtpbp1
TU77434 lncRNA upstream 161921 39095337 ~ 39097423 (+) True G57427
TU77395 lncRNA upstream 935907 38323190 ~ 38323437 (+) True G57397
TU77332 lncRNA upstream 1009456 38249269 ~ 38249888 (+) True G57343
TU77323 lncRNA upstream 1024643 38233697 ~ 38234701 (+) True G57334
TU77476 lncRNA downstream 98023 39365656 ~ 39370585 (+) True frmd3
TU77495 lncRNA downstream 106367 39374000 ~ 39377061 (+) True G57473
TU77523 lncRNA downstream 229395 39497028 ~ 39497353 (+) True G57498
TU77532 lncRNA downstream 292795 39560428 ~ 39562898 (+) True G57505
TU77572 lncRNA downstream 459068 39726701 ~ 39730031 (+) True G57538
XM_022670624.1 mRNA upstream 105993 39109336 ~ 39153351 (+) True agtpbp1
XM_022670623.1 mRNA upstream 105993 39111679 ~ 39153351 (+) False agtpbp1
XM_022670625.1 mRNA upstream 105993 39118798 ~ 39153351 (+) False agtpbp1
XM_022670619.1 mRNA upstream 1053743 38174971 ~ 38205601 (+) True LOC111192680
XM_022670618.1 mRNA upstream 1122021 38097554 ~ 38137323 (+) True LOC103037590
XM_007237423.2 mRNA downstream 1589 39269222 ~ 39276715 (+) True c6h9orf64
XM_007237427.3 mRNA downstream 10794 39278427 ~ 39287807 (+) False gkap1
XM_022670627.1 mRNA downstream 10910 39278543 ~ 39287807 (+) True gkap1
XM_007237429.3 mRNA downstream 24438 39292071 ~ 39365820 (+) False frmd3
XM_007237428.3 mRNA downstream 24439 39292072 ~ 39365820 (+) False frmd3
TU76991 other upstream 2253546 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3296025 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 3834871 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4020244 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 4507781 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 777020 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 1332358 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 1407407 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 2107186 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 2170394 41438027 ~ 41438911 (+) True G58025

Expression Profile