RNA id: XM_022670627.1


Basic Information

Item Value
RNA id XM_022670627.1
length 2106
RNA type mRNA
GC content 0.46
exon number 12
gene id gkap1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39278427 ~ 39287807 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGCCCCCGGAAAGTTCAGCGGTTTGGTTGAGGGTTGTTTATGAATCgcgctgtgtgtgtatgagacagAAACACGGCGCGGTTCAGTTAGAAAGATGGAAGAATCTGGAGGAGTGCAGCAGCGGGGCAGAGGAGACACAgcgaacagcagcagcagcggagcTAACTAACAATACCACACAGTGAACACCATGACATCCACAATGATTTCAGTTCCCACCACAGCGTCACGCTTCGCCCTCCTGCAGGTGGACTCTGATTCAGGCTCGGAATCTGATGGAGGCAAGCCTAAAGGTGGTCGAGAACCTGGGAAGTCACGCTCAGGGAAACCTTCCAGTGGCAAACCTAACCCGAACactgagaagaagaaggagaagaagaagcgaAAGAAGGAGCAGCAGCAAAGTGAAACCAATGAGCTCAGGAGCCTTGCCTTCAAGAAGCTGCCCCAGAAGTCCTCTGCCCCGTCTCCTAATCTGACACTGCAGAGTTTAGCCAATGATTTGCTGCAGCCCCCAACCAAGGATCGCACCTCAGCCCCACAGGAGAACTGGCAGGAGTGGAAGCAGAGAGATGAACAgctGACCAGCGATTTGTACGAAGCAGACCTGGAAAAGGCCTTAATTCTGAGTAAGCTAGAATTTGAGCAGCAAAAAAAGGATACTCCAAGTGTGGAAACGCCATCACCAAAGTCCAAAGGAGgagggaagaaagagaaaaagaagaatcaGCAGGGGAAGGATAAGCGCATCACTGTGTCTCTAAAAGACTTTCAGCAAGAGGGAGGCATGGATCCGCTGAGTAAGAGGCCAGAGAGAGAGgagcagaagcctgtgaaccCAGCGGCCCGTGACGAGAGGTTCTTCAACCAGCTGGAGGACGATGTGAGCAAGATCGTCCAGAGAGACAAGCGCCGAGAGCGGTACAGCAGCAGCGCCGGGCACGAGGTCAACACATCCTCTGAACAAGAGCAGGATGTTCGAACAGAACAGTTAAAGTTTGAGTTGGAAAAGAAAGATAGGGAAATAGAAAAGCTGAAGAAGACAATTACACAATGGGAGgagCGATATAAAGAAGTGAAGGCGAGAAATTCTCAGTTACTTAAGATGCTTCAACAAGGAGAGATGAAAGACAAAGCAGAAATCCTGCAGCAAGTGGACGAGCTTCTGAATATTAAAGAGGAGCTGACATCACAGGTGACGTCACTGCATGCAGCATTAGAACAGGAGAGATCAAAGGTGAAGGGCTTACAGTCAGAACAACCAAAACATCAGACCAACCGGAAGGGAAAGAAGGGAACAGATGGAGATTCATGAAGACAGACCATGAAAGAAAGACAACAACAGCTTTAGCAGAGCTCCAACCTCTGGCTTTTTTGTCGTCTTCATCACTGACCCActcccacactacacacacacacacacttctcttaTACACTCTGAAACTCAGAAAAAGCTTTGTGTCAAACTCCTTCTGACTCTTCACGACAACAGTTGTCTCATAATGCCTGTGGGCAGAATTTGCCCTTGTgtgctgctgttttgtttttttctggaacTGGTGGTCCCAGCCTGCTTTCAGGTTAACCTGTAACAAATTTATTGATTTGCACATTCTGAGTTTTTAGCCTTTCTTTATCGGCccaacacctttttttttttatatactttgcTTTATTCATTAAAAGCAAAACAGCTGTAAGGTACATGCTACAAGTGCTACTCTACGTCTTCTCATTGATCATGAATGATGAATGTGGGGGAGTCAGACAGGATGAAATAATTTGAATGTGAGTTTGCCAAAAACACCATTATAGTTAATTCATGTTGTCCTGTGGGCAACGTACCTTAATTGGATTAAATCTTTTCATGTCATGGAAAAGAAAGTTCAAGACAACACATAATTCAGTGTCAATCAGAAAGCAGTATTTAGAGTCCTGTTGTTATTGTCTTTACTGGAATGTGCTGCCCCCTGCTGGTGACAAAGTGCCACTTTATCTCCACAACACAGCGACCCAAACCTTTGCTGTTCTGTACACTGAAAGCTAAAGGGGTGTATTATTGAGTTCTTTTTAATAAAGAGACTAATCTACTTTTTCAAAGCACA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 14568 39263171 ~ 39263975 (+) True G57457
TU77441 lncRNA upstream 125067 39109244 ~ 39153476 (+) False agtpbp1
TU77434 lncRNA upstream 181120 39095337 ~ 39097423 (+) True G57427
TU77395 lncRNA upstream 955106 38323190 ~ 38323437 (+) True G57397
TU77332 lncRNA upstream 1028655 38249269 ~ 38249888 (+) True G57343
TU77476 lncRNA downstream 77849 39365656 ~ 39370585 (+) True frmd3
TU77495 lncRNA downstream 86193 39374000 ~ 39377061 (+) True G57473
TU77523 lncRNA downstream 209221 39497028 ~ 39497353 (+) True G57498
TU77532 lncRNA downstream 272621 39560428 ~ 39562898 (+) True G57505
TU77572 lncRNA downstream 438894 39726701 ~ 39730031 (+) True G57538
XM_007237423.2 mRNA upstream 1828 39269222 ~ 39276715 (+) True c6h9orf64
XM_007237424.2 mRNA upstream 10910 39257525 ~ 39267633 (+) True hnrnpk
XM_022670626.1 mRNA upstream 10910 39259344 ~ 39267633 (+) False hnrnpk
XM_022670623.1 mRNA upstream 125192 39111679 ~ 39153351 (+) False agtpbp1
XM_007237429.3 mRNA downstream 4264 39292071 ~ 39365820 (+) False frmd3
XM_007237428.3 mRNA downstream 4265 39292072 ~ 39365820 (+) False frmd3
XM_022670628.1 mRNA downstream 16857 39304664 ~ 39365820 (+) False frmd3
XM_022670629.1 mRNA downstream 118858 39406665 ~ 39487936 (+) True LOC103031561
XM_007238046.3 mRNA downstream 236808 39524615 ~ 39528505 (+) True LOC103032512
TU76991 other upstream 2272745 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3315224 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 3854070 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4039443 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 4526980 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 756846 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 1312184 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 1387233 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 2087012 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 2150220 41438027 ~ 41438911 (+) True G58025

Expression Profile