RNA id: XM_007238037.2


Basic Information

Item Value
RNA id XM_007238037.2
length 3452
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC103029767
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39541728 ~ 39560277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACTGCAGCGTCATGCGACAGTCTGCTGCTCCGCgggttcatttatttatttatttgtgtacttCTCTGTTCATATGCTTAAGTACATCTTTCGCAACATAATCCGACTGATTGAATAAAGCTTCTGATGGAGAAGGAGGGAAAGAACCCTCCATCTCTTCAGCGCCGGTCCGTCTGCACGAAGCCCCGCAGCATCTCCGCCCCCTCCGGTCCACAGGTCCCACCCAGAGACCGAAGCCCAAACTCCGCCGTGTTCAGCTGGGATGATGGAGAGCAGCCCGGGCCTGGAGGACGAGCAGCCGCTAACCCTGAGCTGAACATTCTGTgctgaggggtgtgtgtgttgctgttggAGGCGGACAGTGGACGGCTCTTTGcccatgtctctccctgctAACAGAAGGGACAGGCCCTCTGCTGCTCCACGCAGacGGTCTGCTGGGACAGCCAGTGCTCGTAGTTCCCGCGGAGACTcctccatcagcagcagctaCTCAACATCCTGCTGCAAGAGCTCAGAAAGTAACACTATACCCCGCTCACACCCTGCTACACCTCgACGGCAGGCGAAGTATGCAGCCTGCAGTGAAAATCACGGCATCCGTCCTCCAGCCCCCGAGCAGTACCTCACCCCGCTACAGCAGAAGGAAGTGTGTATCCGTCACCTTCGCGCCCGGCTGAAAGAGAATGTGGAGAGGCTGCACGACAGGGATTCTGAGATAGGGGAGCTGCGAACGCAGCTCACACGGATGCAGGAGGACTGGATTGAAGAAGAGTGCCATCGAATCGAGGCCCAGCTGGCCCTCAAAGAGGCTAGGAAGGAAATACGGCAGCTCCAGCATGCTGTGGAAACAGTCCGTACAAACCTGGGCCTCCCAACCCCTGATCCGCAGGACACCAAATCAGAGGGGCTTGGCGTTGGCAGGTCGGAGGGGCTGGGGATTGGCAGGTTAGGGTCCCGCTACGGAGCCTCAAGGTCCTGCGGGTGCTCTCCGGCCCACACCATCAGCCGAAGCGCCACCTTCACCAGGCTTAGCAGTGAGACCTCACCTGGCACTGACAGGAATGGAAATGTCCTCTCAGAGCGCCACATTCCGGCCAACCGCGGAGCGGCTACTTTGCCCAGAGGTGACGGACGCACTCATCTCCTTCTGGAGGCAGCTCTACTGTCTGAGCAGGTCCCTCCCTCTCCACTTTGCTCGACCTTGTCACGCTCCTCCACCTATGAAAAGCTGTGTAGTGGTGAGGCGGTCTTACCGATGAGTCGTGCCTGCCATGCGGTCAACAACAACTgcagctgcacagtgcacaccTACCTCCCACACCATCACCTCTTCTTGCACCTCCCACAGGATGATGCTCCAcctcctccgcctcctcctccactCGCACCAACAGCACCCTCTAGTACATCTGAAGCAAGCGACAGGCCAGGGTTCAGATCACAGGCCTGTAGCCCCACCATCACATGGATCTCTGAAGAAGGAGGTGGGGAAGAGCTAAGCGTAATCACCTCCGCAACTTGCGCGCCAGACATCACTCTTGCCGAGCCGCAGACTTTCTCACTGTCTTCCACAGCTATTTCCCCTGCCCAGCTGTCGTACATTACAGAGCCTTTGCCCCCTGAAAACCTTGTTGATTTAACATCATCAGCTACATCTACACCTACAGTGCTGACTATGCCTCAGACTCAGCAACCTTGTCCTAGGGCATCTCCTCCACCTCTAGAGCATCATCCAAAGGAAGTAAAGGTTGTAGAGGTCAGCAAGGAGGATGGGGTGGGCAATGCTAGTACagaggatgaggaagaagacGAGCAAGAACAAGTTCCTCAAAGGAGCCACTGGAGCCGCTACTTCTTGATCGATCTGCTAGCGGTAGCTGTGCCAGTAGTCCCGACAGTGGCATGGCTGTGTCGTGGAGCACAGCGTGAGGGAATGCCCATGTACCACATGGGCTCCCTTCTACGGGGCTGCTGTGCTGTGGCGCTTCATTCCCTAAGGAGGGTCAGCAGCACTCGTCGTCAAGGCCCAACTGGAACAGGAGGAGCAACAACAATCTAAATACCTGCCCTACAGACTTTACCGTAGTGTCCTAGTTTTGTCAGCAATGCTCCATATAACTTGGTTCAAACGtccattaattaatcaaatcataTGCTAAAAAGCTGTGGCACAAAAAACCTGGGGCGCATACTCAACAGTGTAACACCATTGACGTAGACTTTTGCTTATTTCCAGGCCCTTACTCATTTCCACCAAttgtctctctgtttccctTTTTCCTCTCCATGATTCTACTCctatcaacatttttttggcttCCATCTTTTGAGCCCTTGAGTGGAAAATACACTTTCAAAAACAGTAGATCTTGAACACTGAGATAAAACAGCATCTGTTCTTTGATCCTTAGATAATAGAGCACGGCTCCCCTGGAGTCGAATGTGTTGTGGATGACTTGATGTATCTGaggcttttttgtttttcattctgCATTACATCTAGGTATTGCTCATTCATAATATGTATCAGAAATGTGGAATCCAATACcagctttttttaatacaagAAGATAAGAGAGAAATGGGACTGCATAAGCAAGTGCTTGCTTTATTTGCCTTTGGCTGAAGGAATGTCTTGAGGTTTCCAAGAATGTAGTACTGTTTGTTTAAGAATCCCAAATGGTATTCATCTGGCTTTAGATCGGTATGGATTTTACACACTTGTATAATATGATGCAAACTCAGGCTGAAATGTAGATATAGAAAGCACACAGGATTCCAAGACATACCAATGGCAAAAGGCCTGCTAGCTTTAACTTTCAGTTTAAATATAGACTACTATATTGTccggtaaatatatattttccactGTACATCTGAACCTCAATGTTCTGTTGGACATACAGATTAACAGTAGATATGGATGTAGTGCATTTAATCTTAAGCTTTAACAAATGTAGtgattttccattttaaacctTTAAGATTTGTTTATCCCTCAGTTCAGCACTATGGTTCACTTTAAGCAAGGAGCATTATATGAAATTCAGGGTTGCGTTGCTTGCGTTCAGATTAGCTCAGTGTAATGCTTCTCAATTTATGCATTTTGATCAATCATAGGTTGTCAAAGACAACGATGAAAGtcatgtttaagttcatttgaGATTGCATACATTAACTCCAGCAATGGATTTAAATCAGGGATGTCAAAAACCAACCCAAGAACTCTGCATAGGTTGGTTGGAGCTTCTGGTAGATTAGAGAGGGGGTAATGAACTGTTCATTTTGATGgatgaaaacaagaaaaaaactctGTTCTCAGAGCACTGGTTATACTTGTGTTAGAAATGTAGCCAGGAGTGACAAACAATTTAAATGGTTTTTGAAACAGGCATACATTTCTCTGTAAATAACtgtagttaaaaaataaaatgtttatttaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77523 lncRNA upstream 44375 39497028 ~ 39497353 (+) True G57498
TU77495 lncRNA upstream 164667 39374000 ~ 39377061 (+) True G57473
TU77476 lncRNA upstream 171143 39365656 ~ 39370585 (+) True frmd3
TU77473 lncRNA upstream 277753 39263171 ~ 39263975 (+) True G57457
TU77441 lncRNA upstream 388252 39109244 ~ 39153476 (+) False agtpbp1
TU77532 lncRNA downstream 151 39560428 ~ 39562898 (+) True G57505
TU77572 lncRNA downstream 166424 39726701 ~ 39730031 (+) True G57538
TU77576 lncRNA downstream 177283 39737560 ~ 39749700 (+) True G57542
TU77690 lncRNA downstream 245001 39805278 ~ 39810668 (+) True G57636
TU77693 lncRNA downstream 251958 39812235 ~ 39812766 (+) True G57638
XM_022670630.1 mRNA upstream 1186 39529615 ~ 39540542 (+) True LOC103030832
XM_022670631.1 mRNA upstream 1186 39529616 ~ 39540542 (+) False LOC103030832
XM_007238046.3 mRNA upstream 13223 39524615 ~ 39528505 (+) True LOC103032512
XM_022670629.1 mRNA upstream 53792 39406665 ~ 39487936 (+) True LOC103031561
XM_007237429.3 mRNA upstream 175908 39292071 ~ 39365820 (+) False frmd3
XM_022670640.1 mRNA downstream 262566 39822843 ~ 39829393 (+) True pqbp1
XM_022670647.1 mRNA downstream 283034 39843311 ~ 39961259 (+) True LOC103038904
XM_022670648.1 mRNA downstream 283902 39844179 ~ 39955823 (+) False LOC103038904
XM_022670649.1 mRNA downstream 283902 39844179 ~ 39955755 (+) False LOC103038904
XM_022670643.1 mRNA downstream 283904 39844181 ~ 39961259 (+) False LOC103038904
TU76991 other upstream 2535930 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3578409 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 4117255 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4302628 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 4790165 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 484376 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 1039714 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 1114763 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 1814542 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 1877750 41438027 ~ 41438911 (+) True G58025

Expression Profile