RNA id: XM_007238046.3


Basic Information

Item Value
RNA id XM_007238046.3
length 2045
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC103032512
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39524615 ~ 39528505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAATAAAGTCTATCTACAAAGTTGTTGCTCAGTCAGGGAACTGAAGCACAAAAAGATCATGCTAAAGCCCAGCCGCGTAAACCGCGGGCTCTATCAACATCAATGACTGTAAACGCGACTTTGCAGCGCGTGCGGGATGAACTGTCCTCCTTTCCCTCGCGCGCGTTACAGCACGCGCCTCTGTTCAGGGGGAACTACACGCTCGCGCTGCTGGTGAACGCGACGGGCGCGGGGCCGCAGCAGGACCTGGATGTGAACACGGACCTGTACTCGCGGGTGGCGGTGACCGTGCTGTACGCGCTGCTCTTCGCGCTCGGGCTGTTCGGGAACTCCACGGCGCTCTTCATCTTCTTCCGACGGAGAGCAGTGCGCCATCTGCAGGGCGCTGTGCACTACCACCTCGCGAGCCTCGCCGTGTCCGACCTGCTGGTGCTCGCGCTCTGCATGCCGGTGGAGCTCTACAACTTCATCTGGATCCACCACCCATGGGCGTTCGGCCAGGCCGCCTGCAGGAGCTTCTACCTGCTGCGGGACGGCTGCGCGTACGCCAGCTCGCTGAGCGTGACCAGTCTGAGCGTGGAGCGCTACGTGGCGCTGTGCCACCCGCTAAGAGCCAAGAGCGTGCTGTCGCGCGGCCGCACGCGCCGGGTCATCCTCGCGCTGTGGGCGGCGTCGCTACTGCTGGCCTCGCCGATGCTCTTCACCATGGGGGAAAGGCACGTGGGGGAGGAGCGCATCTGCACCACCATCGTGTCCTCGAGCACCGCCAAACTCGTCCTGCAGGTGAATGCTCTACTCTCATTTGCTGTGCCAATGCTGGTCATCTCCACAATGAATGGACTAATTGGACGACAACTCCAGCAAATACCCAATGAGACCTTGCTCCCTACCTACAGCTACCAAACAACAAGTTGTATCAAAATTGAGAGCGGTCGCATGCGCTCACTTCGCCATGGAGTTAAAGTCCTACGTGTGTTGGTTATTGCCTTTGTGGTGTGCTGGCTGCCATACCATGCACGTCGCCTAATGTTCTGTTATGTCACAGAATGGACGAGTGCGCTGTATGATTTTTACCACTACTTCTACATGGTGACCAACGTGCTTTTCTACATGAGCTCAGCCATCAACCCCATCCTTTATAACCTAGTCTCGTCCAGTTACCGCCAGATTTTCTTCTCCACCATTGGCTACTTCTGCTGGAGTTCAAGAAAGCTGAAGGTGAAAGGAAATAACAGGAGCCTGCAGTTTCCTCATCAGGCTCTAACAACTTTGGCCACACCCTGCAACAGCCAGCACACAATCAGCTCAACGGATGTGATGGAGACTATTAACTGATATGAATTATATGAATTTCATATCATTTGGAGCCATTGTGTGAGAATTTATTTGTACTTTAGCTAAAATAGCTCACAAGAATGACTGTAGGTTAactgtatttaacattttatggcATCAGTATTTATAAgactttactttaaataaactacattttacAAGTCTTACTTATCAGAACCTATAGTTTCTTAAATAAGCACAGAAAGCATTCCTATACTTTGTGTGCAGGTGTTATCTACAGTATTTCCTTTTTGTGTTAGTATACATATTTGAAACATGctgtttttgtattaaataGTCTTTCAgctttcattgtttttctgaAGAACAAACATGACTGTATTGCAGTTGTTGATGTACGCATACTCTTGTCCTAAATGAGGCAATTTAACACGCCTCGAGTCTTCACTGGTTCCTAGTAAAAGTGTGCGTTAGACATAAAACTAGCCTACAGAACCAAAAATAGTCCAGCTCCCCTACCAGAATCTGTACCTAGAGCCCTTACCTGCTTCAATTTGAACCTTGAACTCTTAGGATGCACAGAAGACAAACACCCAGATTATTTTGGGTCCTGGAACCAGGGTGCTGAAAGGAGTGTCCAAATCACTTGCTATCTTCAAAAGTCAGCTTGATCGGCACTAAaatgtgctatataaataaagatgacttgacttgattttaCGTTTAGCCAAATAAAgtctctttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77523 lncRNA upstream 27262 39497028 ~ 39497353 (+) True G57498
TU77495 lncRNA upstream 147554 39374000 ~ 39377061 (+) True G57473
TU77476 lncRNA upstream 154030 39365656 ~ 39370585 (+) True frmd3
TU77473 lncRNA upstream 260640 39263171 ~ 39263975 (+) True G57457
TU77441 lncRNA upstream 371139 39109244 ~ 39153476 (+) False agtpbp1
TU77532 lncRNA downstream 31923 39560428 ~ 39562898 (+) True G57505
TU77572 lncRNA downstream 198196 39726701 ~ 39730031 (+) True G57538
TU77576 lncRNA downstream 209055 39737560 ~ 39749700 (+) True G57542
TU77690 lncRNA downstream 276773 39805278 ~ 39810668 (+) True G57636
TU77693 lncRNA downstream 283730 39812235 ~ 39812766 (+) True G57638
XM_022670629.1 mRNA upstream 36679 39406665 ~ 39487936 (+) True LOC103031561
XM_007237429.3 mRNA upstream 158795 39292071 ~ 39365820 (+) False frmd3
XM_007237428.3 mRNA upstream 158795 39292072 ~ 39365820 (+) False frmd3
XM_022670628.1 mRNA upstream 158795 39304664 ~ 39365820 (+) False frmd3
XM_007237427.3 mRNA upstream 236808 39278427 ~ 39287807 (+) False gkap1
XM_022670630.1 mRNA downstream 1110 39529615 ~ 39540542 (+) True LOC103030832
XM_022670631.1 mRNA downstream 1111 39529616 ~ 39540542 (+) False LOC103030832
XM_007238037.2 mRNA downstream 13223 39541728 ~ 39560277 (+) False LOC103029767
XM_007238036.2 mRNA downstream 13224 39541729 ~ 39560277 (+) True LOC103029767
XM_022670640.1 mRNA downstream 294338 39822843 ~ 39829393 (+) True pqbp1
TU76991 other upstream 2518817 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3561296 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 4100142 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4285515 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 4773052 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 516148 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 1071486 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 1146535 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 1846314 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 1909522 41438027 ~ 41438911 (+) True G58025

Expression Profile