RNA id: XM_022670758.1


Basic Information

Item Value
RNA id XM_022670758.1
length 2105
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC103044102
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46057474 ~ 46070282 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAACAAAAGCAGCGTGCCCCCCGTTTCAGCGCGTCGCATCTACGTTAGAAATAGGAATTCGTTTTCAGGAGATCTGTGGGGAAATCGCCTTTTTCTTCAGAAAACCTGGATTTAATGATAAAATGTGAACATTTAACTGCTTTCTTTTTATGAGGAGAGCTCAGATCCGGCAGTTTACCGCTTTATACACCCCGTGTATCCGTCCGCTCTCTGCGCTCTgcgtgagtgtgagtgtgtgtagtgtgtgcgtgtgggcGTTCGGCGGCGGGCGGATGAAGATCAGCGGATGTTTGGGTTGTTAAGCACCGAGGTCAGCTCTCTGGAAGCAGACAGACACTTAAAGTGCAGAGTGAGCAGTTAGTCTGAGGCATGTTGCAAAAactggatgatgagcagctgatctgtggtgggtgttGGGaggagctgacttcagaaacttcacagtctggccggacaggagacgcgagagcctgagggtggAAAATCCATCGGTATCAGATTTGAAGAAACTAATCTGGAACTAAGCCTAAGCTCCAGACTTTGCTTTACTCAAGAACACACAGAAGGCCTGTAAAAGATGGAaggaaaaaacaatgaaaaatgttGAAATCCCCACAGAAACCACGCCAAGATTTGTGATTAAACTGACATCAGCAGTAATGGTGGTTCGAGGCTTATGGGTCTGTAAGGTCCGTGTGGGAAAACGCATAGGACATTCTGGGCTGGTCCCTGTCCTGTGCCTGTTGGTCTTCACCTGTCTTCTAGCGGTCTTCTTTATTGACTACATTGACTCTTGGGTCACCTCTCTTGGAATGAGTAGAATAGGAAGTGCACATGGCGGGGTTCTTCCTCAGAGCATGCCTCCAACCCGACCCGAGGAGTACCTCCTCATGCCAAGCCCTCTTGTCTGCCAACGTGCCAAACCATACCTTATCACCTTGGTGACCTCAGCCCCTGCCAACCAGAAGGCCCGCCAGGCTATTCGTGACACCTGGGGTGGGGAGGTGCAGGTCCGAGGCCACCGGGTTATGACCCTGTTCATGGTGGGTCAGTCATCAGACCCTGGCCTTGCCAAACAACTGGTGGAGGAGGCGCGAGAGAAGGGGGACTTGGTGCAGGGTCGCTTCCTGGACtcttacaccaacctgactctGAAGACACTGTCCATGTTGGCTTGGGCGCAACGTTTTTGCCCCCAGGCTCGCTTCCTTGCTAAAGTGGATGATGATGTGATGTTCAACCCCAGTGCATTGTTGCACTATCTCGCCATCAGTTGGGAGGGATCACAGAATGAACTGGAAGACCTTTACCTTGGCCGCGTTCACATGAGAGTAGCCCCGAACCGCAATCCGGCCAGCAAGCACTTCCTGCCTGAAGCTGTTTACAGAAACACAGTCTTCCCTGATTACTGCAGTGGAACTGCCTACGTTCTTTCTAGGCCCGCCGTGCTAAAACTATCACTTGCAGCTGCTGCTGTGCGTTTACCCAAACCCCTTCCTCCTGAGGACATCTTTGTGGGTTTGTGTGCCCATGCAGCAGGTATCGCACCCACCCATTCACCGTTCTTCTCTGGAGGACCACCTGTACCATATGGGCGCTGCTGCTACCAGGCCATGGTGTCTGTTCACCACACTAAGCCAGAAGAAATGCTCCACTACTGGGCAGATGTACATTCCACAGTTCCGTGCTCCTGGTTGGGAGTTCGAACCTCGTTTGGCATTTGCAGGTTAAGAGCATTTCTGGGAGCCTTGCTTGAGGCTTGAGTACACCTGGTGAGTCAACAGGAGAACTTGTGTAAGGTTGCACAAATGCAAATGCGAACAATCACTGTGAGCTGTTATTATGtggctttattttaaaatgtgccaGTCAAATTCAAAGTACTTCAATGTAAATGACATGATCAGgaccttgaaaaaaaaatcacaatcgCATATTGTTCTGTCTGTTATAAATATATGCTTAATCCTATTTGAGCCTTACTTTTGTTGGGAAAAGCCGCACTACCCCTTACAGCGCCGTTTCCAGTGCGTTCCCCCTGAATTCTTTTAAATAGTTGAGATGAGTAGAGAAGTCAAGAAGAGTCAGGATACCAAAGTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79703 lncRNA upstream 11212 46045144 ~ 46046262 (+) True G59127
TU79671 lncRNA upstream 23244 46023108 ~ 46034230 (+) True G59101
TU79672 lncRNA upstream 23244 46023108 ~ 46034230 (+) False G59101
TU79663 lncRNA upstream 149377 45907602 ~ 45908097 (+) True G59094
TU79662 lncRNA upstream 151156 45906111 ~ 45906318 (+) True G59093
TU79711 lncRNA downstream 3223 46073505 ~ 46103556 (+) True G59135
TU79709 lncRNA downstream 20094 46090376 ~ 46136855 (+) True G59133
TU79707 lncRNA downstream 22286 46092568 ~ 46093819 (+) True G59131
TU79714 lncRNA downstream 23817 46094099 ~ 46094982 (+) True G59136
TU79724 lncRNA downstream 36685 46106967 ~ 46108427 (+) True G59140
XM_022670756.1 mRNA upstream 43806 45993058 ~ 46013668 (+) True rbsn
XM_022670755.1 mRNA upstream 114016 45940868 ~ 45943458 (+) False trh
XM_007241177.3 mRNA upstream 114016 45940869 ~ 45943458 (+) True trh
XM_007238280.3 mRNA upstream 443901 45607741 ~ 45613573 (+) True rho
XM_022670751.1 mRNA upstream 450952 45548142 ~ 45606522 (+) True ift122
XM_022670771.1 mRNA downstream 52579 46122861 ~ 46186900 (+) False LOC111192690
XM_022670772.1 mRNA downstream 52842 46123124 ~ 46186894 (+) True LOC111192690
XM_022670965.1 mRNA downstream 335472 46405754 ~ 46423234 (+) True LOC111192738
XM_022670967.1 mRNA downstream 626197 46696479 ~ 46697515 (+) True LOC111192740
XM_007237033.2 mRNA downstream 757686 46827968 ~ 46851232 (+) True mmp23b
TU79487 other upstream 267320 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 1190636 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 1456514 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 1456514 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 1473556 44579126 ~ 44583918 (+) False LOC103028384
TU79888 other downstream 782082 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 2799885 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 2927878 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 3353234 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 4569212 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile