RNA id: XM_022670533.1


Basic Information

Item Value
RNA id XM_022670533.1
length 8821
RNA type mRNA
GC content 0.48
exon number 56
gene id LOC103037259
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35039169 ~ 35083292 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATTTCTCTGGCTGGTGCTGAACCGGATCCGCGCTGTTGCAGCTGCAGCTGTTCTCCCGCGACACGCCCTCCGTTTCTGCACATCACGCGCATCAGAAAGCGCACGCCTCCCGCTCCCTCTCCCCGCGCGCGGGGTGCAGTGCGTGTTTTGTTCCTTAGGACTTGCCGTATTGCGGCTCTCGCCCACGGATCTGTGTTTATTGCGGTGAACCTCAACTTTCCCCGCATCCATGAGGGGCGCGAGCATGTCCGCGCGGGGAAGCGGAACGCGGGGCTTCTATTTCAACACGGTGCTGTCGCTCGCGCGCTCACTGGCCGCGCACAGACCCGCGCCCGCGGAGAAGGTACAGAAGCTGCTGTGTATGTGCCCGCTGGACACCCGGGGTGTGTTTTCTTTGGATATCAGACGCAGGGACGCTGTCATTGCTCTGGCTGTGTTTCTGGTGGAATCAGATTTACAGCACAAAGATATGGTGGTGGGTTACTTGCTGAGTCTGCTGAAGGGGCTTCCCAGGGTGCAGTGGGTGGAGGAGGCAACTGGGAGAAAGAGCAAAGAGAGTCTTCCGATGGCGGAGATCTTCAGCTTCTGCTTGGTCACGCTGCTGTTTGATGTGGCACTGAGAGACCCGGAGTCGTGCACTCAGATTGTGGAGGCTGTAATGGAATTGATGCAGTCTCTGTTAGAGATCTTTCAGGCTCCAGAAAACCATGATAAAGTTTACCTGTGTAAATATTTGGTGCCGTGTCTCCTGGGCGTGACGCGGGCATTCGGACGCTATGGCAACATGAACGAACCGTTACTGTCCCAACTCTTCCCTCGTGTGTCATGCCAACCTGCGCCGCGTGTTGCCGTGGAAACGGAGGGCATCCGCAGGCGCTCCTTTAATGACTTTCGCTCCATCCTGCCGAGCTCTCTGCTCACAGTGTGCCAAGGAGACACACTCAGACGCAAGGCTGGCACTGCCAGTGCTGAAACACAGGGGAGCCCAGAGAGAGGTGGGCCGTCACCCTGCTCTCCCACTGCTCCCGGCCCTCAGTACTTTGAAGGTTCATATCTTCCAGACGGAAGTGCAGTGGACCCTGATTATTACTTCACCACCGTCAGCTCCagcttctctgtctctcctctctttacTGTAGCCAGCGGACAGGAGATGAACATGCCTCTGGAACTGCTCAGACAGCTCCTGCACATGGTGAAAATCTTTGTGTCTGATTCATTTCTAAAGACCCTGGATGGAACTATAGGGGAAGTAACTGAGACAAACCCAGGCGCTGATCTCTTCTACAAATCATTCAGTGACCCTCTGTACGTCAGCATGTTTAAGATGCTCAGAGATACACTCTATTACATGAAAGATTTGCAGTCAGGCTTTGTGAAGGAGGTTCACGACTTTGTGTTGGAGCAGttcagcagcagccaatcagagctgcAGAGGGTGCTTCATGAAGCAGAGAGGTTGCCAGGGCAACCTAGTCCCTTAAAGCTGCGTTGCCACGCCAATGCCGCCTGCGTGGATCTCATGGTGTGGGCCGTCAAAGATGAGCAAGgaGCTGAGAATCTCTGCACTAAGCTGTCTGAGAAACTTCAGTCTAAAACCTCCAGTAAAGTCATCATAGCTCACATGCCTCTCCTCATCTGCTGCCTCCAGGGTCTGGGTCGGCTTTGTGAACGTTTTCCGGTGATCGCTCACTCTGCCACCATGTCTCTGAAAGACTTTCTGGTGGTGCCGTCCCCAGTTTTGATCAAACTCTACAAATACCACAGTCAGTCCAGCTCAGGTGGAGGAGAGATCAAGATCAGCGTGACCAATGAGCATTCCCAGTCCACCTTCAACATCCTGTCTAACAGGAAGGACCAGCCTTCTATGTATGAACAACTGAGGGACATCTCCATCGACAACATCTGCAGATGTCTGAAGGCGGGGCTTAGCATGGATCCTGTTATAGTAGAAGCATTTCTAGCCAGTCTTTCAAATCGGCTGTACATCTCTCAGGAAAATGACAAGGAAGCCCACCTGATTCCAGACCACACTATCCGAGCTCTGGGCCACATCGCCGTGGCGATGAGAGACAGTCCGAAGGTGATGGAGCCGATCCTCCAGATCCTGCAGCAGAAGTTCTGTCAGCCTCCGTCTCAGCTGGATGTGCTGATTATAGATCAGCTGGGCTGCATGGTCATCACTGGCAACcAATATATTTATCAGGAGGTGTGGAACCTGTTCCAGCAGATCAGTGTTAAAGCCAGTAACCTGGTGTACTCTGCTACCAAAGACTACAGAGACCATggatacagGCACTGCTCTTTAGCAGTGATCAATGCTTTAGCGAATATCGCCGCTAATCTGCAGGGAGAGCCGCTGGAAGACGAGCTGCTGATTAATTTACTGGAGCTGTTTGTTCAGCTGGGACTGGAGGGGAAGAGGGCGAGCGAGCGGGCGAGCGATAAAGGACCCGCCCTGAAGgcctCCAGCAGTGCAGGGAATCTTGGTGTTCTAATTCCAGTGATTGCAGTGttgacCCGGCGGTTGCCCCCCATTAAAGAGGCTAAGCCCCGCCTTCAGAAGCTGTTCAGGGATTTTTGGCTTTACTCGGTGGTCATGGGCTTCGCTGTAGAAGGTTCCGGACTGTGGCCTGAGGAGTGGTATGAGGGGGTTTGTGAAATCGCTACGAAGTCGCCGCTGCTCACGTTCCCCAGCGGAGAGCCGCTACGCTCCGAGCTTCAGTACAACTCCGCCCTGAAGAACGACACTGTTACTCAGGCGGAGCTGAACGATCTGCGCAGCACCATAATTAATCTGTTGGATCCGGCGCCGGAAGCTGCGGCTCTCATTAACAAACTGGACTTCGCCATGTGCACCTACCTGCTGTCCGTCTACAGACTGGAGTACATGAGGATGCTGCATTCGAACGATGCGGACAGGTTCCAGGTGATGTTCAGATATTTTGAGGACAAGGCCATACAGAAGGACAAGTCAGGGATGATGCAGTGTGTGATCTGTGTTGGCGACAAAGTGTTTGAGGTGTTTCTCCAGATGATGGCAGAAAAGCCAAAAACTAAAGAGCATGAGGAGGAGCTGGAACGCCACGCACAGTTCTTACTGGTCAACTTTAACCACACCCACAAGAGAATTCGACGAGTGGCTGACAAGTATCTTTCAGGATTGGCTGAAACgtttcCTCACCTGCTGTGGAGCGGACGAGTTCTGAAGACTATGTTGGACATTTTGCAGacactgtctctgtctctgagtGCGGATATTCACAAGGACCAGCCTTATTATGACATTCCTGATACTCCTCACAGAATTACAGTACCGGACACACATGAAGCTCGAGAgAGTATAGTAAAGGACTTTGCTGCACGCTGTGGTGAAATTTTGAAAGAAGCGATGAAGTGGGCGTCGTCTGTTACCAAATCTCACCTACAGgaGTACCTAAATAAGCATCAGAACTGGGTTTCTGGTCTTTCTCAGCACACTGGTTTGGCGATGGCCACTGAGAGCATCCTTAACTTTGCCGGCTACAATCGGCAGAGCATGACTCTCGGGATTGCTGAGGTTATTGGCCAGATAAAGGCCACCCAGCTGACTGATCGACCCACCTGTGTGAAGAAGGATTACTCCAATTTCATGTCCTCTCTGAACCTGAGGAACCGCTACACCGGGGAGgtggcgGGGATGGTTCAGTTTGctgcagctacacacagtgAGTCTGATCTGAGTCGGCTGATGGTCGGTCAGATGAGTGAAGCTTTAGAAGCGAAGGATTCGGATTCGTTCAcacagagcatgtttaaaatgacGGCTCTGCTCATCAGTGTTAAAGATTACGACCCGCAGCTGCTGCACCACCTCTGCTGGTCTCCTCTGAAGATGTTCACTGAGCACGGCATGGAGACGGCTATTGCATGCTGGGAATGGTTCCTTGCTGCCTGTAATGGAGTGGAAGTCCCGtttaTGCGTGAGATGGCGGGGGCGTGGCACATGACGGTTGAGCTGAAGATGGGCCTGTTTTCAGAGACTGAGTTGGAGGCGGATCCTTTAGCAGCATCAGAGGAGAGTCAGCCATTGCCCCGCCCCCCTGACGTTACTCCACACGCCCTCTGGATCGAGTTTCTGGTGCAGAGGTTCGAGATCGCTAAATACTGCAGCGCAGATCAGGTGGAGATTTTTACCGGCCTCCTCCAGAGGGCGCTATCGCTCAGTGTGGGCGGAGCCAAGAGCTGCCTGAACCGTCATGTGTCCGCTATCGGACCTCGTTTCAGGCTCCTGACTTTAGGCCTGACCCTCCTGCACGCCGACGTCGTCACCAACGCCACCATCCGCAACGTCCTGAGAGAGAAGATCTACTCTACAGCCTTCGATTACTTTAGTGTTGCTCCGAGGTTCCCCACTCAGACTGAGAAGCGTCTGCGGGAGGACATTAGCGTCATCATTAAATTCTACGCCTGTCTGCTGTCTGATAAGAAATATctcacagccaatcagctcgtcCCCCCAGATCCTCAGGACGTGTCGGTGAACAGTCTGTCAGTGATGGCGGTGGCAGATTCCCGGAGCAGTCTGGACGCTGCCGTGGGCTCCAGACAGCCGGCCATGCAGGGCTGGATCAACACCTACCCCCTGTCCAGCGGCATGTCCACCCTGTCCAAGAAATCAGGTCTGTCAAAGAAAAGCAACAGAGGCTCTCAGCTACACAAATATTACATGAAGCGCAGAACACTGTTACTGGCCTTACTGGCGAGTGAGGTGGAGCGTCTGACGACGTGGTATAACCCGCTGGGAACTCAGGAGCTGCAGATATCGTCTGAACAGTCGGTGGAGACCAGCATCGTCAACTGGAGATCAAAATACATCAGTCTGACGGAAAAGCAGTGGAAGGACAACGTGAACCTGGCCTGGAGCATCTCGCCCTACCTCGCCCTCCAGCTGCCCGGCAGGTTTAAGAACTCTGAGGCTATCGTGTCGGAGGTCACGCGTCTGGTGCGCATGGACCCCGGAGCGGTCAGTGACGTTCCAGAAGCTGTAAAGTTTCTGGTCACGTGGCACACTATTGATGCCGACTCTCCGGAGCTGAGCCACATCCTGTGCTGGGCTCCAGCAGATCCTCCCACAGGCCTGTCCTACTTCTCCAGCATgtaccccccccaccccctcacCGCTCAGTACGCCGTGCGCGTCCTGCGCTCCTTTCCTCCGGATGCCATTCTGTTTTACATCCCGCAAATTGTTCAGGCCCTCCGCTATGacaagATGGGGTACGTGCGGGAGTACATTCTCTGGGCGGCACAGAAATCTCAGCTTCTGGCTCATCAGTTTATCTGGAATATGAAGACCAATATCTACACAGACGAAGAGGGACATCAGAAAGATcCTGATATcggggagctgctggagcagctggtggaggagatcacgGGTTCCTGTTCTGGTCCTGCTAAAGATTTTTACCAGCGCGAGTTTGATTTCTTCAACAAGATCACCAACGTCTCTGCTATTATCAAACCAATTCCTAAAGGTGATGAGAGGAAGAGGGCGTGTCTCAGAGCTCTGTCTGAAATCAAAGTTCAACCAGGATGCTACTTACCGAGTAATCCAGAGGCCATAGTGATAGACATTGACTACAAGTCTGGAACCCCAATGCAGAGtgCTGCTAAAGCTCCATATCTGGCCAAGTTTAAGGTGAAGCGCTGTGGAGTCAGTGAGCTGGAGAAAGAAGGTCTGCTGTGCAGATCAGACTCGCTGGAGGAAGGCCGCAGTGAGGAAGAGGCTCAGAGGATTTGCTGGCAGGCGGCCATCTTTAAAGTAGGAGACGACTGTCGTCAGGACATGTTGGCCTTGCAGATAATCGGTCTGTTTAAAAACATCTTTCAGCTGGTGGGATTGGATTTATTCGTCTTTCCGTACAGAGTTGTTGCTAcagcaccaggaTGCGGGGTGATCGAGTGTATTCCTGACTGTAAGTCGAGGGATCAGCTGGGCCGTCAGACAGACTTCGGCATGTATGATTATTTCAGGAATCAGTACGGAGACGAGTCCACGCTGGCCTTCCAGAAGGCACGGTACAACTTTATCCGAAGTATGGCAGCATACAGCCTCCTGCTTTTCCTGCTCCAGATTAAAGACCGACACAATGGAAACATCATGCTGGACAGTCAGGGGCACATCATTCACATCGACTTTGGCTTCATGTTTGAGAGTTCTCCTGGAGGAAACCTGGGCTGGGAGCCGGACATTAAGCTGACTGATGAGATGGTGATGATCATGGGAGGAAAGATGGAAGCCACACCCTTCAAATGGTTTATGGAGATGTGTGTGCGGGGCTACCTGGCCGTCAGGCCGTATATGGATGCTGTGGTCTCCTTGGTGACGCTCATGTTAGACACCGGTCTTCCGTGTTTCCGTGGTCAAACCATCaaactgctgaaGCAGCGATTTAACCCCAGCATGAGTGAGAAGGAAGCAGCGGCCTTCATGATTAAAGTCATCCAGAACTGCTTTCTCAGCAGCAGgagTAAAACCTATGATATGATCCAGTATTACCAGAACCAAATCCCGTACTGAGCTGACAGCCGACAGTACAGTTACAGCTGGACCCTTACTAAAATCTCATGTATGTTTTATGGAAGAACTGttacatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcacatagAGTGTTAATGCACAGTGTTaaataggggtgggacaaaatatcaaaatcaatATATTCTATTGTTTTGTTTGCGATACATTATTCATCAaatatgggttttttttatttattgaaacagGCGCTCTAAACCCCCTAAGCCCCGCCCTCAATTAGAGGagttactaaagttactgcttcattccacatggtggcgctataatctaATGAATAGGGTTAACAAAACCTTCAGTGAAGAATATCGGTTGCTAAATTGTGTAAAACTGAaccaataaatctataattcctggtatttgattatttaggagtattttattctcttcagaAACACAGACGATGTGAAAGATCATAGAATTGTGTTGTGATTTATCGACTATCACAGAATCAAAGTATCGTGATCTTATCGTTATTGTGGGCAGTGTATCGTGATATTgtatcgtgagatgccctgtgatccCACCCCTAGTTTTAACATGTTTGCCTCCCTTGTTGTGGAATTTTGATTGCCTGTTTGTTCAGTACTCTCTGCACTTTATACGCCTGTAATGCACTTGCaagtttttaatcttttattgaGTTCTTCAAATGAATATCCATATATGAACCATTTCTCCCTTTcagatattcttttttttttttcattttgacaactttttacataaaaaaaataaaatgtgcctCATGTAGACTTATATTTTTAGACTTTAATCATAAaagcatataaaataaatgatttctctcaaaagagagaaatggttaaaatggtTATTGGTTGAAACCGCGCTGCCCTGCTGATGTACTGTTAACTGCATGGCTTCAGTGTGTGAGAAAAACAGCGCAGTAAAGGGCAGCACTTTATTCTACAGTATGGTAAGTGACTagtatgtaatatgtaaataaGTTAAAGGTAACAATACTAGTGATTTTACGGTACTTTAGTAAGGCAGTGGTAACTACTAGTAAAACTACCAGCTGCCAGGTTTTAGGACACATGCTTCATACACGTTAAATATTCAAATTCActagtatatactgtatctacatTCTGAATAAGACCATAAGAGAACAGTTACTACTtaatctgttatcaaaccccaaaaccagcacagctccatttatctgttatcaaacatgagccattaattcagctcggaaaAGTTAGCATTGCCCGTTAGCTAATGGGCTAATCGGTCATTTTTTGACTTAAAAAACGCCAGtgcagaaaatatataagaagaGATTTGTgctaaaatataatatgtaaaatataaaatataataataataaaagtgatgaaaatgattaagaaatattaattaatcacagagcaTCAGTTGCCAGTACTAGTAGTTACCATTGCGTTGCTTCTTACTATTTACCTATTAAATAGTAATTACTCACATACTGTGAAATAAAGTGCTACCCACTGAAGTTTATTATGCCTCAACATTACAGACTTATCAAGAGTTTGTAGCTTTCATCTCTTTAAAGTCTCAAAACATACGATTGATCActgaatgctgttttctgtgcaCTTGCTATGACGACACCTGGCATTTGAGTCTTGCTGTAAGAAATCCCAGTTTCTTGCTTCTCTTTCGAGATTGAAATTGCTTTTTCTAAAATACGAGcactaaatataattaataagagatttacattaatttaaatataaaaatatgtacattGATATGTCTATAAAATACTGTGCATCATATCTGACTGATGGCTTTGTAActtgctaactgcactaagttTGTGTTCAGTTGTGAACCATTGTTCACCAAGACTGAAGGTCTTTAAATCAGTgattaataaaatcatataaatttttttaaggttttagaaaTACTCCATCCTGCCCTGCTGGGTGAGAATTACAGACTATTTCAGCCTGTGAAAATTTGTTAGATACACACCAATCAGAACCAGATCAGCCCGAGGTCCTATTTAACCAATCACAGCTTGTTTACAGTATGTGCCTCAGTGTTGAACAGATTGTGAagtgattttaatatttgtacACTCGTTTACATGTTTGTCATTTTTCTGAATCTTTTCTATCCTGCACTGTTTTTGGATGGATACAGCCTGagatgtttaaataaattattatatggaAA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76077 lncRNA upstream 49884 34986081 ~ 34989285 (+) False LOC103047498
TU76063 lncRNA upstream 162524 34874561 ~ 34876645 (+) True G56419
TU76051 lncRNA upstream 327694 34707496 ~ 34711475 (+) True G56411
TU75995 lncRNA upstream 422056 34608634 ~ 34617113 (+) True G56370
TU75993 lncRNA upstream 435191 34601453 ~ 34603978 (+) True G56368
TU76089 lncRNA downstream 7444 35090736 ~ 35093338 (+) True G56437
TU76100 lncRNA downstream 27749 35111041 ~ 35168021 (+) True G56444
TU76101 lncRNA downstream 31693 35114985 ~ 35115756 (+) True G56445
TU76105 lncRNA downstream 50291 35133583 ~ 35136048 (+) True G56448
TU76122 lncRNA downstream 88606 35171898 ~ 35176979 (+) True G56459
XM_007231478.3 mRNA upstream 20444 35015117 ~ 35018725 (+) True LOC103047196
XM_007231477.3 mRNA upstream 33449 34990826 ~ 35005720 (+) True gins4
XM_015600795.2 mRNA upstream 52352 34961800 ~ 34986817 (+) True LOC103047498
XM_007231479.2 mRNA upstream 52352 34961800 ~ 34986817 (+) False LOC103047498
XM_007231482.3 mRNA upstream 116151 34879822 ~ 34923018 (+) False dbnl
XM_007241248.3 mRNA downstream 427 35083719 ~ 35089185 (+) True snap29
XM_007229137.3 mRNA downstream 108512 35191804 ~ 35195665 (+) True LOC103034472
XM_022670542.1 mRNA downstream 143193 35226485 ~ 35247343 (+) True ikbkb
XM_007229136.3 mRNA downstream 176628 35259920 ~ 35265350 (+) True enkd1
XM_022670547.1 mRNA downstream 182676 35265968 ~ 35274621 (+) True polb
TU76054 other upstream 287606 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 527527 34505455 ~ 34511642 (+) False fgf17
TU75802 other upstream 1457801 33564828 ~ 33581368 (+) False izumo1
TU76153 other downstream 143204 35226496 ~ 35239100 (+) False ikbkb
TU76213 other downstream 337495 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 872812 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1921981 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4961361 40044653 ~ 40046467 (+) True G57664

Expression Profile