RNA id: XM_007241279.3


Basic Information

Item Value
RNA id XM_007241279.3
length 1412
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC103023575
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40579898 ~ 40584423 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACTAACATGaagactgcgcatgcgctgagcTGAGACACCGAAAATGGCGGCGCTCCGGATGGCTGTGTGCTGCTCCGCTGGAAGAGCTTTTCTCACGTCGAAAAGCGCAGTTCATGTTTCTAAAGTGAATATGTCCTTCACCAGCCTGTCCAAAGGGGGAAAGGTGGCGATTTCCACTTTGGGTGTGTTGACAGCAGGAGGAGCTGGTCTAGCACTGATACTTCATCAGTCTGTGAAAGCCTCAGACCTGGAGCTGCACCCACCATCTTATCCCTGGAGCCACAATGGCATGCTGTCTTCTCTGGATCATGCCAGTATCCGCCGTGGCTACCAGGTGTACAAGCAGGTGTGCTCAGCCTGCCATAGTATGGAATACTTGGCTTTCCGTAACCTGGTTGGAGTGTCGCACACAGAGGACGAGGTCAAGGCTCTTGCTGAGGAGATTGAGGTAGTAGATGGCCCAGATGAGTCGGGAGAGATGTTCACTCGTCCAGGGAAGCTGTCTGATTATTTCCCAAAGCCGTATTCCAATCCAGAAGCTGCACGGGCTGCTAATAATGGCGCTCTTCCTCCTGACCTCAGCTACATTGTTAATGCCAGGCATGGTGGGGAGGACTACGTGTTCTCATTGCTGACAGGCTATTGTGAACCCCCTGCTGGCATTTCTGTGAGAGAGGGTCTCTACTACAACCCCTACTTCCCTGGCCAGGCTATTGGCATGGCACCACCCATCTACAATGAGATCCTAGAGTATGAAGATGGCACTCCAGCAACCATGAGCCAGGTGGCTAAAGATGTGTGTACTTTCTTGCGCTGGGCGGCCGAGCCAGAACACGACCAGAGGAAACGCATGGGCCTTAAGCTGCTTATGGGCTCAGCAATCCTGATTCCGCTAGTGTACTACCTGAAGAGGCACAGGTGGTCTGTTCTGAAGAGCAGGAAGATTGCTTACAGGCCACCCAAATAAACCACTCTTTGCCTAGCCTGGATCAGCTCAACTCTGCGTCAACTCTGAGTGTCTGCGTCCAGTCCCtcaacattcattcatttatttgccGCAGTGGACATTCTGCCTTTCTTGCAAGGGAATTACTTTGGTGACATAAtattatgtataataaatacactgaGGGAATATCCTGTTAATGGCTGCATTTAGCTAGCTGATGAGCTGATGGACATTGGAGGGCCATGATCATACTTTAACATCACACATCACAGTGTCAAGGAGAGGAGTGTTATTATGTAATGTACACATTTATGTCAATATGTGCTGCattgaatatattaaataatttttgaaAACTTTATGATGTGTATGCATTTTGTGTGTTGAGGGGGTAAGGGGGTTTAGGTTTGACCTGTCTTGTGTTCTTCTGGGTCAATAAACTTCTCCAGGTGTTCTCACAGa

Function

GO:

id name namespace
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00413 CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77910 lncRNA downstream 288712 40290977 ~ 40291186 (-) True G57788
TU77900 lncRNA downstream 324082 40255567 ~ 40255816 (-) True G57782
TU77865 lncRNA downstream 415618 40162984 ~ 40164280 (-) True G57754
TU77866 lncRNA downstream 415618 40163016 ~ 40164280 (-) False G57754
TU77855 lncRNA downstream 417794 40161527 ~ 40162104 (-) True G57748
TU78104 lncRNA upstream 80097 40664520 ~ 40664764 (-) True G57916
TU78114 lncRNA upstream 157091 40741514 ~ 40748539 (-) True G57925
TU78113 lncRNA upstream 164318 40748741 ~ 40755872 (-) False tprg1l
TU78108 lncRNA upstream 177072 40761495 ~ 40762172 (-) True G57920
TU78249 lncRNA upstream 864790 41449213 ~ 41452982 (-) True G58031
XM_007241278.2 mRNA downstream 314 40574858 ~ 40579584 (-) True LOC103023259
XM_015603697.2 mRNA downstream 16587 40553636 ~ 40563311 (-) False LOC103022532
XM_022670673.1 mRNA downstream 16587 40553636 ~ 40563311 (-) True LOC103022532
XM_022670674.1 mRNA downstream 16599 40553636 ~ 40563299 (-) False LOC103022532
XM_022670675.1 mRNA downstream 18418 40553636 ~ 40561480 (-) False LOC103022532
XM_007247899.3 mRNA upstream 25187 40609610 ~ 40615645 (-) True LOC103026522
XM_007247900.3 mRNA upstream 35227 40619650 ~ 40627651 (-) True LOC103026801
XM_022670676.1 mRNA upstream 47645 40632068 ~ 40638773 (-) True LOC103024844
XM_022670682.1 mRNA upstream 68151 40652574 ~ 40662571 (-) False rer1
XM_022670678.1 mRNA upstream 68151 40652574 ~ 40662567 (-) False rer1
TU77868 other downstream 400832 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 460803 40117789 ~ 40119095 (-) True G57727
TU77632 other downstream 1017007 39521544 ~ 39562891 (-) False LOC103030299
trnaw-cca_41 other upstream 21606 40606029 ~ 40606100 (-) True trnaw-cca_41
TU78238 other upstream 811663 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 2518447 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 3097901 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 3783477 44367900 ~ 44368368 (-) True G58649

Expression Profile