RNA id: XM_007243218.3


Basic Information

Item Value
RNA id XM_007243218.3
length 2042
RNA type mRNA
GC content 0.41
exon number 6
gene id timm17b
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39815860 ~ 39821454 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTGTCCATCAGGTGGCGCTGAAACCCCGGCGGGCGGCTGCGTCACGGCGCCGAGGTCAGCGGCTGATCATGGAGGAGTATGCCCGTGAACCCTGTCCTTGGAGAATAGTAGATGACTGCGGAGGTGCATTCACGATGGGGGCCATCGGTGGGGGGGTGTTTCAGTCCATCAAAGGCTTCAGGAATGCGCCTGTGggcgtACAACACCGGCTGAAAGGCAGTGCGAACGCTGTGAGAATTAGAGCACCGCAGATCGGTGgaAGTTTTGCTGTGTGGGGAGGCCTCTTCTCTACCATAGACTGTGGCCTGGTGCGGCTGAGGGGTAAAGAAGACCCCTGGAACTCCATCACCAGCGGAGCCATGACTGGAGCCATTCTGGCAGCACGCAGTGGGCCTTTGGCAATGGTCGGCTCTGCCATGATGGGGGGCATTCTACTGGCCCTGATTGAAGGATTTGGTATTTTACTCACCAGATACACAGCTCAGCAGTTCCAGAATCCGAGTCCATTTCTGGATGACCCCAGTCAGCTTCCTCCTAAGGACGGAAGCCATGGGCAGGACAACCGTGGCTATGGACAGTACCAGTAGAATTACTGTTTTCCTGCTGTGACTTTGACTCTGCGGATGGGGGAAAATAACAGTTGGAGGTTTTATTGTACACAACTTTTACGTGGTAAGGTGCCCTCTGGACAGGTAGTGGGGGTTCACCTTACCCTCCTTAAAGTCTGCATTTATAATAATTGCTCAGGGGCAGTAAGTcgtttattgtgttatttatgtATGAGCTGTAATTATACACTTCAGTATTTAATGAATTGAACAGGGAAGTTTTAGCACCAGAAATGCTAATGTGTGTAATGCGAGTATCAGTCGTGTTTTGataattatgtatttaaatggCATTGAGACGGCCACACGTAGAAAATGTATCCTTTTTAGAACAAAATTCAGTTCAGAAAATTAACTTTCAGTACATATACAGCAAACATATTTGTAGCAGTTTGACGGAAAAGGCTATGGCGGCCATTATTTACTCTTATTTACTGTACTTGTAATAACAAGAATTTGTTTTATTCCTCAAAACCTTATTATGATATTACACAAGACATAAGATCTTGAgaaaatgaaactattttatcAGGATACTGatagaatttatttaaaatggatCCTTTTTTATTGCTGTGATTATTGCTTAtagaaaatgaaacatttttacaatCTTAATAATAATCTCAGATGTTGAGATTATatgcgtgtgtatgtgagtgtgttggtgtgtgtacaCCACTTATTTCCAAGCTCTGTGTTGCAAGAGTGAGCCATCTATATTTTTCAGTTGTTTATTATGAAATCACACAGCCCCGCCACTGTGATACTATACAGCATGTGTAGTATACGCTCTTTTAAACTACATCCTGTTCCCATCATTTTGGTGGGCTGCACTCAACTGGAACTAATGCACCATTCAACACTCCATAGTTGCGCATTTTGTGTATCAGCAAATCTCaagtaacatattttaaattctttttgtATAAAACTTATTATTACTGAAAAACATCAAAAAGCCAAAATGCTACTTCAAAGCCAGATTGGACAGTCTTGAATTGTGAGCTTACTTCACACAGCTAATAGGTTTGTGGAATATGTTACTTTTGCCACATGTATCTGGGTattatatttgttgttttttcctgTCATGTTGGCCTcacagccacaaaaaaaaatagtttttcctGAAGTTTTTTAGTGTGGACAAACAACACATATTTCTAACAGCCAAAATATATCGGTCACCTTcacttaaaataacatttaaatgttgGTTATTTAAAGCTAGCTGATCCAGTGTTACAGTTTACACTTTACACAATGCACTCTTTCAAGCATCATGGATATGACTTAATTTCTAAATAAAGTAACAGGGACTGCCTGTGtctattttagtcatttctgttgttctgtccatgtattatttattgtgcactataagtaAGGAGAAAATGTTGATGTATGattaaagtattttgttgttAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17795 TIM17; mitochondrial import inner membrane translocase subunit TIM17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77676 lncRNA downstream 94248 39719431 ~ 39721612 (-) True G57623
TU77594 lncRNA downstream 448151 39363085 ~ 39367709 (-) True G57560
TU77463 lncRNA downstream 590268 39224941 ~ 39225592 (-) True G57447
TU77466 lncRNA downstream 662509 39151918 ~ 39153351 (-) True G57450
TU77468 lncRNA downstream 665039 39143116 ~ 39150821 (-) True G57452
TU77749 lncRNA upstream 1227 39822681 ~ 39829352 (-) True G57671
XR_002650085.1 lncRNA upstream 90666 39912120 ~ 39967320 (-) False LOC111192684
XR_002650084.1 lncRNA upstream 90931 39912385 ~ 39967320 (-) True LOC111192684
TU77784 lncRNA upstream 166030 39987484 ~ 40089127 (-) False G57704
TU77786 lncRNA upstream 264620 40086074 ~ 40090251 (-) True G57704
XM_022670638.1 mRNA downstream 839 39806607 ~ 39815021 (-) True praf2
XM_022670637.1 mRNA downstream 13208 39757462 ~ 39802652 (-) False LOC103034295
XM_022670636.1 mRNA downstream 13208 39757462 ~ 39802652 (-) True LOC103034295
XM_022670635.1 mRNA downstream 60257 39729088 ~ 39755603 (-) True LOC103028093
XM_022670641.1 mRNA upstream 9200 39830654 ~ 39841946 (-) True gpkow
XM_022670650.1 mRNA upstream 304760 40126214 ~ 40140995 (-) True renbp
XM_022670654.1 mRNA upstream 329193 40150647 ~ 40160654 (-) False LOC111192685
XM_022670652.1 mRNA upstream 329193 40150647 ~ 40160654 (-) False LOC111192685
XM_022670655.1 mRNA upstream 329193 40150647 ~ 40159237 (-) False LOC111192685
TU77630 other downstream 252969 39521544 ~ 39562891 (-) False LOC103030299
TU77816 other upstream 296335 40117789 ~ 40119095 (-) True G57727
TU77868 other upstream 357241 40178695 ~ 40179066 (-) False LOC103037008
trnaw-cca_41 other upstream 784575 40606029 ~ 40606100 (-) True trnaw-cca_41
TU78238 other upstream 1574632 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 3281416 43102870 ~ 43107623 (-) True G58435

Expression Profile