RNA id: XM_007247123.3


Basic Information

Item Value
RNA id XM_007247123.3
length 2573
RNA type mRNA
GC content 0.44
exon number 15
gene id msi1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28827738 ~ 28858160 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctcctctctctctccctctctctctctccccgtaacacacacacacactcagccatacacacacacactcccgcgTGGCTCGGTACGGGACGAATGGAGTCTGAGGGCAGCCAGAGCACCGTGTCCAGCGCGGATTCACCCCACGACCCCTGcaAAATGTTCATAGGAGGCCTGAGCTGGCAGACTACACaagAGGGTCTGAAAGACTACTTCTGTAAGTTCGGCGAGGTGAAGGAGAGCATGGTGATGCGGGATCCGGTTACGAAGCGCTCCAGgGGCTTCGGTTTTGTCACTTTCGCGGACCAGGCTGGAGTGGACAAAGTGCTGGCCCAAACCAGGCATGAGCTGGACTCCAAAACAATCGACCCGAAAGTGGCCTTCCCCCGCCGAGCCCAGCCAAAGCTGGTGACGAGGACTAAGAAGATCTTTGTTGGAGGTCTGTCAGTAAACACCACGATCGAAGATGTAAAGCAGTACTTTGACCAGTTCGGAAAGGTGGATGATGCCATGCTTATGTTTGATAAGACCACCAACAGGCACAGAGGGTTCGGCTTCGTGACATTCGAGAACGAGGATGTGGTGGAAAAAGTGTGTGAGATCCACTTCCATGAGATCAACAATAAGATGGTGGAGTGCAAGAAAGCCCAGCCCAAGGAAGTGATGTCACCGGCAGGATCATCGAGGGGACGTGCAAGAGTCATGCCGTACGGGATGGATGCATTCATGCTGGGGATAGGGATGCTGGGTTATCCTGGTTTCCAGGCAGCGACATACACTGGCCGTAGTTACACCAGTCTCACTCCCGGATACACATATCAGTTCCCAGAATTCCACTTAGAGAGGACCCCCCTCCTGACTTCACCCCACCCCCCTGAGCTCACAGcCATCCCCCTGACAGCATATAACCCaatggcagcagcagcagctgcagcagctgtGGTCAGAGGTTCTGCCCCCTCTCGTTCCGCTGGCTTCCTTAGCACCAGCAGCCCAGGACCAATGGCAGAACTTTATGGGACGGCCAGTCAGGAATCAACAGTCAGCAGCTACATTAGCGCCGCAAGCCCTGCCCCCAGCACTGGGTTTAGCCACAGTCTTGGAGGTCCTCTGATTGCTACAGCGTTTACTAACGGCTACCACTGAGACAATGACCAGTCTGATGGACGGCGTCACCTGCCCTGAGCCAGTCCCACACTTTTACAGCAAATCTACACTAGAGTTTCTGCGTTTCTCTCACACCACCAGTactaacactctctctctcacacactctctctatctgtctgtctctctctcttaaacggAAGGGCATGtaaatatttagattattttCTGGTTCGaacaaaaagcatttttaaaaaaaagacacgcTGTATGCTTTTCTCTCataaatattttcaattttcctgtttttcttaTTATCGCAatgctgttttcttttgttatgaaatttattaatgtgtttttcaagacaCTGTAGGTTTACATTTGTAGAgtgatttttttagattttaacagTTGTACATGagcaataatattattattaataataatatcaataataatgataataataataataacgtgtCCTTGTTACActtttggattaaaaaaaaaaaggatacagTGACTTTAAGATAATACGTTTTCTACGGAAAAGAAAATATTGGAAGGAATgttcaaaaatgtatattttggtAGTTTTGCAACTGGATTTATGATATTGATCATGATCATGTTATTAACCAAGGACATATTTTTCATTAGATTTGAGCTTGTTTTTCTTGTAAAGGATTTTAAACGCTGTTTTTGGATCTTGTTGAGGTCACTTGGAAAACGTTTCATTGTGGAAAACATCTGTGatgtgtgattttgtttgtgTAAATCTTAACACAAGTTTTTgtacacttaacacacacaagACGgtctttaacacacacacacaggacggtctttgtttctttaaatgtaatattttgacCTTTtggctttttctctttttttgaacttgaaatgtgtttgttttgtgtgttgttgAAGAAAGTGTATGTGTATGACAGGCTACTAATAATGCTGGAGGCTCTGTGAGAATGTGCGTgcgtttgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtttgcgtctgtgggtgtgtttgtgtgtgtgtgggcagttGGTGCTGTCATGGTCTAATGTATTCCCCTGTATGAGAGgatttaaaatgtgaatttaataccttTTTTTCTAACATCCACGTTATGTTTTAAGCATTGGTTGTTTACGTTGTCGACTAAATGCATCGCTCTGTTCTGAAATCTCTGTTGATTTGTTCTGTTGATCTGAAGGCCTGTCCCACAGATCTGGGTAAAGTTAATCGCTGCGAACAAAACTGATACTGGGAAAAACTGAGGGTTGAaggtgggggtggtggggggtgggtAATTATGACGAGGATGACCAATTTAGGTCCGGTAACTTTCAAATGTCTCAATAATGTTTTCAGTCACACTTCACTGTCTGTACAAAATGGACATTTCAAAATTCCtaataaattatttcaaataTTACAA

Function

GO:

id name namespace
GO:0007417 central nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74522 lncRNA downstream 34872 28792155 ~ 28792866 (-) True G55267
TU74503 lncRNA downstream 99754 28727612 ~ 28727984 (-) True G55253
TU74501 lncRNA downstream 111737 28715239 ~ 28716001 (-) True G55251
TU74496 lncRNA downstream 123511 28703622 ~ 28704227 (-) False G55249
TU74538 lncRNA upstream 14540 28872698 ~ 28872989 (-) True G55281
TU74559 lncRNA upstream 34117 28892275 ~ 28895538 (-) True G55299
TU74581 lncRNA upstream 128612 28986770 ~ 28987328 (-) True G55315
TU74583 lncRNA upstream 172929 29031087 ~ 29031325 (-) True G55317
TU74586 lncRNA upstream 309809 29167967 ~ 29168282 (-) True G55320
XM_007247125.3 mRNA downstream 13827 28806678 ~ 28813911 (-) True tmem233
XM_007247126.3 mRNA downstream 24037 28794816 ~ 28803701 (-) True LOC103026611
XM_007247129.3 mRNA downstream 57744 28767056 ~ 28769994 (-) True LOC103027379
XM_007247130.3 mRNA downstream 61267 28752231 ~ 28766471 (-) True hps4
XM_022670955.1 mRNA upstream 23721 28881879 ~ 28884887 (-) False LOC111192730
XM_022670954.1 mRNA upstream 23721 28881879 ~ 28884887 (-) True LOC111192730
XM_007247221.3 mRNA upstream 43390 28901548 ~ 28955223 (-) False lzts1
XM_015605308.2 mRNA upstream 43390 28901548 ~ 28920838 (-) True lzts1
XM_022670471.1 mRNA upstream 362397 29220555 ~ 29388554 (-) True LOC103024952
TU74381 other downstream 227228 28598278 ~ 28600510 (-) False LOC103031600
TU74384 other downstream 403783 28417733 ~ 28423955 (-) True LOC111192657
TU74195 other downstream 670289 28153421 ~ 28157449 (-) True G55023
TU74086 other downstream 1096659 27728711 ~ 27731079 (-) True G54947
TU73985 other downstream 1354391 27469218 ~ 27473347 (-) True G54873
TU75652 other upstream 3923118 32781276 ~ 32802153 (-) False LOC103021360
XR_002650076.1 other upstream 4290916 33149074 ~ 33177650 (-) False LOC103023237
trnaa-agc_13 other upstream 4502211 33360369 ~ 33360441 (-) True trnaa-agc_13
TU76301 other upstream 6235393 35093551 ~ 35108393 (-) True LOC103038119
XR_002650079.1 other upstream 6427264 35285422 ~ 35293421 (-) False acaa2

Expression Profile