RNA id: XM_007247132.2


Basic Information

Item Value
RNA id XM_007247132.2
length 3510
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC103028225
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28744353 ~ 28750831 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcagcactTTACGatattctagtttaaaaaaacattcaaaactaTCCTGAGatgttataatacagtaaaaaagggATCAAGTGAGTGTCAGGTGTAAATCACACTACACCATCATGAGTTAAGTACCAAAAAATGtcattatgattttatttagtcACAGAATATTATAGTGATTACTTCAATTGTTTGTTAAGGGATTGGCACCAATAATAGGAATCCaaatacagaatatttttagcattttttaaatgcacatttaaatacccattatcaAACACTTAGTCTTAAGAAAGAGTGCGATTATTCTGGCTAAAACAGagaattttactgtttttttaatcgattaacactaaaatagcaatgaaataaacacatttccCAAAATAAATTTCACACCGTTAGATTATTAAGTGCACGTTGCGCATTTGGCCACTAGATGTCGCTAAAAACGGTGTTTTAAAAGTCTTAAGCAGTTGATGAATCTCTTTTCTATTATAacgtttaaataatttaatttacttcagACAATGTGATTCCCTTGATGAATGACGTCAGGTCCTTTCTTCCACTTGTCCATCTGCTCCATTTTCTCAGAGCCATTGTGTTCTGGTGGCGAAAAAGAAAGTTTAACACTCTCTCAGCTGGTGGCGTTTCTTTTGCAAATGAGTGCATTCTTAGCGATGGTCCACAGGCACTGTAATTAGGGTCATTAGGGGGGGCACGTAGGAACAGGCCGCATTATGTGCCCGGGGGGTGTGAATGGCCCTGGGGGAGGAGAGCCATAAAGATCAGCTGAAAAATGTGCTGCATGACCAGAGAGGACTACTGTTAGAAGAAGCTCCAGCAGCCGGTCTGCACCCACAGCTCCTGGACTTTTTTTATGAGGAATTTATTAACCATGCTTCTTCCATACAGTCTTCTGCAGATCCTCGCCTGCCTAAGCATGCTGCCGGGGGCGCGAGGAGGCTCCCTGTTCGCTCGGACAGCCCAGAGCCCGTCCCAAGAGGAGGCCGAGAAGATGTGCACCACCCTAGCAATGCCCTGGACTGAAGCCAGGCTTCAGGGGGGTCACTGGGGTCACATCTACAGGCTGAAGGTGTTAAACATGGGCGAAGGTGGACCAAAGAGGGCCGTTTTCCCAGAGCAGTCTCTCTTCCGCTTCGTCCGGCGAGTTTACCACTGCTGTCAGATGGGCTTCCACTGCGGAGGAGTGAAGGGCTTACAGGGCAGAGAGGCTGGAGGTTCGAGCATCGAGTTCCGGCTCAGCGAGGATGTTCTGTCAGCCCCGGTGGTAAGAGCAGAGATTCATCTCCAAGTTTCAAACCCACAACATCTCAACATCCAGCCACTGCTGCCTTCACTGGAGAAACGTCAGCTACCTACACGATATGCTGCTTGGTCTAAAGACGGTGTTTCGGAGTTAAGGGTGGACCTGACTTTCCTCTTTCAGGCTCTTCAGCGGGCCCTTGGTAGTGGCCGAGGTGGCCCTAGCCTTCTAGACATTCGAAGAGTGGGTGGTTTAAGCAGGCCCTGGGCTTCGGACTCCAGAGATAAAGGCTTCCATGACCCAATCTTAGCTGTGCTAGGCGAAGGACATGGAGATGGATGGTTAGAGCGCTCGCTGCAGTCCGCTGCAGAGCTGGGTCTGGCTCTGCACTGCAGCACGACAGAGACGAACACACAGCCATGCCAAAACCACAGGGTCCGACTGCTACACACACCATTCATCACACTCTCGTACCGATAGCAGCACCCCCAACACCCAATGTGCTCTGGATTAGCCTCATTGGAGAGAGATGCAAATGCTAATGGCTCCTACTGTTGAATAACAATAGATGATCTGTTGTATATTGTTCACTAATGCTCTGAATGCTCTGAGCTTTACAATACTGTGCACTTCAGCAAGTgatttgaatttatttaatttatatgggtgttgttttgtggaaaaaaatgtaaatagtgTATGTAAAAGACATAGTTATATATAAACTTCACTTTTCCTTTTTCAAACTTCTGCTGTTTGATTTACTGCCTTTTATTGCATTTGTGGTACTTTAGCATTAAAAATCTATATGCAAAAAGTTTTACTTTGGTtgaattttaaacaaacaaagaaaattacaaattttgATGGTTTTGATTGTAATTGTTCGTTTTAATTCAGTTGATTTAATTTTCTTTGGCAATAATTACAGACTTATGTGCACTATAACACAATTAATTCAGGCGGTATGTAGTATATTCAGTGTCACATTTATGTTTGCAGTACAGAGAATACTCAAAATTTCCCCTGGAGTACAAAAGTATGCAAAATTtagcaatatataaaaatgcacaaaatccCTTTAAAATTGTTTGGAATACATAATGTGTGCAGGGAGGAAAAGACAAGTATGCTAAATTTAATCTTACCATGgaaaaagtataataaagttACACATATTGTACAAAGTATTCTAATGTTAACTGTACAGTAGAAAAAGTATGCTAAGGTTAGCCATACAGTAGGAGGAAGTATGCTAGCTACCAGAAAATAAAGTAATCAGTTCAGTTGAAGAACGCTAAAGTTAGCCTTGTAATATGAAAAGTATTCTAAAATTAGCCTTGTAGTACGAAGAATGCTACAGTTAGCTACATTTTGCCTTGCTCCATTTGAGCTCAGGTTTCAGAATTTCCTAGGGTTTCGACAAATATACTATATTGCCAAACGTATGCACTCACCCATCCAATCAGTGACCTCAGGTTTtaatcacttccatggccacaaGTGTTTAAAACCAAGCACTgaggcatgcagactgcttctacattagtgaaagaattgGTCGCTCTAAGGAACTTTAGCGTGGTACAGTAATAGGATGCTTCCTGTGTAACGAGTGTAGTCATGAAATCTCCTCACTAATAAAAagtccacagtcaactgtcagtgattttATAACAAAGTGGAAGTGACTTGGAAAGAAATAATCTCATTCTGTCACTGTAAAATTACAGAGTGGGGTCAGCTGAAGCACATAGTGTGCGTAGAGGTTACCAACTTTTTGCAGGGTCAaacactacagacctccaaacttagCTTAAAAACAGTATAgcgagcttcatggaatgggtttccatggctggACAGCTCCATGCAAGCCTCATATTACTAAATGCAATGCAGGTGAGTAGACACTTTTGGCAACATAGTGTAGGATTACCTACCCAGAAAGATTTTTCGGGCTGTTTAAATgcgcaaaatctgttcagaatgatgttattattccaacactaaagaagcaaagacctattatttaagaaaaatgttaattagGAACAAATCTACGAAAAATTTAAACAAGAATAATGCGGGAAATGatccacaggcctaaacatcGGTAAATTAGGCTACCAAAATGATGTctaaatgactttcctctaatctaatctaagttaacatggtttaagaatataaaatactttcttaaccaacaaacattttaatatttagcataTAACTAtgt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021532 neural tube patterning biological_process
GO:0007275 multicellular organism development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048856 anatomical structure development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74503 lncRNA downstream 16369 28727612 ~ 28727984 (-) True G55253
TU74501 lncRNA downstream 28352 28715239 ~ 28716001 (-) True G55251
TU74496 lncRNA downstream 40126 28703622 ~ 28704227 (-) False G55249
TU74497 lncRNA downstream 40126 28703622 ~ 28704227 (-) True G55249
TU74434 lncRNA downstream 75206 28668940 ~ 28669147 (-) True G55204
TU74520 lncRNA upstream 35067 28785898 ~ 28865551 (-) True G55265
TU74522 lncRNA upstream 41324 28792155 ~ 28792866 (-) True G55267
TU74538 lncRNA upstream 121867 28872698 ~ 28872989 (-) True G55281
TU74559 lncRNA upstream 141444 28892275 ~ 28895538 (-) True G55299
TU74581 lncRNA upstream 235939 28986770 ~ 28987328 (-) True G55315
XM_007247135.3 mRNA downstream 2530 28733294 ~ 28741823 (-) True hnf1a
XM_007247144.3 mRNA downstream 144526 28554727 ~ 28599827 (-) True LOC103031600
XM_007247147.3 mRNA downstream 197146 28538022 ~ 28547207 (-) False LOC103032242
XM_007247130.3 mRNA upstream 1400 28752231 ~ 28766471 (-) True hps4
XM_007247131.3 mRNA upstream 1400 28752231 ~ 28766469 (-) False hps4
XM_007247129.3 mRNA upstream 16225 28767056 ~ 28769994 (-) True LOC103027379
XM_007247126.3 mRNA upstream 43985 28794816 ~ 28803701 (-) True LOC103026611
XM_007247125.3 mRNA upstream 55847 28806678 ~ 28813911 (-) True tmem233
TU74381 other downstream 143843 28598278 ~ 28600510 (-) False LOC103031600
TU74384 other downstream 320398 28417733 ~ 28423955 (-) True LOC111192657
TU74195 other downstream 586904 28153421 ~ 28157449 (-) True G55023
TU74086 other downstream 1013274 27728711 ~ 27731079 (-) True G54947
TU73985 other downstream 1271006 27469218 ~ 27473347 (-) True G54873
TU75652 other upstream 4030445 32781276 ~ 32802153 (-) False LOC103021360
XR_002650076.1 other upstream 4398243 33149074 ~ 33177650 (-) False LOC103023237
trnaa-agc_13 other upstream 4609538 33360369 ~ 33360441 (-) True trnaa-agc_13
TU76301 other upstream 6342720 35093551 ~ 35108393 (-) True LOC103038119
XR_002650079.1 other upstream 6534591 35285422 ~ 35293421 (-) False acaa2

Expression Profile