RNA id: XM_007247166.3


Basic Information

Item Value
RNA id XM_007247166.3
length 1998
RNA type mRNA
GC content 0.47
exon number 7
gene id fbxo4
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28158310 ~ 28164602 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGTAAGTTGTGACAGTTCCGGGAGATGTGAGTGTAGCGGTGGGTTCAggcaggtgtgttcaggtgtgcgGAGCTGTGGTCGCTTCATTAATAAGACTATTGATCAGAATCTGATCTCTGTGATCATGCGGAGCGCTCTACTGCGCAGCCTCAGGAGCGTCCGCGAGACTCTGCTGCCGGACACCAGCGCGAGAAGCTCACACCTGCCCCAGCGgcgcgaggaggaggaggatgaggatgaagGCAGCAGGTCCTCTCTGGATCATCTGCCGGTGGATATGCAGTTTCTCATTATGACCTACCTCCCCCCTGAGGACCTGTGCAGGCTGGGAGGCTGCAGCAGATACTGGAGGTCGATGGTTCAGGAGCCTCTGCTGTGGAGGTACTTCTTCATGCGGGACATGGCCAGCTGGACCTCTGTGGACCATTTGTCCATGCCTCAGGAGGAGTTCCTGAAGACAGCAGCAGTGACGGAGGGATCAGAGCTGCAGAGACGGGACTACATGTCAGAGTATCTGCGCTGTTCCCCAGCATGCCGGCGTCAGTATGGGCAGCACCGGCCGGCTCTGGAGGCTGTGGCGCATTTCCTGCAAAACCTGGTAGCCGGAGCAGAGCCGCGGTTCGCCATGCTCGGACCCGGTCTGGAACAGCTGGACATTTCTCTGATGACTACCATGATGTACTCTCCACACATCCTGCCTATGGCAGGGATACCACAGCGACAGATCGAAGGGATTGGATCTGGAATTAGTTTTCTGTATAACAACCGGCATAAATTCAACATTATTACTTTATACTCAACTTACAGctcagagagggagagagctcGGTTGGAGCAGCAGAGTGTGCGCAGTAAGCTGTTTGTTCAGCAGGGGGAGGTAGAGGGTCTGCCGGTGTACAGTGTGACCCCGCAGGTACAGGAAGTGTGTCAGGCTGTGAACGGGTTCATCTTCGTCTCAAACGCTGAGACTGACCGGGgGCGTATGGAAGAATCCAGTCAGCTGCAGTCTGTCCTTCAGCCCGTTTGGGGTCCGGCGTCTCGCCCACTGCTCGTTCTGTCCTGCGTGTCCAGAGAGGGAGCACAGCGGACCCCCAGTGTTACTGTAGCACAACAATTACAGCTCCACCTACTGGCCAACCCCTGGATGgtCCAAGATGTAGTATCAGAGTCTTTAGCTGGACTGCTGGACGGTATTGGCTGGCTACTGAAGCATTCTGGGCTGAGGCTGTGACTCCAGTGGGCTGAAGTAAAATCAAATTTACACATATAAACTTAAGGAATATAGCATTCCTGTggtggtattattattattattattactgttgttaTAATTAGAATTATAACACTATTACAGTTCAGTTGCCTTACCTCAAGCAATGTTTTGTACTTATTGAATGAATATTGcactgtttttaattgttttatatagAACCATGGtactcaaaaacaaaaaacatttagatgCTTAAAGGATTCTTTGCCTGGTTGTGTCTGGCCCACactaagatttaaaaaatcttaaataatgaTGAAACCGTGAGAGACTCCATacataaagtttttaattttttacagactTTTCTGTCTTTAATCTTTGTTAGTTATCATCTCCCTCACACTACACAGTCTgccctaaaataaaatctgaataaaacagcactACCTTTAAGATTATACACTCCTTTCCAATGATTCTGATTCTCGAAACCTCGCTGGAGTTTCTTGTGAATGGGTGTAATCAATCAGTGGATACAGCAAAACCATTGCTACGCTAGTTGTGAGCGAATTTAACTCCAAAAAAAACGTAAGAAAAAAAAGGCCAATAGTTTAAACCATGTCTGAAAAGGAAAGAGTTGACATAGCTATTATGTACTGCAACGTGAGCTAGAGATGAGTATACACTTATTGTAAAGAACTTCTGTTTGTCTATTCATcaatacatctggcccgcaagtATGAAACATCTGGGctgtgaggttgtttaaactataatgaa

Function

GO: NA

KEGG:

id description
K10291 FBXO4; F-box protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74170 lncRNA upstream 30404 28126754 ~ 28127906 (+) True G55004
TU74156 lncRNA upstream 61017 28032891 ~ 28097293 (+) True G54991
TU74121 lncRNA upstream 197522 27960436 ~ 27960788 (+) True G54969
TU74080 lncRNA upstream 327544 27830107 ~ 27830766 (+) True G54941
TU74075 lncRNA upstream 362002 27788997 ~ 27796308 (+) True G54938
TU74177 lncRNA downstream 569 28165171 ~ 28167512 (+) False G55011
TU74178 lncRNA downstream 569 28165171 ~ 28166767 (+) True G55011
TU74221 lncRNA downstream 45694 28210296 ~ 28210513 (+) True G55047
TU74229 lncRNA downstream 93763 28258365 ~ 28262006 (+) False G55053
TU74230 lncRNA downstream 93763 28258365 ~ 28262006 (+) True G55053
XM_007247167.2 mRNA upstream 751 28153462 ~ 28157559 (+) True c6h5orf51
XM_007247172.3 mRNA upstream 134707 28015206 ~ 28023603 (+) True rgs7bp
XM_022670441.1 mRNA upstream 144545 27999394 ~ 28013765 (+) True LOC111192652
XM_022670443.1 mRNA upstream 144545 27999627 ~ 28013765 (+) False LOC111192652
XM_022670442.1 mRNA upstream 146277 27999387 ~ 28012033 (+) False LOC111192652
XM_022670445.1 mRNA downstream 48095 28212697 ~ 28247485 (+) True ghr
XM_022670446.1 mRNA downstream 51289 28215891 ~ 28247485 (+) False ghr
XM_022670448.1 mRNA downstream 107897 28272499 ~ 28283827 (+) True znf131
XM_007247162.2 mRNA downstream 120767 28285369 ~ 28299831 (+) True nim1k
XM_022670449.1 mRNA downstream 139726 28304328 ~ 28313589 (+) True LOC103037168
TU74065 other upstream 298361 27837306 ~ 27859949 (+) False ipo11
TU73937 other upstream 445732 27703772 ~ 27712578 (+) True G54841
TU73818 other upstream 940307 27211302 ~ 27218003 (+) False LOC103030972
TU73727 other upstream 1123372 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 1135419 27020244 ~ 27022891 (+) True G54682
TU74355 other downstream 481462 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 481462 28646064 ~ 28649113 (+) False asphd2
TU74460 other downstream 589428 28754030 ~ 28754817 (+) True G55218
TU74882 other downstream 2364260 30528862 ~ 30550061 (+) True G55532
TU74844 other downstream 2457324 30621926 ~ 30625046 (+) True G55502

Expression Profile