RNA id: XM_007247172.3


Basic Information

Item Value
RNA id XM_007247172.3
length 1965
RNA type mRNA
GC content 0.51
exon number 6
gene id rgs7bp
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28015206 ~ 28023603 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCTAGCACGGAGGCGCGGGACACTGATCAGCCAACTATCCAATCCTAGTACAAATGGGCGTGGTTTGTCTGAAAACGGGTGCGCATAGCGAGGTCAGAACAgcagcatctttctctctctctcactctaccgctctctctctctcgtgcgcGCGCTCCTTAGCCGTTAGCGCTCGAGACTCGGTTTATCCGCAGAAGCGATGAAAGCACCGCGGCGGTGAGGAGGGCGCGCGCGGGGGGTTCACGATCGATCGCTATCGATTGGTATCGATTGACATCGGCCGCTGTCGGTATCGAGCATGCACGCTCTCTGATCTCGCCCTCGAGACGAAGGTGACTCGCGTGCAGTCGGTGGCAATGCAGAGAGGAGGAAGAGCTCATGCGCGAGACGAGGAGCCGCGGTGCGCGTGACACATAGATCGACTGATTGGAAAGCGAGCAAAAAGCAAAATTTACTGAGAGTGAAAGAGCGCGCGTGcgtgtgttaaagtgtgtgtgtgtgagagagagacggagattGAGCGCGCGTGTATGTGTGCAgagggtggaggtggtggtggtctCCTCGCTGGATGAGTCTGTATGAGTTCTGCTCCGGCAGGGCGCAAAACCCGCCCCGTCCTCCAGCTGGCCAAACCCGGCGAGCACGAGCGCGCGGAGGGAGCGGACTGCAGGATGGTTGTTCAGGAGTTCAACACTCTGGTGGCGCTGTATCGGGAGCTGGTGATCTCGGTGGGGGAGATTTCGGTGGACTGCCCCTCTCTACGGGCAGAGATGCAGAAAACCCGCACTAAAGGCTGCGAGATGGCTAGAACAGCTCATCAGAAACTGTCTGCAATATCAGGGCCAGAGGATGGGGAGATCCACCCGGAGATCTGCCGGCTGTTTATCCAGCTGCAGTGCTGTCTGGAAATGTACCTGACAGAGATGCTGAAGTCAGTGTGTCTGCTCGAATCTCTGCAGCTCCACCGGAGAGggaAAGATTCTGCACTGAAGTTGGAGAGTCGGAAAGAGGAGAGTTCAGATGTTCCCATCCTGGAGGAAACGTCTTCATCTCCGGTAGAGCAGCAGACCCACTGCCTCGTCACCACCGATATCGAGAACATCGAGAGGGATATGACAGAGATGAAGAATCTTCTCAGTAAACTCAGGGAGACGATGCCTTTACCGCTGAAGAATCAAGACGATAGCAGCCTGCTAAACCTGACACCCTACCCTCTGGTCCGGCAGAGAAAGAGGCGTTTCTTTGGTCTCTGCTGTCTGGTGTCCAGCTGAGGCCACAAAGACTACATTTCCCATGATCCCTTACCATGTGTGACATTCACAAGTCAACTGTGTTACTGCCATGTCCCAAACCAGTGCTTTATGTTGGTTGTGAGGGCTGTCTGATTTCTTACTCCTACAGAACGGCTGCGTCTCTGCACCATCGCTGATCAGTAATCAGTATATAAACACGTACACAATATCAATATACCAGTATATGATCAATACAGAGCGTTTCCTTTTGTAGAAGAAGTGAATGTAGTTCATGTCCATCACCATAATGCTGAAGATATGTTGTAGATTAACACTGCAGGCTGTGTTCATGCCTCTCCACAGCGCCCCCTGCTGGTGCAAAACGAGGCCAGTGTTATAAGCTCCACTCTGCAGTTCATTTTGCATGCTTACAGGGCGGTTAGTTTAATACATACACACGTTTACACGTCTAAACGTTTACACGTTTACAGCTCTGTCATTTAGAGAGATATCAGTCTCAGCACAACATAAGCGAATGTTGGATGTGTCTGGTCTTGTCTTGGCTCTGAACCTTTTCTTTCCTGCTCCTCCTCTACTTTAATTACACTATTATTTAGTCTTCCATAAACCGAAAACCTGTAACCTTTTTCTGTTTGTGTCCATCTTTAGGGATAAACAATACCTGAAAAGGCCTttgtacataataaataaagctaTATATACGGAAA

Function

GO:

id name namespace
GO:0009968 negative regulation of signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74121 lncRNA upstream 54418 27960436 ~ 27960788 (+) True G54969
TU74080 lncRNA upstream 184440 27830107 ~ 27830766 (+) True G54941
TU74058 lncRNA upstream 212515 27771524 ~ 27802691 (+) True G54929
TU74075 lncRNA upstream 218898 27788997 ~ 27796308 (+) True G54938
XR_002650062.1 lncRNA upstream 295370 27717975 ~ 27719836 (+) True LOC111192651
TU74156 lncRNA downstream 9288 28032891 ~ 28097293 (+) True G54991
TU74170 lncRNA downstream 103151 28126754 ~ 28127906 (+) True G55004
TU74177 lncRNA downstream 141568 28165171 ~ 28167512 (+) False G55011
TU74178 lncRNA downstream 141568 28165171 ~ 28166767 (+) True G55011
TU74221 lncRNA downstream 186693 28210296 ~ 28210513 (+) True G55047
XM_022670441.1 mRNA upstream 1441 27999394 ~ 28013765 (+) True LOC111192652
XM_022670443.1 mRNA upstream 1441 27999627 ~ 28013765 (+) False LOC111192652
XM_022670442.1 mRNA upstream 3173 27999387 ~ 28012033 (+) False LOC111192652
XM_022670444.1 mRNA upstream 76817 27814215 ~ 27938389 (+) True ipo11
XM_022670908.1 mRNA upstream 236045 27778146 ~ 27779161 (+) True LOC111192712
XM_007247167.2 mRNA downstream 129859 28153462 ~ 28157559 (+) True c6h5orf51
XM_007247166.3 mRNA downstream 134707 28158310 ~ 28164602 (+) True fbxo4
XM_022670445.1 mRNA downstream 189094 28212697 ~ 28247485 (+) True ghr
XM_022670446.1 mRNA downstream 192288 28215891 ~ 28247485 (+) False ghr
XM_022670448.1 mRNA downstream 248896 28272499 ~ 28283827 (+) True znf131
TU74065 other upstream 155257 27837306 ~ 27859949 (+) False ipo11
TU73937 other upstream 302628 27703772 ~ 27712578 (+) True G54841
TU73818 other upstream 797203 27211302 ~ 27218003 (+) False LOC103030972
TU73727 other upstream 980268 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 992315 27020244 ~ 27022891 (+) True G54682
TU74355 other downstream 622461 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 622461 28646064 ~ 28649113 (+) False asphd2
TU74460 other downstream 730427 28754030 ~ 28754817 (+) True G55218
TU74882 other downstream 2505259 30528862 ~ 30550061 (+) True G55532
TU74844 other downstream 2598323 30621926 ~ 30625046 (+) True G55502

Expression Profile