RNA id: XM_007247192.3


Basic Information

Item Value
RNA id XM_007247192.3
length 2171
RNA type mRNA
GC content 0.45
exon number 11
gene id sept5
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27120811 ~ 27141616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACCGCACTTCAGCTCTACTCTGTTTATCCACCGTGGAAAAAGAGGGGGAGGAATGAGCGGGTGAATGAATGAGAGTTCTTTATTCCCCCTATTCCACCCCTCCCCTTTCCTGTGCCAAAATTGCTTCCTTGCCTCCTCTACCTTTCTCTTTCccgtccatctctctctctctctcgtcttttttctgttgttttttgtgaGCTTCACATGTGAATTCCTCCGCCTGCCTGTCTGAACAAGGAGACGTGGTAAATGCCGAGGGCCAGTACGAGAAGAATAGAAAACGAGGGGACGAAAACAGAGGGTGAAAGAGTGCAGCAGGTTTGAGGAGGGATCCCGAAGCTCTGGGCTTCTTTCGGGTGGTGTGCTGGTGGTGCTGGTATGGATGCCATCATGCTGCAGGAGAAGCTGGTAGAGAGGCTGCTCTGTGCCCGAGGCAGGACCACTCGACAAAagGACAAGCAGTATGTCGGCTTTGCTACACTCCCAAACCAGGTCCACAGGAAGTCAGTGAAGAAAGGCTTCGACTTTACTCTTATGGTAGCAGGTGAATCCGGTCTGGGCAAGTCTACTCTAGTCAACAGCCTTTTCCTCACAGACCTCTACAAGGACAGAAAGTTACTAAATGCAGAAGAGCGTATTAATCAGACAGTAGAGATTACCAAACACACTGTGGATATTGAGGAGAAAGGTGTGAAGCTCAAGCTCACCATCGTGGACACACCAGGGTTTGGAGATGCTGTCAACAACAATGAGTGctGGAAGCCCATCACTGACTACATTGATCAGCAGTTTGAGCAATACTTCAGGGATGAAAGTGGACTCAACCGGAAGAACATATTGGATAACAGAGTGCACTGCTGTCTCTATTTCATACCACCGTTTGGACATGGtTTAAGGCCAGTAGATGTGGAATTCATGAAGGCTCTGCATGAGAAGGTGAATATTATTCCCCTCGTGGCTAAAGCGGATTGTCTCACTCCGAATGAGATAAAGAAGCTGAAAGACCGGGTGCGAGATGAGATCGAGCGGTTTGGGATTAAAGTGTATCAGTTTCCTGAGTGTGACTCTGATGAGGATGAGGAGTTTAAACAGATGGATAAAGAGCTTAAGgaGTGTACTCCATTCGCTGTTATTGGTAGTAACACAGTAGTGGAGGCAAGAGGACAAAGAGTGCGAGGACGCCTCTATCCTTGGGGAATTGTAGAAGtggaGAACCAGTCTCACTGTGACTTTGTGAAGCTGAGGAACATGCTGATCCGCTCTCACATGCACGACCTGAAAGACGTGACGTGTGATGTACACTACGAGAACTACAGAGCCCACTGTATACAGGAGATGACCAGTAAACTTGCACAGGACAATCGCATTGACAGTCCTATTCCCATCCTGCCACTGCCCACTCCAGacgcagagacagagagacttaTCAAGAtgaaggacgaggagCTGAAGAGGATGCAGGAGATGCTGGAGAAGATGCAGCAACAGATGCACGAGAAGGACACAtgctgatcacacacacacacacacacatatacaacacACAAACCTCACCACAAACAGTACATCCAAGTGAGCAAACACcaatatagacagacagacagacatgtctctcttaATATCCTATACTGTATACTCTCCCATGTGAATGAATACAAATGCTCATATATGTATTATACCTGCAGACAGTGGCTCAGACTCGtacactgtatatttacagAATGATTTGCTCGGTGCTTCAGAGCCCTTGCCTGGCAAGTACAAATGTGATGCAGCTATTTAATGTTTCATATGTGTTTACGCCAATGTGAGTACAGCTAACATgggtaatataatgtaatattaatttaaattaaattgattttaGATGTAtctaatttatatttacttgattttggggtttttttaaCGCTTAGCTAGACGAATGTGCAAAAAGGTGTTTTGTAATGCCGTTTTAGCCGAACTGTTGGTTTGAATGTGGAAtggagtgtgagagtgtgtgtgcgtgtgaatgtgtgtgtgtttgaagaaATATACTTTTATGATGAAACCCTTTTATTCCTGTAAGCTGCTTAACTGCAGTCTTGGCTTTTTATAGTGCTAGCTCTCAGTGAATGTAGACGTACAGTGCAGGGTATTGTTATGAATAAATACGACTAAATCAAA

Function

GO: NA

KEGG:

id description
K04557 SEPT5, PNUTL1, CDCREL1; septin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73732 lncRNA upstream 81108 27046146 ~ 27049083 (+) True G54693
TU73720 lncRNA upstream 109997 27019061 ~ 27020194 (+) True G54686
TU73717 lncRNA upstream 159309 26969363 ~ 26970882 (+) True G54683
TU73705 lncRNA upstream 162004 26936159 ~ 26968187 (+) False G54673
TU73796 lncRNA downstream 5799 27147415 ~ 27578063 (+) True G54734
TU73799 lncRNA downstream 15330 27156946 ~ 27157648 (+) True G54735
TU73816 lncRNA downstream 84834 27226450 ~ 27236132 (+) True G54747
TU73798 lncRNA downstream 363542 27505158 ~ 27578063 (+) False G54734
TU73918 lncRNA downstream 522276 27663892 ~ 27668649 (+) False LOC107197454
XM_007247194.3 mRNA upstream 11491 27076367 ~ 27118700 (+) True LOC103046559
XM_007247199.3 mRNA upstream 70849 27050304 ~ 27059342 (+) True cdc45
XM_007247197.3 mRNA upstream 88653 27036124 ~ 27041538 (+) True ciao1
XM_007247204.2 mRNA upstream 111214 26974932 ~ 27018977 (+) True LOC103022969
XM_015605275.2 mRNA upstream 157179 26962965 ~ 26973012 (+) False LOC103023473
XM_007247191.2 mRNA downstream 13928 27155544 ~ 27160566 (+) True gp1bb
XM_007247190.3 mRNA downstream 22651 27164267 ~ 27181242 (+) True dhx37
XM_007247189.3 mRNA downstream 22755 27164371 ~ 27181242 (+) False dhx37
XM_022670902.1 mRNA downstream 46778 27188394 ~ 27206043 (+) True LOC103044927
XM_022670419.1 mRNA downstream 69939 27211555 ~ 27222867 (+) False LOC103030972
TU73727 other upstream 95253 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 107300 27020244 ~ 27022891 (+) True G54682
TU73715 other upstream 157165 26962892 ~ 26973026 (+) True LOC103023473
XR_002650058.1 other upstream 578621 26537052 ~ 26551570 (+) False LOC103040153
trnaw-cca_39 other upstream 1531443 25598677 ~ 25598748 (+) True trnaw-cca_39
TU73818 other downstream 69686 27211302 ~ 27218003 (+) False LOC103030972
TU73937 other downstream 562156 27703772 ~ 27712578 (+) True G54841
TU74065 other downstream 695690 27837306 ~ 27859949 (+) False ipo11
TU74355 other downstream 1504448 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 1504448 28646064 ~ 28649113 (+) False asphd2

Expression Profile