RNA id: XM_007247194.3


Basic Information

Item Value
RNA id XM_007247194.3
length 4539
RNA type mRNA
GC content 0.38
exon number 12
gene id LOC103046559
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27076367 ~ 27118700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTCACTCCGGCGCCACACACTCAAACGGGCGCTGCGGGAAGCAGGGCGGAATTACAGCGGCTTCCGGATCCCCTGGAGTGGCCTGGGAGAAACTGAGAGTAAGAAGGAGGACAGAAAAgttcctgttttgttttttaacaaacGGTTACTCTGAGGTTTTCGCCAAGTAGCTTCAGGCATGTCACAATCTGGAGAAAAAGGCAAGttcCCTGAGGCAGCAGGGTATGTAGGCTTCGCCAACCTCCCCAACCAGGTGCATAGGAAGTctgtaaaaaagggttttgaaTTTACGCTGATGGTCGTAGGAGAGTCTGGACTGGGTAAATCCACCCTGATCAACAGCTTGTTCCTCACTGACCTCTACCCAGAGCGCTACATACCTGGAGCAGCAGAAAAGATCGAGCGGACAGTGCAGATTGAGGCATCAACAGTGGAGATCGAGGAGAGAGGGGTTAAGCTCCGCCTTACTGTTGTGGACACACCAGGTTACGGAGATGCCATCAACAGTCAAGACTGCTTTAAAACCATCATCCAGTACATTGACAATCAGTTTGAGCGCTACCTGCATGATGAGAGTGGTCTAAACCGCAGACACATCGTGGACAACAGAGTTCACTGCTGCTTCTACTTCATATCTCCATTTGGACATGGATTGAAGCCACTGGATGTGGAGTTCATGAAAGCCATCCACAGCAAAGTGAACATTGTCCCCGTCATCGCCAAAGCCGACACTCTGACTCTGCGAGAGCGGGACCGCCTCAAGCGGAGGatCTTGGATGAGATCAGCGAGCATGGCATCCGCATCTACCAGCTTCCTGACGCCGACTCAGATGAAGACGAAGAGTTCAAAGAGCAGACTCGCGTCCTAAAGGCCAGTATTCCATTTGCAGTCATTGGTTCTAACCAGCTGATCGAGGTGAAGGGGAAGAAGATTCGGGGAAGACTGTACCCCTGGGGTGTTGTGGAGGTGGAGAATCCTGAACACAATGACTTCCTTAAACTGCGCACCATGCTGGTGACCCACATGCAAGACCTACAGGAGGTGACTCAGGACCTACACTATGAAAACTTCCGTTCAGAGAGACTGAAGAGAGCTGGCAGCAGAACAGTTGAAGAGGAGGTGCTTGACAAGGATCAGATCCTCTTGGAGAAAGAGGCCGAGCTGAGACGCATGCAGCAGATGATTGCTCAGATGCAGGCTCAAATGAAGATGAAGCCTGGAGACGACTGAGAAAAAAAgattgtctgtgtgtctgtccatCGTACTGTCTGATGTACCGATTGTATGCACTCCTTCACAAGATTTCTCTTAGTCTCTGTAGTCACTCCCTCTGTATACTCTATATAACTGTGGGTTCTTTTTCGATGCTGATCTGTTAcggttaatatatttaatagaaatattaattgtaaagtttgttttgtctgtctgacattcagtcattcagtcacTTCACCCTCCCAGTCTGACCCTGCAGGTGATGACTGATCTGTCTGACTGACTGATCCCCCTGTTTTACTCGGCATGCTGATATTCTACACATGCTGGGCTTCTTGTATCATGTTAATATCAGTCAGCTGTAGTGTGCATGggtcatttttatatattgtaagtAATACACCATGGTTTATGATTGTTCTCATAGTTCTTTCAGAAGAAGTGGTATACATATTAGTGTATTGCTTTGGGCACAGTTTTTGCCACACTGCCTCACTTTGTTCATTTTCTTAGCAGCTCATGCTGTACCAGCCACCTCACTGGCTTGAATCTCTGTTATGTGACAGTAGTGTCTTTTAGACAGATGGTGGCTATCAGAAACTATCTGAGGGCCACTGTGTACTCAAATAAATCATTTAGTtccagtttatagtcacatctTGAAAGAATTTACAGTATGATTAAGAGTAAACAGACATATTATCAGATATTCTTGTGTTTGTGTTAGTTTATGTTCCTGTAGTGAAATACAATCAGGTGCTGAAGTAATgcattctatatatatatatatatatgagcgaATAACTCGAAGAGCAGTATAGAAAAAGATGTGTTAACAACTAAAGATCAAGTAATAAAGAGTAGCCCATAACAGCAATGGATCAAACATGGCTTGGGCTTAAAATAGCTGATACCCATTCGAATAAAAGTGCCTAAATCAGTCATAATCTGGGTACAGTGGGTTGAAGAGAGAGTACTTAGTTCTGAGGTATAGTTTTGGGCCTAAAACCTATTTTTGACATACATGCAGGGTAGAAAGATACATGCAAGATTGTATAAGGTAAGCTCTACCCAAGaacttatttactttttatattactTATCATTTCATCATGCTCTTACACCTAGAGACAATCAGTCATATTTTAATGCATGTTATTGGACTATGCAGCTGTTGGTCTGTAATGTGCAGTTGTCACCAGTAGAGGGTAGTGGCCcctctttatttaaaatgagataATTTTTGTAATGTGGTGCATTTGCTCAGATTTGTTGAAATCCAGTCTTCCTTTGACCTGGGCTGCTTGTTTAAAGGGGAACTCCACCAATATTTCAGAATTTCTGCATAATTAAACTCATACATTTAATCAGGGTGATTTTTATACGGTATTGATAGGAAAATTAATTGTTTACAGACAAAGACcagacaaatgttttttttttagtttaatgctACTGTAAGAGCTACCTCACTGAACATTATTACACAAAGTGGTTATGAATATGTTGCCTGAGGCCTGAACATTTTGTTGTGTGAGTTTCTAGCAGAGTGTGCCAATTCACTTTATTGGCCATATCTTAATAATGACATTTGGCCAGTTACAGTGATATctttgtatttgtgtatgtgtaaaaaatacagacaCAGATTCAAAGATAAGATGTGCTGATAATTCATATATCTGTAAAATATAATGTGTCTCTTTGGGCTAAATTATATAGTCAAGTTAACCTTCTTATAAGTAACACTTTAATAGTGTAATTAATATCTCATAATACATTACAGGCTTAATGATCGCCCTAATAATTCATCagtaatgtttatatatatatatatacacatatataccttGAGGACAGCAGAGGGCGCTCTGCtagaatgattaaaaaaagcaaatgctcAGACCTGGTTTGAGCTTAAAATAGCTGATAACTGGTGTATTAAAATATGCTTGGATCAGTCCAAATTCCACAACACTACCTCAAAACCAAGTATGTCCCAATTTCCTATTTCTTTTAATCTGAAATGTATTTCAAAACTGTAGGATGTCAAATTATACCCAGAAAcgtattttgcttatttttattttatcaattatagtattttgtataaaaacTCAGAGGACATAGAGGTTCAATGTTGGGTTTGGATTGCAAATAAAGGGTTATATTTTCTTTGAATAGTAAAAAAATTCTATTGCAACTTCTATAAAGAAATCCAAATCGGTACTTTTTTCTGCATTACTGTATGTGATATCCGTCTTTACAActttctttacatttatatgACTGAATTGTGCagaaattttaaaagaaattggTGGAATTTgccttttaaatacaatttatccGGTTGGTTTGAAACCTATATTTTTTCATTGACGCTGTCCAAGGGGAAAACTAAAATGTTTCTCCATTTTGGTCTGTATTTGTTTACAACATCATTTGAATCATTTTGAAAAGTAGCCATTTTGGAGTTGGTTTCTCTTTGGACAGTGACATTGTgaattttaagtatatatatttcctaTGACCATACGAATAGATAATAATTTTACCGGCTTGTATGTGCATACTTTAAGCAGACTAGATGAATCCCAGCTgccatgctttaaaaaaaataaaataacacttatCGAACGTGATATCGTACTGAGAGgtttgtgttaaatgtagtgtgttttaaataaaactgcCAGTTAGCTATAACACACTCAATTTTTTAAGCCGTTTGGCGTGCcttaaacattttacacaaagGAACACTAGTCTCTGTACACAGTCTAAACTTTCATTACTTTATATTAGACATGGAGTTTTctactctttttattttctatcaTATCTTTGCTTTCTTCTAGTTGCTTAATATTCTACTGTAAATTGTAGAATCATCTGTGTCTAGCAGTGCCTAATTTAAATCGGTTTACTTATATTTGGCAAcatatatttgtttcttttttttatttacttgttcATTTCCACTGACttgagaaaataaatattaaggTATCGAAAGTCAGAGCGAGTATGTATGTAGAGGTGGGAAACTACTGCTGCCCGCACGTCCATGTTTGTCCTGTTGATGCATATTCTCCCATTCTTCATCACTGAACTCATTAGGCTTTTCTAAACAAGCTGATTTTGTTGTTCTGCAAATTTTGTTGTGGTCAAGCCTCGTTATTTTGGTTGGCCATCTCCTGTTTTTGAATTAACTTAATTTTTCTTGTTGCATGTCCATGGTACAGTTAGAGCTCACTTCCATGTTTTAAAATGCTCActtttgtacttattttaaataataaatcctAAAACATT

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16942 SEPT2; septin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73732 lncRNA upstream 27284 27046146 ~ 27049083 (+) True G54693
TU73720 lncRNA upstream 56173 27019061 ~ 27020194 (+) True G54686
TU73717 lncRNA upstream 105485 26969363 ~ 26970882 (+) True G54683
TU73705 lncRNA upstream 108180 26936159 ~ 26968187 (+) False G54673
TU73796 lncRNA downstream 28715 27147415 ~ 27578063 (+) True G54734
TU73799 lncRNA downstream 38246 27156946 ~ 27157648 (+) True G54735
TU73816 lncRNA downstream 107750 27226450 ~ 27236132 (+) True G54747
TU73798 lncRNA downstream 386458 27505158 ~ 27578063 (+) False G54734
TU73918 lncRNA downstream 545192 27663892 ~ 27668649 (+) False LOC107197454
XM_007247199.3 mRNA upstream 17025 27050304 ~ 27059342 (+) True cdc45
XM_007247197.3 mRNA upstream 34829 27036124 ~ 27041538 (+) True ciao1
XM_007247204.2 mRNA upstream 57390 26974932 ~ 27018977 (+) True LOC103022969
XM_007247206.3 mRNA upstream 103355 26962899 ~ 26973012 (+) False LOC103023473
XM_007247193.3 mRNA downstream 2111 27120811 ~ 27141616 (+) False sept5
XM_007247192.3 mRNA downstream 11491 27130191 ~ 27141616 (+) True sept5
XM_007247191.2 mRNA downstream 36844 27155544 ~ 27160566 (+) True gp1bb
XM_007247190.3 mRNA downstream 45567 27164267 ~ 27181242 (+) True dhx37
XM_007247189.3 mRNA downstream 45671 27164371 ~ 27181242 (+) False dhx37
TU73727 other upstream 41429 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 53476 27020244 ~ 27022891 (+) True G54682
TU73715 other upstream 103341 26962892 ~ 26973026 (+) True LOC103023473
XR_002650058.1 other upstream 524797 26537052 ~ 26551570 (+) False LOC103040153
trnaw-cca_39 other upstream 1477619 25598677 ~ 25598748 (+) True trnaw-cca_39
TU73818 other downstream 92602 27211302 ~ 27218003 (+) False LOC103030972
TU73937 other downstream 585072 27703772 ~ 27712578 (+) True G54841
TU74065 other downstream 718606 27837306 ~ 27859949 (+) False ipo11
TU74355 other downstream 1527364 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 1527364 28646064 ~ 28649113 (+) False asphd2

Expression Profile