RNA id: XM_007247917.3


Basic Information

Item Value
RNA id XM_007247917.3
length 3720
RNA type mRNA
GC content 0.46
exon number 3
gene id kiaa2013
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41305310 ~ 41315208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACATTTAGCGCCTACAGTAGAGTAGGGGAGAAAATAAGCTACAGGGGAGGCTGATCTGAGACCAGCGCTGTGTGCACATACAACCACGACACTTCCGTGTACCAACCGACCTGCTGTGGTCTGACAACATTCAGATACAAACCAGAAATGTCAGAATGGGCTGCTGAGCTGCGCGGCTAGCGGCTGAAGTAATGGAGCACTGGTTGGTTTTACAGCTGGAAGAAGACGGAGAACGGATTGGAAGTGTGTGGTTAGAGCCGCAGTTTGATATTTAATGGAAAACGACGTCTCTTATAGACTTCTTTAGTTAGCttgctaagctagttagctcgCTAGGCTAAGCGGCCAAGAGATGGCCAAGCTAGCAGTCAGCTGACTGACTGACGAGCTTGCTAAccacttagcttagctggctaacGCTAATTAGCTAGCCAGCAAAGTTTCAGGGGTAAGAAACTAGCTGCAGTTTGTGTACAAgctaaacattattatttgtatagTATTATAAGGCTTGACTATTTCAAATTGGACGTTCTTTAAGTTCAGGGCGTTAAAAAGCTAAGAAGAGAGCAGTGAGCTGgctggagaaaaaagaaaaaaattaatacatagcatgttagctagcaaAACTAACTCTAAAACGAACTTTTCTGTAGAATGGCAGTGAGAAATTTCACGGTCCTGCCAGACTTTGCTGTCATTTGTTTGTTCCCAAGCCGTCATTCATTTAAcgttagctaaagttagcttaGTTAAGTGAAGGTTCTCACACCTCTGCTTAAAACTGCCACCCCACTCCTAAGCAGCAGCATTAATAGCTATCTGTTATCTATCAGGTGTCAGGAAGTCTGTTGTTGACCCCTTTATTAACTTCTCACATCTCACACTTTTATTGCTTGGTTTAGCTAGTTTAGCTCCCTCTAAAGAAAGAGCAATCATTAAGTGGTCAAAGGCCAGTAAGGAGCAGTTAGAAGCCATGTGGCTCCAGCAGAGGTTAAAAGGACTCCCCAGCTTGCTCTCAAGCAGCTGGGCCAGGCGCATGCTTGTTGGGCTGCtcctctttctcattttctactgGTATCTGAGCTCAGATGGGATCTTGAAGCTCCTAAGCTTCTCTGGTGAAactggaggagctgctggactCTGCCTCCAGACTGATGTCAGCAGATGGACAGCACTTGTTGAGCGGGGAGAGGGCATCATTAACACCCCCCAGACGAAAGAGGCTGTTCCATTTGTGACAGGTAACGGACACTTCCTGGTCGATGTGGATTCAAACAAACTCTGGGTGACCTCATCCCTGCAGCCAGGTTCAGCCCCAGTTCACCAGTCAGAGTATTCTCCTATAGTAAGATGGCAGGTGGCTGGGAAGCGAGCCGAGGCCCAGGCCAAGATGCTGTGGTACCGGAAAGGCTCTGTGCTGTCTTCCCGGTGCATCCTCCTGGGCAGCTCCCAGTCTTCCCGGGACTGTGTCATCATCCGGGAGGAATACATAGCCCATCGTAGCAGACCTAATGTCTACCTTCAGAGGGTTCATATAAGGAACCCAACAGACAAATCAGCATCAGTGGAGGTGTCCATGGACTCGCCTAGTTTCCGCAGCATTGCCGAGAAGGTGGAGGACAAAGAGTTCATGCTGTCCTCTGGAAAAGTTCTCACAGAAAGGAAGGACATAGTCTTGGTGGCTGTTGCCTCAAAAAGACTTAGCACGAGGTTCCAGATCCCTGCAAAGTCTGAGCACACTGAAAGCATAGTGAGTGTCATTCACACTTCAGAGCCCATCGAGCCGTCCAAGGTGGACGAGACCTTCGGAAAGCTTCGAGAAGCTGTCAGGAGAGAGATGGCGGAGGTGCTGCGAGCCAATGTGGATGATCTTGTGGAGGAACATCAGCAGGCTTGGATGGATCTTTTCATATCTGgTGTGGAGATCAGAAAAATCACGGATGCCCACACTCCCTCAAGCCGCACAGTAAACACTACCCTGTACTACATCCTCTCAGCCTCTATGGCGCCCCTGCTGGACAGTGGTATCACTGCAGAGGAGCACGACAGGCTAGAGTCCAGCCTGAACTATGCGGACCACTGCTTCAGCGGCCACGCCACCATGCACGCCGAGAACCTTTGGCCAGGACGGGTGAGCAGCGTGGCTCAGATCCTGCAGCTGGTCAACCTCTGGACCCTGACCCTCCAGAAGCGAGGCTGCAAGGTGCTGGTGGCGGCTGGCACACATGGACTGATGCAGGGCATGGTGTTGAGTTTTGGTGGCCTGCAGTTCACAGAAAATCACCTGCAGTTCCAGGCAGACCCAGAGGTCCTGCACAATAGCTATTCTCTGCGTGGCATCCACTACAACAAAGACCTGATCAACCTGGCTGTTCTGCTGGATGCAGAGGGCAAGCCGTTTCTGCACGTGTCCGTCAAACCCCAGGAGAAACCGGTGAAGTTGTACGCCTGTGAGGCTGGGTGCATGAACGAGCCCGTGGAGTTGACCTCCGAGTTGCGTGGCCACACTTTCCCAGTAATGGTGACTCAGCCCATCACGCCTTTGTTGTACATTTCCACGGATCTGACGCACCTGCAGGATCTGCGGCACACGCTGCACGTGAAGGCCATCCTGGCCCATGAGGACCACATGGCCAAGCAATACCCAGGGCTGCCCTTCCTCTTCTGGTTCAGTGTGGCTTCACTCATCACCCTCTTCCATCTCTTCCTCTTCAAGCTCATCTACAACGAGTACTGTGGGCCAGGGGCCAAGCCGCTCTTCAGGAGTAAGGTACTGAAGACAAACGATGAAACGGAACTGTAAGATCATCCCATTCAGCAAGTTCGAAGGACAACGATGGAAAAATGTGGAAACAAGTATGTTCACTTGGCGTCATCTTTTCAAAATCCTCAGGCATCTCTTTGAATAGGGAGATTCCGAAACTATACTGGAATACTGATGGTCACATTACCTTTTGATCTACATATTTCAAACCACtgttaaaatctgattaaaacctTATGATTAACATCTAGCATTTTGCTCAATAATTGCACAAACATGATTTTCCAGCTTAAAAATTTCTACTGTCAGATCTTCACATACCTGATCACAACATAACATTTGGCtgtgctttttaaaatgcaagAGTTTATTTGACTGTAAGACTGCAAATTATTGCACCTGTTGAGCGTTACACAAATTTttgtcattaatttattttcttaaagtaaggggaaaaaatgagagaccatttaaaaactttgattttaccaatgtgaaaacctctgaaatataatcaagaggaagatggatgatcacaagccatgctTTTTGTTTTGATTGTGTCACTAAAATTTTCTTTTCTCTGGTCTGGAGGTGTATGTACCACCTAGGCATTCCACTAGGTGGTAGTGTCTCCAGTAAATTCTGAAAGAGACTTGGGTTCAGCACCACAGATTTTCTCATTTGCCTCATTTGCCTGACCTTATcatgaaacaaaaaatgtaaaaatttaatttgaaaCAAATCCAGGCAATATTGACTCATATTCAGTTTATTAGAATACATATAAACTTTTTGGTTATTACATTTTAGGtgcttttggtttgttttatctAAATTCATGTTCTAATGAAATGAAGAATAACTAATGGttaacacatacagctctgaaaaaaaaatgaaagaccatttaaaaactgtgattttaccaaagtgaaaacctctgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78188 lncRNA upstream 8638 41294584 ~ 41296674 (+) True G57987
TU78166 lncRNA upstream 49873 41252811 ~ 41255439 (+) True G57972
TU78159 lncRNA upstream 57771 41245137 ~ 41247541 (+) True G57967
TU78157 lncRNA upstream 66643 41238321 ~ 41238669 (+) True G57965
TU78052 lncRNA upstream 229936 41072386 ~ 41075376 (+) True G57880
TU78281 lncRNA downstream 263113 41578321 ~ 41579048 (+) True G58054
TU78306 lncRNA downstream 375913 41691121 ~ 41691388 (+) True G58074
TU78335 lncRNA downstream 443075 41758283 ~ 41763578 (+) True G58096
TU78357 lncRNA downstream 694838 42010046 ~ 42030054 (+) True G58114
TU78430 lncRNA downstream 720742 42035950 ~ 42053889 (+) True ndufa7
XM_015605502.2 mRNA upstream 556573 40720804 ~ 40748739 (+) True wrap73
XM_007241280.3 mRNA upstream 752161 40543509 ~ 40553151 (+) True LOC103023889
XM_022670672.1 mRNA upstream 774319 40512253 ~ 40530993 (+) True LOC103024512
XM_022670960.1 mRNA upstream 818738 40483010 ~ 40486574 (+) True LOC111192734
XM_015601668.2 mRNA upstream 1020011 40258521 ~ 40285301 (+) False LOC103035984
XM_022670698.1 mRNA downstream 3517 41318725 ~ 41335582 (+) True LOC103039684
XM_022670700.1 mRNA downstream 3517 41318725 ~ 41335582 (+) False LOC103039684
XM_007247923.3 mRNA downstream 59481 41374689 ~ 41377445 (+) True LOC103032352
XM_015605497.2 mRNA downstream 74411 41389619 ~ 41390496 (+) True nppa
XM_007247924.3 mRNA downstream 80933 41396141 ~ 41398105 (+) True LOC103032860
TU78022 other upstream 624757 40675040 ~ 40680555 (+) True G57856
trnaw-cca_40 other upstream 705250 40599991 ~ 40600062 (+) True trnaw-cca_40
TU77738 other upstream 1258845 40044653 ~ 40046467 (+) True G57664
TU76991 other upstream 4299514 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 5341993 35956104 ~ 35963319 (+) False G56701
TU78217 other downstream 59611 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 122819 41438027 ~ 41438911 (+) True G58025
TU78429 other downstream 720742 42035950 ~ 42038982 (+) False ndufa7
TU78480 other downstream 893513 42208721 ~ 42281970 (+) True G58211
TU78548 other downstream 1261984 42577192 ~ 42626114 (+) True G58256

Expression Profile