RNA id: XM_007247931.3


Basic Information

Item Value
RNA id XM_007247931.3
length 2618
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC103035003
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41910748 ~ 41934572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGATCACAGACCAGGGCTTGCTTATTCCTGATTTGTTCCAAACCTCTTTCTCACTGGTTTCGAAGCACGCTCCCATGCAGTTGGCAGAATACAGCAGGATGGCATCACTGGGGCTCCTCGCGCTCACTGCGGCACTGTTGGCTGGGGTCTGCACTGCAGaaccACAGCCATTAAAGGTGACCACCATTAAGCAAGAACCGTACGCAATGTCCAAAGGCACAGAACTGGAAGGCTTCTGCATTGATCTGTTGTCTGCGCTTGCCAGTAAATTGGGTTTCAAGTACGAGCTTCACGTGGTGAAGGACGGGAGATATGGGGCCAAGAACGAACAGGGCACCTGGAACGGCATGATCGGAGAGGTTTTCAGACGGGAAGCTGACCTTGCTGTTGCCCCGCTAACCCTCACGGCCTCACGGGAGGCAGCTGTGGACATGACCAAACCTTTCATGCAGACAGGCCTGAGTTTCATCATGAGAAAAGACATCGCCTCCGACGACTCTCAGTATCTCAGCTTTTTGAATCTCTTCTCCACTGAAATGTGGCTGGGTATCCTGGTGGCTTATCTGCTAACCTCCTTTTGTATCTATCTGGCAGCACGgATTAGCCCATCTGAATGGGAGAAACCCCAAGCTGACGAAAATCaattcacactctcacacagctTCTGGTACACTGTCGGGGCCATAACTCTGCAAGGAGCGGGCCCTCACCCCAAGGCCTTGTCAGGACGGCTGATTACTGCCATCTGGTGGTTGTTTTCACTGATGGTCCTGGCCTGTTACTTCGCCAACCTCAGTGCCTGGCTTCATTCAGACAGTAACCAGCTGTCAATCAAGAGCTTTGAAGACCTAGCCAACCAAAACATTATTCAGTATGGCACAATCAAGGGCTCTTCTTCTCTTAACTTCTTCAAGAATTCCAACAATCCCATCTATCGCCGGGTCTATGAGAACATGGAGAGGCAGCAGAGCTATGCGCAGTCGATGGATGAGGGCGTTCGTAGGGCTCAGGAAGGGAATTACGCCTTCATCGGGGAGTCTGTGTCTCTGGACCTGGTTGTTGCACGTTACTGTAATCTGATTCGCTCTCCTGATGTCGTCGGCATGAGAGGCTACAGCATTGCTGCTCCTTTAGGCTCTCCTTTGATGAAAAACTTGAGCGTGGCCATCCTCCAGCTGAGCGAGTCCGGAGAGCTGGATTACCTCCGCAGCAAGTGGTGGGCCAGCAGCTGCGTAGCGGAAAATGCCCAGGCCTCGCCTCTCAAGGCCAGCAGCCTGAAGGGAGTCTTCCTACTGCTGGCGCTCGGCCTGGGCCTGGGAGTCGCTATGGCCCTCATGGAGCTGGCGGCCAAATCACGAAGCATCGCTAACACACAGCAGAAATCATGTTGCTCTATCTGGTTGACTGAACTCAGTCAGCGATTTGGAAGAAAGGAGGAGAAGACGTCgtcagaaacagaagaaaaatgcAAAGCTTGAACCTGCGCAGGACTAACATAGAACATCCTTGGGTTTCTGTTCACATATTCAGCTGTTTttcatctctgttttaaaaaaaaaagctgttactAATGACTTTAGAGACTGTGCTAATGTAAGAAACAGATTTCATTTCTGCATGTATGTAACTCATGTATTCATGTATGGTAACTAGAGATGCAccgaaatgaaaaaaaaggccAATACTTAACAAAATTAAGGTTTTTGGaggttttcattaattttcGTTCATTTCTTTGTTGAATAAAtgaaacagctaaaaaaaatgtaaacgttTTTTATGTCCCTGCAgacaaactaaacaaagcacaatatatttaagtgctgttttaatcatgaaatcattttagcagtgctattctagtcatacagtaaatgtacctcagcagtgctactgagGACACATTTGAGTGAAATTTACACAAACATAGCCAGTCAGTCTTTCGCTAAACAAACAgatgctaaggctaagttatTTAAGCTAATGTTACTTTCTTAGCCCTCTACAGCCTGTTATGTTTCAGCTAAAAAATAGGCAGTTTGTGGAAGGTTTGTTAACTCAACCCTAGCATAAACGTATGTCAAGTTATGCTACCTATCGATATATGCTACTGGCACTGCGTATGCCTCCGTTCCTCCATTATAGGAAAAAATAAACTTGATATAcctaaaacaaactttttttcacTAATTTGGCCCCACATCTCACAATactttttccctttttatttgtggttgccaaatattcggtgcatcactaataataacaacaacacaaCATACAGAATTAGGTCTTATTTGGATGCTGCAGGATACTGTTCATTATACTGTTCAACCATAGACATGAGTGCTCTTGAAAAGTTACATATGATTTATTGCATTTAACTGTGCTTATGATATAGAGGAAATAGTAACATAGAGAAGAGTGAATAGTAAATCATTTCTACCTATCAGTTACTTATAAGTGAGTTTTATTCCCATGTAGCTTTTAGTGAGTAAACTTTGGTGCTAGTGTGGCTTGAAAGAAGACTTGTGAATGAGAAGTTTTATTGCTTTTGTACTGTGATATAACAGGCAAAATAAAAGTTACATGCTACCTTTTTATGCTTACATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78335 lncRNA upstream 147260 41758283 ~ 41763578 (+) True G58096
TU78306 lncRNA upstream 219450 41691121 ~ 41691388 (+) True G58074
TU78281 lncRNA upstream 331790 41578321 ~ 41579048 (+) True G58054
TU78188 lncRNA upstream 614164 41294584 ~ 41296674 (+) True G57987
TU78166 lncRNA upstream 655399 41252811 ~ 41255439 (+) True G57972
TU78357 lncRNA downstream 75474 42010046 ~ 42030054 (+) True G58114
TU78430 lncRNA downstream 101378 42035950 ~ 42053889 (+) True ndufa7
TU78434 lncRNA downstream 115569 42050141 ~ 42051109 (+) True G58177
TU78462 lncRNA downstream 193618 42128190 ~ 42131034 (+) True G58201
XR_002650088.1 lncRNA downstream 431560 42366132 ~ 42422813 (+) True LOC111192688
XM_022670704.1 mRNA upstream 7125 41785640 ~ 41903713 (+) True plch2
XM_007247925.3 mRNA upstream 457875 41440699 ~ 41452963 (+) True mthfr
XM_007247924.3 mRNA upstream 512733 41396141 ~ 41398105 (+) True LOC103032860
XM_015605497.2 mRNA upstream 520342 41389619 ~ 41390496 (+) True nppa
XM_007247923.3 mRNA upstream 533393 41374689 ~ 41377445 (+) True LOC103032352
XM_022670705.1 mRNA downstream 13447 41948019 ~ 41977048 (+) True dpp9
XM_022670707.1 mRNA downstream 13447 41948019 ~ 41977048 (+) False dpp9
XM_022670706.1 mRNA downstream 13448 41948020 ~ 41977048 (+) False dpp9
XM_007247935.3 mRNA downstream 101267 42035839 ~ 42038914 (+) False ndufa7
XM_022670708.1 mRNA downstream 107755 42042327 ~ 42059412 (+) True LOC103027292
TU78242 other upstream 471927 41438027 ~ 41438911 (+) True G58025
TU78217 other upstream 533408 41374819 ~ 41377430 (+) False LOC103032352
TU78022 other upstream 1230283 40675040 ~ 40680555 (+) True G57856
trnaw-cca_40 other upstream 1310776 40599991 ~ 40600062 (+) True trnaw-cca_40
TU77738 other upstream 1864371 40044653 ~ 40046467 (+) True G57664
TU78429 other downstream 101378 42035950 ~ 42038982 (+) False ndufa7
TU78480 other downstream 274149 42208721 ~ 42281970 (+) True G58211
TU78548 other downstream 642620 42577192 ~ 42626114 (+) True G58256
trnar-ucg_3 other downstream 904266 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78895 other downstream 1726210 43660782 ~ 43661647 (+) True G58529

Expression Profile