RNA id: XM_022670711.1


Basic Information

Item Value
RNA id XM_022670711.1
length 2066
RNA type mRNA
GC content 0.59
exon number 7
gene id LOC103037059
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42087388 ~ 42177716 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtatgaagagGCTGCGCGAGCGAGCACGGCGGAGCGCGCGGACCGGACCGAACGCTTTCCCCGCGCGCGCCTATGAAGGGCGGTCGGTTTGGGATGTGAGTGAATGAGGGGGACTCGACGCGATGAGGGATGTATCGTCAGCCCACCACGTCCGGCCGCATGGTTGCCATTTTCCTCGCGGGGCGACGGTGCCGCTGCGCCGAGCCGCTCTTTAAATTggaataaagaaacaaaaggaGGCTGTGTGGACGTAGCGCGAGCGTAGCGCGAGCACAACGCGAGCCGACGACCAACGGGGGTCTGCCTTTCGACGGTATCCAGTCGAGATGTTTTGACTCTGGCCCCTCCCCATCCGACCCGTCCAGGAGAAGGCCCACCTGCCCCAGTAGGAATGCACCCTCTGGCCTGGCGCCAAGCTCCGCCCGCCGTCACGCCCACCGCTCCTCTTCCTCTTGCCTTCCCACCCCCTGCCGCCATCACCACCATCTGCAGGCTCCTGCACCATGAAGGATGAGGTCATCAGCACCAACGCGCTGCCCTGGCTGGTGTGCTCAGGTGTGTCCATCCTGGCCAACGCCTGGGGCATCCTGAGCGTGAGCGCCAAGCAGAAGAAGTGGAAGCCGCTGGAGTTCCTTATCTGCACGCTGGCCGGCACGCACATCCTCAACATGGGCATCCCCATCACCATGTACTGCGTCATCCAGCTGCGGCGCAAGCACTCCAGCTACGAGTGGAACGAGGGCCTCTGCAAGGTCTTCGTCTCCACCTTCTACACCCTCACCCTGGTCACCTGCTTCTCAGTCACCTCCCTGTCCTACCACCGCATGTGGATGGTGCGCTGGCCTGTCAATTACAGgttGAGCAACACGAAGAAGCAGGCGGTACACACAGTTATGGGCATTTGGATGGTCTCTTTCATCCTGTCCACCCTGCCCGCTGTAGGCTGGCACGACACCAGCGAGCGCTTCTATGCCCACGACTGTAGCTTCATCGTGACAGAGATTGGCCTAGGCTTCGGCGTCTGCTTCCTGCTGCTGATCAGCGGCAGCGTGGCCATGGGCGTCATCTGCATTGGCATCGCCCTTTTCCAGACCTTCTCCATCCAGACCGGACACAACGTGGACAAGAACAAGTTCAACGTGCCCACGATCGTAGTGGAGGATGCGCAAGGCAAGCGGCGCTCGTCCATCGACGGTTCAGAGCCGATCAAGACCTCACTGCAGATTACCTACCTGATCAGCGGCATCGTCTTCATCTACGACTTCCTCACTGGTTTCCCCATTCTGgtGGTGAGTTTCGCTAGTCTAAGGTATGACCGCTCCTACAGCTGGATGGTGCTGTGTGTGCTCTGGTGCTCCATAGCTCAGTCCATCCTGCTCCCCATGTTCCTCTGGGCCTGCGACCGATACAGGGCTGACGTCAAGATGGTGTGGGAGAAATGTGTAGCTATTATGTCCAACGACGACGTGGACGAAGAAAACAGCCAGGATGGAGGCATTCATCCGGACTTAATATATGACAGACCATATGACTATAGCTCCGCTGCTGATATCATGACGGTAGACCGTATTGCCAAGTACGAATTCTCAACCTTAGAAAGGGGGGTCCCCCAGGGTTATCCATTGAGGGAGCATCAGGAAGATAAAATGCACTATTTGCAGTTCTCAGAACAATGTGGAATGTGCCCCCTACAAGAAGATACTCCCACGACGAAACCGACATGTGGACCACCGGTCAGATCCCTTCATACCTGCACCGCTGGGGCTCCACCGAGGACATGGTGGGAATGCAGCAGTACAGCTCGCAGCGCCACGAGAGGCGGCGGAGCAGCCAGGTGTCCTACCACGAGGAGAGCCGCCCGCAGCGCTCCCGCAGGAGGTCTGAGGACACGCACTGTCTCAAGCAGCTGCCCCGTGCTGACCGCTATGAGGATGAGTTCAAGTGCTTCAGTCGGGACGAGGTGATCAACTTCATCGACGAGACGCCGCTGCCCAGCCCCATGAGGAGTCCGCGGCGCGCCTCTGCCATCTCGCTGGTGCCCGATGCCTTGTACGAGCAGCATGT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78448 lncRNA downstream 6116 42082267 ~ 42082568 (-) True G58191
TU78441 lncRNA downstream 34795 42052877 ~ 42053889 (-) True G58184
TU78442 lncRNA downstream 36149 42051950 ~ 42052535 (-) True G58185
TU78411 lncRNA downstream 177574 41910783 ~ 41911110 (-) True G58159
TU78395 lncRNA downstream 185006 41900110 ~ 41903678 (-) True G58149
TU78510 lncRNA upstream 146119 42323835 ~ 42324250 (-) True G58236
TU78701 lncRNA upstream 386405 42564121 ~ 42564555 (-) True G58387
TU78709 lncRNA upstream 434379 42612095 ~ 42612861 (-) True G58394
TU78729 lncRNA upstream 666214 42843930 ~ 42916392 (-) True G58400
TU78733 lncRNA upstream 694937 42872653 ~ 42873760 (-) True G58404
XM_007247932.3 mRNA downstream 54440 41979557 ~ 42034244 (-) False LOC103035734
XM_015605499.2 mRNA downstream 54441 41979557 ~ 42034243 (-) True LOC103035734
XM_007247928.3 mRNA downstream 560794 41516965 ~ 41527890 (-) True pex10
XM_022670930.1 mRNA downstream 575597 41493604 ~ 41513087 (-) True LOC103034037
XM_022670702.1 mRNA downstream 595013 41457996 ~ 41493671 (-) True LOC103033502
XM_022670713.1 mRNA upstream 31000 42208716 ~ 42389129 (-) False acot7
XM_007247940.3 mRNA upstream 31000 42208716 ~ 42389129 (-) False acot7
XM_007247941.2 mRNA upstream 31000 42208716 ~ 42387365 (-) False acot7
XM_007247939.2 mRNA upstream 31000 42208716 ~ 42387361 (-) True acot7
XM_007247942.3 mRNA upstream 31000 42208716 ~ 42379513 (-) False acot7
TU78238 other downstream 690206 41396086 ~ 41398478 (-) True G58022
trnaw-cca_41 other downstream 1482584 40606029 ~ 40606100 (-) True trnaw-cca_41
TU77868 other downstream 1909618 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 1969589 40117789 ~ 40119095 (-) True G57727
TU77625 other downstream 2525793 39560460 ~ 39562891 (-) False LOC103030299
TU78780 other upstream 925154 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 1504608 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 2190184 44367900 ~ 44368368 (-) True G58649
TU79103 other upstream 2296443 44474159 ~ 44477666 (-) True G58678
TU79140 other upstream 2442591 44620307 ~ 44622074 (-) False snrnp200

Expression Profile