RNA id: XM_007247961.3


Basic Information

Item Value
RNA id XM_007247961.3
length 2759
RNA type mRNA
GC content 0.38
exon number 8
gene id LOC103043615
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43017361 ~ 43029077 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATACAGTGTGGTTATGAACTAAACATAGAATATGATTCAGGCTCTGCTGCAAACATTAAGGGCTTAAACCCCATAAGCGCCCCACAGTTCCCAcacacaatgtgtgtgtgtgtgctatacACCAGTGGCAGTGACCTACAAAGAGTTAGCAAACAACAAGTCCAGGACTGCAGTGATTAGAGAGTAATAAGTAAAGAGGAGGAGATACATCAGCCTGATAAGAATTACAGCAGTGCAGAGCTAAAATCTACAGCCGTGTTTAATCAACTGAGAAccaagaaagagaagaaagcgTGAAGCAAGAAGAGGattttataaaaatacttttatagcCTTTATATCATTATGGATCCTGACTTTCTGTCGTCAATCACTAGACCAGAGGTATATGATTTTGAGGGCGTCTCTATGATTCCCTGCTTTACGATGAACTGGGTGAACATCCAGAAATTCCAGGCCAGACCAGATGACATCCTCATTGCCACTTACCCTAAAGCAGGAACTACCTGGGTATCCTATATTTTGGAACTGCTCTTCTTTAGTAAATTGGGAGCAGAACGTCAGAAGACGATGCCCATCTACATGCGAGTTCCCTTCCTTGAAGGCATTTTTCCAGGGTTACCTACAGGGGTGGAGCTGGCAGATCAGCTGCCCACTTCTCCACGGCTCATCAAAACTCATCTTCCTGTTCAGTTGGTCCCCAAGTCCTTCTGGGAACAGAACTCCAGGGTTGTCTATGTAGCTCGTAATGCCAAAGACAATGCTGTGTCTTATTTTCACTTTGACCGGATGAACAAGGGACAGCCTGATCCCATAGACTGGAGCACTGATCTACAGAAATTTATGGATGGAAAGAAGGTGTTTGGTCCTTGGTATGATCATGTGTGTGGATACTGGGAGAAGAAGCAGAcctactcaaatattcactacaTGTTCTTTGAGGACATGGTGGAGGACACGGGGCGTGAGGTGGAGCATTTGTGCTCCTTCCTTGGTTTGTCTACACCaatagaagaaagagagaggattaCGAAGGGCActcactttgacacaatgaagcTCAACAACATGACCAACTACTCTACAGTTCCAGTCATGGACTTCAACGTTTCTCCATTCATGCGCAAAGGTAAAGTCGGAGACTGGAAGAATCACTTCACTGTGGCTCAGAACGAGCGGTTTGATGAACACTACAAACAGAGGATGAAGAACACCACCCTCCAGTTCAGAACACAGATATAAAGGCTCCAAATCATGGAAACATTTTTAATGGGCTTCAGGAATTTGTTTATATGAAATCATGAAAACCAAGGCATTTACACATACTACAATTTACACTATTGCAGTTTTATTGTTTCTGTAAATAGTAGGCGAGGAAATGCTCTCTAAAAGGCTTCTCTAAAAGAtttaaacttattattattttaatttcaacTTTTAAATCCCCAGGTGTAATAAATATGCATTAATACACATCAAACCTAGTGACAATCAGCAGCCATTTAAAGAGCCTTTAAGCATTTGCCCATGACTCTGATCCTTAAAATATCTGTTCACAAAAGagcaaattaaaaaagttaattcaTTCTGCAACACATTGCAAAAACATTTGGGCAAAAAAAATACCTTATCCACAAAATGCTTTAAGGAGCAAATATCTCCAGTTTCTCAAGAAATGCTTTTGAAAAGTATAATTTGTCATGAGTTTGTGTCagtacacttttttaaataagacaatgcaaaaccacatgctgcacacattagaAAGGCATGTCAGAAGACAGCAAAAAAACCTCAAAACACTTTGACGCTTTGTATCGTCTGTGCCAAAACAACTTAGCAAAGTGATGTGACAAGGAATAGCAATATTGCAAAGTgccaacattttaataaaaatgtgttacaggcccaaaatgcaaaaatggatgtatattaCATGGATTGAATATTCATACTGTCTACATTGAaataaagggttttttttttttgcatttgcacACTGTACTCcatacatttctatttttttctgattgggGATGTAATAAACTCATACTTTTATGACATTATTACTTAAAACCTAgatgttatataatattatacttGCAAACTTCATTGCAAACaagatacatattatatatgataAGCAGAAAGTTTTTGCTGATTGCTAAAGAAACCACACCCATACTCGATCAAATGACCAAGAGAGTGAACAAACAAGAAGCATAAACCTGGCCACAAACTCCTCCACCCTTGGGAGTTACCCAGAACTGTGTGTTTTACGGAAGTTGTTAAATAATTTAGAAGATCAAAGTTTACGTTTTCTTGGCACTGTACTTGCACTGATATATCACCATTATAACCACCATTTCAAATGCATGATTATTGCtgtagaatttctattggtttattGGAGCTTAGAATTTGCTAATAAAGGTGTttagggcaaaacaaaagagatCACCAAcccttatttttctttaaaattctcGAAGATTTATTTAGTTGGGTTTTGAATTGTGAGcgaattttgtcatttttcattaaaaaattatcatttaCATGCTATACTTGACCTATACAAGGCTAGTCAAGCTTAGAAAGCATGATACAATTACAAGGTGAATTTTAGAACCCATTAATGCATTACAATTGCCATATTTCTTTGGTGCATTACAGATTAGAGGTTCCTCTAACAAATTGTATTAAAAGCCGGCCTACACTAGGCTTCTACTTATGCTCTGTTCCATTTAACTTAATTG

Function

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650117.1 lncRNA downstream 63977 42952416 ~ 42953384 (-) True LOC111192735
TU78743 lncRNA downstream 82164 42922459 ~ 42935197 (-) True G58411
TU78729 lncRNA downstream 100969 42843930 ~ 42916392 (-) True G58400
TU78733 lncRNA downstream 143601 42872653 ~ 42873760 (-) True G58404
TU78709 lncRNA downstream 404500 42612095 ~ 42612861 (-) True G58394
TU78771 lncRNA upstream 63481 43092558 ~ 43092913 (-) True G58430
TU78829 lncRNA upstream 107167 43136244 ~ 43139283 (-) True G58470
TU78837 lncRNA upstream 139479 43168556 ~ 43169692 (-) True G58476
TU78836 lncRNA upstream 141057 43170134 ~ 43171136 (-) True G58475
TU78851 lncRNA upstream 249715 43278792 ~ 43335618 (-) True G58490
XM_007247963.3 mRNA downstream 9127 42996976 ~ 43008234 (-) True LOC103044132
XM_007247964.3 mRNA downstream 24985 42979466 ~ 42992376 (-) True LOC103044416
XM_022670721.1 mRNA downstream 41583 42961276 ~ 42975778 (-) True LOC107197600
XM_007247965.2 mRNA downstream 57706 42953528 ~ 42959655 (-) True LOC103044736
XM_007247959.3 mRNA downstream 154521 42848819 ~ 42862840 (-) True qars
XM_007247995.2 mRNA upstream 1254 43030331 ~ 43039986 (-) True LOC103028227
XM_015605513.2 mRNA upstream 34210 43063287 ~ 43087871 (-) False map3k12
XM_007247971.3 mRNA upstream 34210 43063287 ~ 43087871 (-) True map3k12
XM_007247976.3 mRNA upstream 123883 43152960 ~ 43161328 (-) True LOC103021400
XM_022670931.1 mRNA upstream 132158 43161235 ~ 43162382 (-) True LOC111192716
TU78238 other downstream 1618883 41396086 ~ 41398478 (-) True G58022
trnaw-cca_41 other downstream 2411261 40606029 ~ 40606100 (-) True trnaw-cca_41
TU77868 other downstream 2838295 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 2898266 40117789 ~ 40119095 (-) True G57727
TU77625 other downstream 3454470 39560460 ~ 39562891 (-) False LOC103030299
TU78780 other upstream 73793 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 653247 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 1338823 44367900 ~ 44368368 (-) True G58649
TU79103 other upstream 1445082 44474159 ~ 44477666 (-) True G58678
TU79140 other upstream 1591230 44620307 ~ 44622074 (-) False snrnp200

Expression Profile