RNA id: XM_015605510.2


Basic Information

Item Value
RNA id XM_015605510.2
length 2706
RNA type mRNA
GC content 0.49
exon number 9
gene id lmx1b
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43458359 ~ 43539305 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCAGGCTTAGGGCTTCGTGAACGCGGCGGATCTCAATGGCACACTCATTTAAACGCTTACAGCCGTGACATCTCAGTCGCACTGTTTTGGATTTTACTCGTTTGTTGCTGTTTTGGTGCGCGAGGCCGCTCGAGTTTCTGCGTTCAGAGAGGGAGGATCCTTCTGTGCACTTCAGGACAGCGGCCCGGATACAACCAAACTTCTGTGCGGTGCAAAGTAGAAAAACACTGTCCAGCCGCGCGTACTCCTCATTAGCAGGTCCTGAGTCCCTGCAGCGGCGCCTCTGCGTGGGGAAAGGCTCGCGGTGTTCAGACATGCTGGACGGAATCAAAATCGAAGACCATCCGCTGCGGACAGGCCAGGCTACTCTCGGAGTCATGCTGGGGCCGGAgtgccatcatcatcatcaccaggCGGTATGCGAGGGCTGCCAACGGCCCATATCTGACCGCTTCCTCATGCGCGTGAACGAGGCCTCGTGGCACGAGGAGTGTCTTCAGTGCGCTGTGTGTCAGCAGCCGCTCACCACCAGCTGCTACCTGCGCGAGCGAAAACTCTACTGCAAGCACGACTACCAACAGTTATTTGCCACCAAATGCAGCGGATGTCTGGAGAAGATCGCGCCCACGGAGTTTGTGATGCGAGCGTTAGAGTGTGTGTACCACCTGaactgcttctgctgctgcgtGTGTGACCGGCAGCTGCGTAAAGGAGACGAGTTTGTTCTGAAGGACGGACAGCTGCTCTGTAAGAGTGACTACGAGAAGGAGAAAGACCTGCTCGGCTCCGTCAGCCCAGACGACTCCGAGTCAGAGAAGAGCGAGGACGAGGAGCTGGATATCAAGCCGGAGAAATGCTCCGGAGGCCCGGGCAAGGGGGACGACAGTAAGGACCCGAGGAGACCCAAGCGTCCCCGCACCATCCTCACCACGCAGCAGAGACGTGCCTTCAAGGCCTCCTTCGAGGTGTCTTCTAAACCCTGCCGGAAGGTAAGAGAGACCCTGGCGGCTGAGACAGGCCTGAGCGTGCGTGTGGTTCAAGTGTGGTTTCAGAACCAGAGAGCTAAGATGAAGAAGTTGGCGCgaagacagcagcagcaacaggagCAACAGAACTCCCAAAGGCTGGGGCAAGAGGTGATGTCCAACCGGATGGAGAGCATGATGAGCTCCTACACACCGCTGGCCCCTGCACAGCAGCAGATGGTGGCCATGGAGAACGGCTACACGGCGGACCCCTTCCAGCAGGGCCTCACCCCTCCTCAGATGCCCGGCGACCACATGAACCCATATGGAAACGACTCCATATTCCACGATATCGACAGCGACACCTCCTTGACCAGCCTCAGCGACTGTTTCTTGGCCTCTTCTGAAGCGGGCTCCCTGCAGGCGCGCGTGGGAAACCCCATCGACCGACTCTACTCCATGCAGAGCTCTTATTTTGCCTCATGAAATCCAACGTGGACAAGGACCAGCAAGAGGAGTGGGCTCACAGCAGCTCACTGCTCCTTTCTGTAAAATGCCTCAGAAACAAGATTTCCCAGCCAAGCTTACGAAAAAAACCCTCCTCACAGACAAAAGGGGAAACATGGGCTCAAATGATACAAACGCAAAGAACTCGAAGACGAGGAGTCCCCTGTTTCTCAGTAGTGAAAAATGCAGCTCAGGACAGCCAGTTTTCTGAAGCTGACAAGACTTTTTCTAGGTAACTGTTGATCGTTTGTACATGACTTTCACCGTAGTAGCACTCAACTCTTCGATGTCCACtcgtggggggaaaaaaaaaaaagagtattgaCATACAGTTGAAAGCCACTGAAGCCACAAACCTCAGTCCACAGCATCCTGCCTAGGAAGGCTGAAGATCAAGACACAGATCTCACAATGCATGAGCCCATACTCTTCGTGAACATGACATCGAGAAAGAAAACCATTAGAAAatagatgagaaaaaaaaaaaaacttgtgttgTTGAGACGTTTAAATGTGATGTTTGGACTCATAAATTCTCTTTTCATTATGTTCAGCATTGCCTTTTTATCACTTTAATAGGTTTAGCTTTGAAAGTGGATTTAGAAATGGTAGAAGGATGAATGTGTAGTGTATTAGctctgtatgagtgtgtgtgagagagaaagagagagaaagagagagagagtgtgtgtgtacgtgtgtatgGCAGAGAGTTTGTGTAcaagtgtatgtatgtgtatagacatgagtaaagctgtatgtgtaTCTCTCTGGGCGTGCGTgcgtatgtatgtgtatgtgtatgtgtatgtgtgtgtgtgtgtgcgtgtgcttCAGTTCGTCCTAGTTTGAAAGATGGTGAGAGATGATGGACTGTGTGAGCTCTATACttgtgtaaatatatgtttcCTGAACAAATCAGTTGTGCATGTTCAAAATGGAGATCattctatttatttaactacAACATGCTCTTGAAGGTacttaaaaaactgaaaagcttTATTTAAAGAGGAGAAAACCATGTCAGGCAGTTAAAAGCATCGTCATCCTTCACCCATCTATCTTTTAATTATGAGATATGACCCTTTCCTCAGCTATGATGTACATCAGCAAAAGTGTGCTATTTATTTGTTACAGGCCCTAAACATTGTCGAAAATGCATTTCCAAATGTGAAGACTGCTAAATTACCAAAGTTTGTTGGTACTATGAATAAACTCCATTTCTCCTGA

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09371 LMX1; LIM homeobox transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78874 lncRNA downstream 11635 43446516 ~ 43446724 (-) True G58510
TU78873 lncRNA downstream 63245 43374336 ~ 43395114 (-) True G58509
TU78851 lncRNA downstream 122741 43278792 ~ 43335618 (-) True G58490
TU78836 lncRNA downstream 287223 43170134 ~ 43171136 (-) True G58475
TU78837 lncRNA downstream 288667 43168556 ~ 43169692 (-) True G58476
TU78901 lncRNA upstream 124842 43660778 ~ 43664015 (-) True G58530
TU78916 lncRNA upstream 248779 43784715 ~ 43784926 (-) True G58544
TU78918 lncRNA upstream 263900 43799836 ~ 43800041 (-) True G58546
TU78921 lncRNA upstream 292297 43828233 ~ 43828440 (-) True G58549
TU78956 lncRNA upstream 446816 43982752 ~ 43983922 (-) True G58568
XM_007247978.3 mRNA downstream 91898 43345499 ~ 43366461 (-) True zbtb34
XM_022670726.1 mRNA downstream 117979 43187260 ~ 43340380 (-) True ralgps1
XM_022670725.1 mRNA downstream 117986 43187260 ~ 43340373 (-) False ralgps1
XM_022670931.1 mRNA downstream 295977 43161235 ~ 43162382 (-) True LOC111192716
XM_007247976.3 mRNA downstream 297031 43152960 ~ 43161328 (-) True LOC103021400
XM_022670731.1 mRNA upstream 27796 43563732 ~ 43637921 (-) False LOC103023596
XM_022670730.1 mRNA upstream 27797 43563733 ~ 43638989 (-) False LOC103023596
XM_022670728.1 mRNA upstream 27797 43563733 ~ 43637921 (-) True LOC103023596
XM_022670729.1 mRNA upstream 27797 43563733 ~ 43637088 (-) False LOC103023596
XM_022670739.1 mRNA upstream 383293 43919229 ~ 44038635 (-) False LOC103029164
TU78780 other downstream 350736 43102870 ~ 43107623 (-) True G58435
TU78238 other downstream 2059881 41396086 ~ 41398478 (-) True G58022
trnaw-cca_41 other downstream 2852259 40606029 ~ 40606100 (-) True trnaw-cca_41
TU77868 other downstream 3279293 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 3339264 40117789 ~ 40119095 (-) True G57727
TU78909 other upstream 146388 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 831964 44367900 ~ 44368368 (-) True G58649
TU79103 other upstream 938223 44474159 ~ 44477666 (-) True G58678
TU79140 other upstream 1084371 44620307 ~ 44622074 (-) False snrnp200
TU79350 other upstream 1525173 45061109 ~ 45061674 (-) True G58868

Expression Profile