RNA id: XM_022670404.1


Basic Information

Item Value
RNA id XM_022670404.1
length 2606
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC103040153
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26537052 ~ 26551570 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaatttACCTAAAAGGAACTTTTGGCCGTGAGTTCAGCTCGCCTTCCCCCCAATATCTGCCTGCGCGAGGCTGAGTGGATGGCGCAGCTGACGTCACACCGAGGGGATTCAGAAACTTGCCCTGCGGACGGACGTCAGTGGAAGAAAAGCCACGATTGAAACAGCTCCAATTAGCGCCAGCTCTCAGGACGACACTGCACTGTTACTGCACTGTACTGCACTGGGCCCGAATGGAGCATGCAGGACACGCGCCGCCGCCACGATCCCAGCGTCTCACTAGCGAGTTTCGGCAGCGCGGGCGCGGAACGCCAGTTGTGAGCGCGTAAACAAGCCCACCCAGCATGAAGCGCAAGAGCGAGCGACGACCCGAGTCCAGAAAACGGCTCTGCGCTGCGAAGAGGGAGGAGGCGGAGCCGAGGACTGATATTTACATCCTTATAACAGatcagctCTATTTTGCTGTCCTCAAGCAGAAGATCCGGAGCACACACGAGAGGCACTGCTTCTGTATAGATGAAGAGCTCTCGTATGAAAACTTTTACGCGGACTTTGGCCCACTCAACCTGGCCATGTTTTATCGCTTCTGTTGCAAGCTCAACAAAAAGTTGAAGACTTTTTCCCTTGCCAAAAAGAAAATTGTCTTCTTCACGTGTGGTGACAAAAAGAAACAAGCAAATGCTGCTTATTTAATAGGATCGTATGCGgtAATGCATCTCCAGAAAACACCAGAGGAAGCTTATAGCCTGCTAATGTCCAGAAACACCCATTATATTCCTTTCCGAGATGCATCGTTTGGAACTTCCATGTACCATCTGAACATCCTTGATTGTTTACGTGCTGTACACAAGGCTCTGCATTTTGGATGGCTTGATTTCTCCAACTTTGACGTGGGGGAATATGAGCATTATGAGAGAGCAGAAAATGGAGATTTCAACTGGATCATTCCTGGGAAGTTCTTGGCCTTTAGTGGTCCACACCCAAAGAGCAAAATTGAGAACGGTTACCCACTCCACGCTCCTGAGGCATACTTTCCATACTTCAGGAAGCACAATGTAACCACCATCATACGtctcaacaaaaaaatgtacGATGCCAAACGCTTCACAGATGTGGGGTTTGACCACCATGACTTGTTCTTTGTTGATGGGAGCACACCTAACGATGCCATCGTTACCAAGTTCTTGAACATCTGTGAGAATGTTGATGGTGCCATAGCCGTCCACTGTAAAgCCGGTCTGGGACGCACTGGAACGCTGATCGCCTGCTACATGATGAAACACTTCAGACTGACTGCAGCTGAGGCCATTGGCTGGATCAGGATCTGCAGACCGGgttctgtgattggtccacagCAGAACTTCATTGAAGATAAGCAGTCCAGCCTGTGGGCAGAAGGTGATCTACATCGTCAGAAACTAAATGAGCTGGAAAATGGTTGTAGCAAAACAGCAGTGACAGGAATACTGTCAGGAGTAGATGACATCTCTATCAATGGGACAAACAAGAACATTTCACCCAGGAAGACCAACATGTATGATGACgttgatgaggaggaggaggagcagcagcACAGTGGCCTCACACAAGGTGACAAACTGAGGGCACTGAAGAGTAAAAGACAATCAAGAGCATCCACAGGGTCTTTATCGTTAGAGGAGAATAAAATTCACACCAGGTCTACATCAAACTCTTTAagAATTATTCTACAATCCAGTGCACAACGCTGTAAATCTGCAAAATCTCAAAATCCTTCAGATAATGTGGATGTTCGGAAAAGAACCAGAACCTCACTTGGATCCAACAGAGCTAACAGACTGGCAAGGTCTTTAGGCAGCTTGCATGTAATGACCAGTGAAAAGAACCGCGAGTTCTCTGAAGTCAGTCCAGACCTTCTGGCTGCAGATAGCCTGAGCAACCAGACACATTTAAAGTGCACAAGCCCTTTCAGCAGTGAGCAGCTTCCATTTCCTCCTCAACACAGCAGTCTCCTCAACTTACCATGCCATCCCTAAAGCTAGAGCACCTCTACTCCGCTAAACTGTTTTTGAAGATTCAAGATACAGAAAGTAACATCTTCATAAAGTCTACAGGAGTTTGCTTATGGACTAAACCTGCCCGTGTCTGCAAAACAGAACCATATGGGATGAGAACGGATACATTAGGAAAGAAGTACTAATTTGGAAACAAAGGGAGCTTTGACATGCTAACATTTTATGTGAAGTAAAatcttttatttcagtgttcatAGCGAGAGATTTCAATGTATCCTAACAAGCGTTCAGTAACTTTCTATTTCTATTATATACCACTCTGTGGCCGACTAAACGGTGTAAACaaatgtgaaacttttttttttgtctttcttttcaaGTTTACCTGTATTTGGCAGCTGAAGGCTGTATATACGCAACTGTTTGATACGTGTAAAAGAGCTGTTGTAAATTTTTACCTGTAAATAGTTTATAACCTTTTATTTCAAAGAGTTTGTCCATGTCTTACAATGCTTTTTATTTCCTtagcacatttatatatattatgtactaACCTTGAAAAGGATCTGAGTCATCACATGCTTTTAAAAGTAAATCCTTTGTTCTGTAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73510 lncRNA upstream 440688 26094352 ~ 26096365 (+) True G54529
TU73479 lncRNA upstream 721308 25815416 ~ 25815745 (+) True G54501
TU73477 lncRNA upstream 740076 25777094 ~ 25796977 (+) False G54499
TU73476 lncRNA upstream 758140 25777094 ~ 25778913 (+) True G54499
TU73466 lncRNA upstream 808456 25728383 ~ 25728597 (+) True G54489
TU73558 lncRNA downstream 90127 26641697 ~ 26643753 (+) True G54560
TU73628 lncRNA downstream 129061 26680631 ~ 26681078 (+) True G54611
TU73631 lncRNA downstream 129524 26681094 ~ 26681334 (+) True G54614
TU73706 lncRNA downstream 384360 26935930 ~ 26968187 (+) True G54673
TU73705 lncRNA downstream 384589 26936159 ~ 26968187 (+) False G54673
XM_007254057.3 mRNA upstream 2977 26530308 ~ 26534076 (+) False aaed1
XM_007254056.3 mRNA upstream 2977 26530310 ~ 26534076 (+) True aaed1
XM_007254047.3 mRNA upstream 885750 25642306 ~ 25651303 (+) True LOC103035969
XM_022670402.1 mRNA upstream 896200 25637459 ~ 25640853 (+) True LOC103021869
XM_007254048.3 mRNA upstream 903796 25625246 ~ 25633257 (+) True LOC103036292
XM_007254066.3 mRNA downstream 1727 26553297 ~ 26556972 (+) True znf367
XM_007254074.3 mRNA downstream 67319 26618889 ~ 26640868 (+) True LOC103044252
XM_007254075.3 mRNA downstream 67320 26618890 ~ 26640495 (+) False LOC103044252
XM_007247216.2 mRNA downstream 105230 26656800 ~ 26663942 (+) True LOC103026093
XM_007247214.3 mRNA downstream 120386 26671956 ~ 26680317 (+) True mrps27
trnaw-cca_39 other upstream 938305 25598677 ~ 25598748 (+) True trnaw-cca_39
trnaw-cca_38 other upstream 939138 25597844 ~ 25597915 (+) True trnaw-cca_38
trnaw-cca_37 other upstream 939969 25597013 ~ 25597084 (+) True trnaw-cca_37
trnaw-cca_36 other upstream 941303 25595679 ~ 25595750 (+) True trnaw-cca_36
trnaw-cca_35 other upstream 942136 25594846 ~ 25594917 (+) True trnaw-cca_35
TU73715 other downstream 411322 26962892 ~ 26973026 (+) True LOC103023473
TU73716 other downstream 468674 27020244 ~ 27022891 (+) True G54682
TU73727 other downstream 481265 27032835 ~ 27034938 (+) True G54690
TU73818 other downstream 659732 27211302 ~ 27218003 (+) False LOC103030972
TU73937 other downstream 1152202 27703772 ~ 27712578 (+) True G54841

Expression Profile