RNA id: XM_007260788.3


Basic Information

Item Value
RNA id XM_007260788.3
length 3452
RNA type mRNA
GC content 0.46
exon number 3
gene id fem1c
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9357767 ~ 9364491 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGGCAGAGAACTCCGCTTTAACAGAGGAGCTGAACGCAGATGGCAGCACACACAGCGTTATTAGCCTAGCTGACTGAATTCGGGAGTTAAATAACCGAGTGAAGTGTCGCGTCAGGGCGAGTTTGGACTGTTTGGAGTTTATAATCGGAGTCGGGGAGAAGCGCTGTGGCCCTGTGGGCTCGCTGAGCTCGATCAGGCTTCAGCTGGCCGAGCAGTTGGCAGCAGGAAGCAGGAGGAGAAGCGGGGGTGGAGAGCCGTGGCGAGAATCCAGCTGGaggatttctctctctctttttccatgATCTTCTGCGACACCTTTTAATGTAGGTAATGAACAGCGTTTCGACGGCGGTCGTGGATTTCTCCGTCTTCGTGTTGCCATGATTGTGGTAACGTTAGTCCAGTGAGGGAGGTGTGAAAACCGAGAAGCGGATTTAGGACCCGACGACAAAAAGgaagCAGCAACCAAATGCAATggatttaaaaacagcagtgttCAATGCAGCCAGAGATGGCAAGCTCAAGTTATTGCAGAAGCTTTTGGAGAATAAAACTGACCGTGAGGTTACGAAGCTGATGGCTGAAAAGACCAATGGAGCTACACCACTGCTGATGGCTTCTCGGTATGGGCACCTTGATTTGGTCGAATACCTTCTGGAATGCTGCTGTGCACCTGTTGAGGTGGGAGGCTCTGTCAATTTTGATGGCGAGACGATTGAAGGAGCTCCTCCGCTGTGGGCCGCTTCAGCGGCTGGACATTTGAAAGTTGTGCAGTCTTTGCTGGGACACGGTGCCTCTGTGAACAATACTACACTTACAAACTCTACCCCTCTCAGAGCCGCCTGCTTTGATGGCCATCTCGATATTGTCAGGTACTTGGTGGAGCACAAAGCGAATTTGGAGGTGGCCAATCGACACGGCCATACATGCTTGATGATTTCCTGTTATAAAGGCCACAAGGAGATTGCTCAGTATCTGCTGGAAAAAGGCGCTGATGTTAACAGGAAAAGTGTGAAAGGTAACACCGCCTTACATGATTGTGCTGAATCCGGAAGCTTGGAGATCATGAAAATGCttctgaaatatggtgccacaATGGAAAAGGACGGTTACGGAATGACCCCGCTTCTCTCAGCCAGTGTGACTGGGCACACTAACATAGTAGATTTCCTCACGCAGCACCCTCAGACAAACAAAATTGAACGGATTAATGCGCTGGAGTTGCTAGGAGCTACGTTTGTTGACAAAAAGAGGGATCTTCTAGGTGctctaaaatactggaaaagaGCCATGGACATGCGATACAGCGACGTCAGCAACATCTTAGTAAAAGAAGAACCTAAGGAATTAATAATGGCGTATGATTATGCCAAGGAGGTTAGTACCATTGAGGAGCTGGACAGCTTAATTTCGGATCCCGATGAGATGAGAATGCAGGCTCTTCTTATTAGAGAACGTATCCTCGGCCCCTCACATCCAGACACGTCGTACTACATTCGCTACAGAGGAGCAGTTTACGCAGATTCAGGGAATTTTGAGAAATGCATCAACTTATGGAAGTATGCTCTGGACATGCAGCAGAACAACTTGGACCCCCTCAGTCCCATGACAGCGAGCAGCCTGCTCTCATTTGCTGAGCTCTTCTCCTTCATGCTTCAAGACAGAGCAAAAGGCCTGCTGGGAACGTCCGTCTCTTTCGATGACCTCATGGGTATCCTCAGCAAGAGCGTGCTGGAGATTGAGCGAGCTATGAAACAGCCCCACCCAGGCCCGGACCCCACTCAACTTAGCAAAGCACTTTCCATCATCCTGCACCTTATCTGCCTGCTGGAAAAAGTTCCCTGTACTGTGGAACAGGATCACTTCAAGAAAGAAACCATCTATAAGTTCCTCAAGTTGCACCCATGTGGTAAGAATGGTTTCAGCCCCCTGCACCTTGCCGTGGATAGGAATACTACATGCGTGGGGCGATACCCGGTTTGTAAGTTCCCCTCTTTCCAGGTGACCTCTATTCTTTTGGAGTGCGGTGCTGATGTGAACTGCCGAGACGAGGATAACAACAGTCCTCTGCATGTAGCCGCCTCCAACAACCACCCAGACATCATGAACCTGTTGATTGCCTGCGGAACGCACTTTGACAGCACCAACTCCTTCAAACAGACTGCCTGTGACTTGCTTGATGAGAAGGAGATGGCCAAGAACCTGATCCAGCCTATTAATCACACCACACTACAGTGTTTGGCTGCAAGGGCCATTATAAAGTACGATCTCACATATAGGGGAAATATCCCAGAGAAGCTGGAGGCCTTTGTGCTGCTACACAGATAATGACTGAGAGGAACTGAAGCGTTTGGTGAAAAACGTCTTGGAGTCTAAAACACGTTTTAAGTACCTCCATGCTCCTCATGTGCTGTTTGTACAGAATAAGAAGTCTAGCACAGACGTTGATCATAGATTGATTCTATTCTGTGGGCATGCCTAATATTTTTAACAGATTCTAACCCTCAGATGCTTATTTCTTGCTGTTTGTCAACATCTTTTGCATTTCTGCCTGATCCCCCTGCTTTGTATTTTCCCCCTCAATGCAAAGGTGGTGGGACCTGGCTGGTTTGATCTTCATTTTCCTGCTGTTATCTGGACACAGTACTGTTCTAATACTGCTGTTTTTACAAATTCATGGTTATGCTCTCATTGCATATTTTTTGTCGAGTGGAATGGAATGCACTCATTACTCCCTTCAAGCATAAAGAAGCTTTATGATGTGGTTAATGGTTGCGAATACCATAAGTGCTTTATTTCTCCTATGCACAGCCTATGATCTTGCGACTGTTCTGTGTTACTGGACTGTGCCACTGTTTTGTAACTGCCTGTTTTATTTACATCTGTCATTTTTTCCCCCTCATCCTCAATCTTCCTTAACTTGAAATGCAACTCAGTAAGTAAATCTGCAGCGAGGAAGCAATTGAGGTTTTCTTGAGTAATCAAGTTTTCAGCGATAAAGCCTGGACATTTTTCAAAGCTCATTTGCGAGGACCTTTGAGCCTCATGGTTTTAAGGCAAGCTATAAAATTGAGACAAAGGTTGGTTCCATCTTCTTAATGCACAGCATGTAGTTAAGTTATTGTAGTGCCTGTGTCTAATCAAGGCCGGTATCATCCACAGATCTGCTCTACTGGGACTTCTAACTCCTTTTGATGACACATTTTGTAGGAAGAGGATGTACCTTTAGTGAAGTTCTTGCACATGTTTTTACTCCAGCTACAGTTGTGCATTTTGAAAATAAGGGCTTTTCATACTTAAGAGCACATTTCACAAGCAAAAGAAACAAATGTACATTACTAGCTACCAGAGAAATTGCACTTTATTGCAGTGGCGTTTGAAAATTCCTTTTACAATGGCTTGTCAATGTCCTCAGAGCATATTTAACAATAAACCTCTGTTGCACTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68622 lncRNA upstream 33604 9309260 ~ 9324163 (+) True G50841
TU68599 lncRNA upstream 103641 9253173 ~ 9254126 (+) True G50822
TU68595 lncRNA upstream 153550 9204016 ~ 9204217 (+) True G50818
XR_002650140.1 lncRNA upstream 351121 9004992 ~ 9006646 (+) True LOC107197475
TU68536 lncRNA upstream 411395 8945273 ~ 8946372 (+) True G50770
TU68702 lncRNA downstream 250037 9614528 ~ 9622057 (+) True G50886
TU68703 lncRNA downstream 250112 9614603 ~ 9617381 (+) True G50887
TU68721 lncRNA downstream 356854 9721345 ~ 9728225 (+) False G50901
TU68719 lncRNA downstream 362047 9726538 ~ 9727985 (+) False G50901
TU68720 lncRNA downstream 362047 9726538 ~ 9733234 (+) True G50901
XM_007260806.3 mRNA upstream 2903 9353073 ~ 9354864 (+) True catsper3
XM_007260786.3 mRNA upstream 6089 9345638 ~ 9351678 (+) True tmed7
XM_007260785.2 mRNA upstream 22425 9326700 ~ 9335342 (+) True cdo1
XM_022670979.1 mRNA upstream 154638 9085038 ~ 9203129 (+) True sema6a
XM_022671109.1 mRNA upstream 362015 8976218 ~ 8995752 (+) True hsd17b4
XM_007260790.3 mRNA downstream 14635 9379126 ~ 9385691 (+) True ccdc112
XM_007260791.2 mRNA downstream 14635 9379126 ~ 9385691 (+) False ccdc112
XM_022671110.1 mRNA downstream 14641 9379132 ~ 9385691 (+) False ccdc112
XM_022671112.1 mRNA downstream 14654 9379145 ~ 9385691 (+) False ccdc112
XM_022671111.1 mRNA downstream 16201 9380692 ~ 9385691 (+) False ccdc112
TU68335 other upstream 1013253 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 1079011 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 1136605 8207342 ~ 8221162 (+) True G50568
trnae-cuc other upstream 2373506 6984190 ~ 6984261 (+) True trnae-cuc
TU67633 other upstream 2981062 6371520 ~ 6376705 (+) True G50063
TU68705 other downstream 278883 9643374 ~ 9782721 (+) True G50889
XR_002650141.1 other downstream 759229 10123720 ~ 10130801 (+) False nfu1
TU69382 other downstream 2468190 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 3072914 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 3072915 12437406 ~ 12448516 (+) True znf692

Expression Profile