RNA id: XM_007260790.3


Basic Information

Item Value
RNA id XM_007260790.3
length 1988
RNA type mRNA
GC content 0.46
exon number 11
gene id ccdc112
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9379126 ~ 9385691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCTGCCCCCCTTAGCAACGGCAGTTCACAGCACACCAACACAGAGGCGCGCTCCCGTCTGACTCCTGTTCTTACTAGTAgCTATAGAGGTTATCTTCATCTGGGTGGGCGGTAGATGAAGTTTTAGCCCAGTAGGCTAACTTAATGGCTAATAAAGAGCAGCTAGCCACAGGTTTCTCTAATTCTCTAAGACAGAACAGCTTCTACATTAACTAACCTGGCTGTTCGGctctttattaagaaaaaagtgGCTGCAGACGAACCAGATATTTACCTCCTGTGATCTCAAATGTGAGatgctgacccaAGAAAAGCAGCTCTATTCACTTTCACTGGAAGAATATGTGATTTAAAAGTGGACATGAGACAAAACATATGTCTATCTGCCTTTTTAGTACAGTAAGAACACAAGAATATTATATCTACAACCCTGATAAAATGCACAGCTCAGAGGAAAGAATCGCAGCAGTAAAAACGGCTGAATTTCTCAGGAAAGCTGAACAACTGAGAAAACTAGCTgacaaatgtgaaaaagaaagaaagtggaaTAACTCCAGCAGAAAGAACGGCCTTAAAGATTGTTTCTGCAGCTTGGAGGAGCTTGACAGCAAACTTAACAGTGAGCTCAAAACTGAAAtAATAAGGGTGCAGCAGCAACTCCAAAAAATTAGAAACAGCGTCTACAGGTTCCAGGGGCAGCTGATAGATGTCAAACCTTCTCCTGATTTGATAGAAAGATTAAAGGATGTCATGAGTGAGATTGAAAGCTCTATCAACATTATGAAAGAAGAACAACATCAAAGATTTGAGGAGCTCTTAAAAGAGGAAAGAATTTGCTGGCAGGAGATGTATGCCTTTGAGAAGAAGATTGATGCATGGTCATTATCTGGCAAGAAGGACAGTGAGATACCTGCAGTAGCTTCCAAGGCAAGACAAAATAGGTGCATAgacaaaaaagggaaagaggAGCTTCCTACAGAGgtgacagctctggaaacattCCTGCAGCAGACTGGTGGGAAGCTGGGAGGTTGGGATCAATATGACCACCAGAGTTTCCTGCAAGTATGGACCAAGCACCATGGAAAACCCTCGTATAGGGCAGAGGTTAAGTTTTACTTACCAGGCAAGACTGAAGAGCACATAAGACTGCATGAGGAATGGTATCTGGAGCTCTGCCATCTccaggagaaaaagaaggagGCAATTCAGAAATGGAGAGCTGAAAAGCAGAGAGCAAGGGAAGCACGTCTGCAGGATCAGGAGGGTGAAGCAGAGAAGAAAGAGCgtgaagctgctgctgcagaggcCCAGAGCCTCAAACAAGAGGAGCAGCGCAAAGAGGCAGCTGCATGCTTGGAGGCCTGGAGAAACCAGCGCAAGCAGCAGGAGGAACAGCAGGAGGAGCAGAGGCTCAGAGAGGAGATCCTGCGGAGGAAGCAACTGAAAGAGGAGAGGCGGAGGCAGCTGGAGGTCAAGCTGACTGTAGAGGCTCACAGCagacagaagagagaagaggaggagctgCGGCTTCTGGAGAAGCAGGAGCAGGAGAGGACAGAGATGGAAGAGAGAAGGAGACTGGCTGCTGAAGGCATCAGACGTTTTCAAGATAGGGATCTACACAAGTTAGAGACAAAACTGCAggagaaacaggccaaagaggaGGAAGAGTCAGAGAGGCTGAAGAaacaagctaagctaaaggAGAAGGTCGAAAGTAACATAAACCGAGATCCTTCAAGACTCTGGAAACCAACCAAAGGATGGGAAGAACGCACCAAAGAGATCGGGCCAACAGGGGGCGGACCTGTATATCAGATGTTTCATAGGGCTGTTCCGGCCTGGAGACAGGACCTCTAAGCTTGTTTCCAGACTTGTTCTCAGATCCAGAAAGGCACAAGTCAAATTGTTTTATAAGTGTATGTCATGtgtgaattgaatgtccattttatttgctttaaacattaaacattaacttttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68622 lncRNA upstream 54963 9309260 ~ 9324163 (+) True G50841
TU68599 lncRNA upstream 125000 9253173 ~ 9254126 (+) True G50822
TU68595 lncRNA upstream 174909 9204016 ~ 9204217 (+) True G50818
XR_002650140.1 lncRNA upstream 372480 9004992 ~ 9006646 (+) True LOC107197475
TU68536 lncRNA upstream 432754 8945273 ~ 8946372 (+) True G50770
TU68702 lncRNA downstream 228837 9614528 ~ 9622057 (+) True G50886
TU68703 lncRNA downstream 228912 9614603 ~ 9617381 (+) True G50887
TU68721 lncRNA downstream 335654 9721345 ~ 9728225 (+) False G50901
TU68719 lncRNA downstream 340847 9726538 ~ 9727985 (+) False G50901
TU68720 lncRNA downstream 340847 9726538 ~ 9733234 (+) True G50901
XM_007260788.3 mRNA upstream 14635 9357767 ~ 9364491 (+) True fem1c
XM_007260806.3 mRNA upstream 24262 9353073 ~ 9354864 (+) True catsper3
XM_007260786.3 mRNA upstream 27448 9345638 ~ 9351678 (+) True tmed7
XM_007260785.2 mRNA upstream 43784 9326700 ~ 9335342 (+) True cdo1
XM_022670979.1 mRNA upstream 175997 9085038 ~ 9203129 (+) True sema6a
XM_022671113.1 mRNA downstream 422 9386113 ~ 9405334 (+) True pggt1b
XM_007260794.3 mRNA downstream 25840 9411531 ~ 9441528 (+) True trim36
XM_007260796.3 mRNA downstream 25840 9411531 ~ 9441528 (+) False trim36
XM_022671108.1 mRNA downstream 29188 9414879 ~ 9441528 (+) False trim36
XM_022671107.1 mRNA downstream 29188 9414879 ~ 9441528 (+) False trim36
TU68335 other upstream 1034612 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 1100370 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 1157964 8207342 ~ 8221162 (+) True G50568
trnae-cuc other upstream 2394865 6984190 ~ 6984261 (+) True trnae-cuc
TU67633 other upstream 3002421 6371520 ~ 6376705 (+) True G50063
TU68705 other downstream 257683 9643374 ~ 9782721 (+) True G50889
XR_002650141.1 other downstream 738029 10123720 ~ 10130801 (+) False nfu1
TU69382 other downstream 2446990 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 3051714 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 3051715 12437406 ~ 12448516 (+) True znf692

Expression Profile