RNA id: XM_015601208.2


Basic Information

Item Value
RNA id XM_015601208.2
length 5256
RNA type mRNA
GC content 0.45
exon number 1
gene id rbm15
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5523809 ~ 5529064 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taggttTGCTAGTGTGTGTTGAAGCTGTGGAGACAAGATGGCGAATGCAGTTGTTTTGCTGCGGGAATGATTCAGGGCGGATTTTCGTAGTTTTTTCGTTTAAATCTGCGTAACTAGGGTGTAGTTTATACAAGTTGTGAGTGTTTATTAGGCCAGGCGCAGGTTTAAAGTGCTCGACATGAAAGGGAAAGAGCGTTCCCCCGTGAAAAAGCGATCGAGGGCGCTGGATGATCTGCGAGACCGCGGAGGGAGCCACCCGAGCAGTAAGAAAATGGGGGTGATTTCCATGTCCGGAGGGAGCAACAACGGCAACAGTTCCTCCAAAAGCGAGGGAGGTTCAGCGAGAAGGAGCCTTCTAGGCGATAAAAGAGACAGTAGGGACTTTGACGGACATGTTTCCAGCCGCGCCGGGAACAGCTACACCAGCCCCAACTCGAAGAACCACAACTCGGGCCTGTCGCTGGAGGCAGTCGCCGCCGCCGCTGCTAGGGGCAACTCGCGGGCCGAGCCGCGGACTCCGCTCCCCGCCAACGACAGTGAGTACAAAACGCTGAAAATCAGCGAGCTAGGCTCACAATTAAGCGACGAGGAGATCGAGGACGGGCTTTTCCACGAATTCAAGAAATTCGGCGACGTAAGCGTGAAGATTAGCCGCGTAAACGACGAGAGAATCGCGTTTGTGAACTTTAGGAGGCCTGACGACGCCCGGGCCGCCAAGCACGCCCGCGGCCGCCTAGTGCTGTACGACCGCCCTCTGAAAATCGAGGCCGTGTACATGAACCGGAGGAGAAGCCGCAGCCCGGTGGACAAGGACCATTTCCCAGCAGTGGCTggccacagacatttacacaccCAGAGGCCTCTCTCCCCTACTGGGCTCGGCTACAGAGACTACAGGTTACAGCAGCTCGCTCTGGGCCGCCTtcctccaccccctccccctcctctacccagagagctggagagagagagggagtttgCCTTCTATGAAGCAAGAGCCGCCAGGCCTGCCTACATCGCTGagagggctgctgctgctgccgctgccttCAGAGAAGAGGACTTCATCTCTCCAGAGGACGACCAAAGAGCCAACAGAACTTTATTCCTGGGTAACTTGGACATTACAGTCACAGAAAGCGATTTGAGGAGGGCGTTTGATCGTTTTGGGACCATTACAGAGGTGGACATCAAGAGACCTACGCGTGGCCAGAACAGCACATATGGCTTTCTCAAGTTTGAGAATTTGGACATGGCCCACAGAGCTAAGATCAGCATGTCTGGAAAGGTGGTGGGCAGAAACGCCATAAAAATCGGCTATGGCAAGGCCACGCCAACCACACGCCTTTGGGTGGGTGGCCTAGGGCTTTGGGTTCCTCTAGCTGCTTTAGCGAGGGAGTTTGATCGCTTTGGCACCATTAGGACTATAGACTACAGAAAAGGTGACACGTGGGCGTACATCCAGTATGAAAGCTTGGATGCAGCTCAGGCAGCCTGCACTCACATGCGTGGATTTCCTCTGGGAGGTCCAGACAGAAGGCTGAGGGTGGACTTTGCAGACACTGAGCACAGATACCAGCAGCAGTTCTTGCAGCCGCTTCCTCTGCCACACTATGACCTCGTGGCGGAGTCTTTCGTCCACCGTGCCACTCCTGAAGCAATCAGGGTCAGAGAAAGGACTCCACCACCACTGCACTTTAGAGAACGGGAGCTGTATGCTGGGGCTGAGTGGCCAGCCCCTGCTATTCGTGAAAGAGTAAGGACTCCTGCTTTCGAACCTCTAGAGCACTTGGAGAGAGAACGCCGTCCAAGAGAGCCCTGGTCCCTGGAGCGTGAGCTGCCTGGCAGGGATGCTGCTCGCAAACGGCGCCTACTAGAGGATGGGCGCCACCTGGAATGCTCACCTGACAGCAGCAGCGAGTGGGCGGCACGACGCAGGAGACCACCTTCTCTGGAGGGCAGCCCTGGAGGCAGCAGCCGTGATGGGCGTTTAAGTGACTCAGAGCGTCCGCTTCGAGCAGAGCGGCCGTCCCCAGCCAGAGAACGCCGCAGCAGCCTGGACAGAGGACCTGCAGAAAAGCGTCTcaagagcagcagcagcctgtcggAGTCCGGCATCGGAACAAGCCCATCTGAGAGAAAGCGCAAAGCAGGAGAAGCAAGCAAAGGCCCCTCTAAAAGAGACAGAGCTGAGGGCAGCTCCAAAGGCAGCcagtcatctaagcaagattCAGGAGGAAAGCTGAGCATGGCCTGGAACGGCATGCTCCTCctgaaaaacagcaacttcCCAGCCAGCATGCACATCCTGGATGGTGACCTCAGCGTGGCCAGCAGTCTCCTCGTCGACGGCAGCACCGGAGGCAAGGTCACCCAGCTCCGCATCACCCAGCGCCTTCGCCTCGACCAGCCCAAGATGGATGAGGTGTCTCGCCGCATCAAAGTCGCAGGCCCGGGCGGGTATGCGGTTCTCCTGGCAGTTCCTGGCAGCTCCGAGGACACGTCGTCGTCATCCTCCTCCtcagcagatccagcagcaTCGACGCAGCGTCCCCTGCGAAACCTGGTCTCCTACCTGAAGCAAAAGCAGGCAGCCGGGGTCATCAGCCTACCTGTCGGGGGCAGTCGCGATAAGGACAACACGGGGGTACTGCATGCCTTTCCGCCCTGTGATTTCTCTCAGCAGTTCTTAGATTCCTCTGCGAAAGCTCTTGCCAAAACAGAAGAGGACTACCTGGTCATGATTATCGTCCGCGGAGCATCTTAACAATCAGAACACaccaaaaaaatgcattgtaaaaaaaaaaaaagaaaaaaaaaatgtgtctcaATTGTGCATGCTCTGTTAAGCCTGGTGCAGCAAATTCTAGTTTAAATGGGTTAAAGTGGGTTTGTGTCATCTGTTCTGCCAAATGCAATGCATGGGGATAAAACATGCCACACTCAGATAGCTGAATTGGTTTCCTTATCGCAATATTTGCTTATCATTACAAGTTATGAGTGTTTTGTCCAAACTAAATCATCTTTGTGCAAAGCTGTATTATAAGAGTGGTTGATAAAAAGGCAGACATAGAAttagaaaattaaatatttgccaGAATATTCTGTACTGTTATAAATCCTATACTTTTTTGCATAGAAGTTTAGACTACAAGCGGTTGCCCTTACAAGTAATAACACAGATGTTGATTGATTCATGTcgttatgttcatttttctgATTTAAAAGGTAAAGGTAATTGACTTCTTGTGACTTAATGCTTGAAACAATCACTTAACGAGTCAGTGATAAGGTGTAACATAGGCCTAGGTGTGTAGTTCTGTAGCCACCTACAGCAGTCAAGATCTTTCTCACGTAGAAACTGCATGTTTTCTCCATTGTCCTGTTTTGAAACTGTTGCACAGGTATTTCACGTTCAGAGTTCTGCATAATAATACAGGCTAATGTTGTATACAGTGATAGACACACAATGTACCTTAGTATTAAAATGTTCATCAGTGTGGAACTGGACAAAAAGAGCTACTGAGGCTACAAATTATTGATTTGTGTCAGATTTTATTATACCCAGGACCTCTTAAAACATGaatatttggtttaatttgAGCTACATCTTTTAATTTTACATGTTTATAAAAGGTACAGTAAGTTGAGTGCATATTAAGTTTATAATTTCAAAAGGTTAAAGATAAAGGTTTCTGCTGTGTGAAGCATATTGATCAGTGTGAGATATGGTATACTGTGTCTTTCTTTTCCTTCCTAAAGTCATTTAAATTTGTAGTAAAATCTAGTCATTTGAGACATTTCCCATTTTATAATTTGAGTTTTTCTCTTCTCCCACACTGAGTACACGATAATCTCTGTTAAAGATTGGTGATTTAATCAGTCCCTGGTTTCCATTAATTTCAGTGCTGTTGGtatcattaattatttaaaataattattattatgccaTCAAGTTTTTAGTAATTATAGCTTTGGAATGCACTCAAATATTTCACAAATCTGGtcttttcatttacatttttgtcaacACAGTTTTTGCCaaggttttgttgtttttcccaCATTAATGTAATTCAGGAAGATATGATGATCCTCTCAAATTTACATGTAGGTACAAAAATATGATGTACCTTAAGGTTCACAGTTACTTGATTATTGATGTGAtgtaattaataatgtaatCCTATCATAATATATCTTACCTATATTAACCACAGTTATCATTGTATTTCATACTTCAAACAGGGCTGCTCTGtgcttaaccttttttttttttttttttttagaatatttgcaaaatattttattttgattaattaaaattgtttaaatagtAAGATTATTTGgttacaacaaacaaacaatagaaTATCTCATTGCTGTTTCAAGACAAACATGTGTCTTCAAAGCTTTAACTCTACAGGAGAAGTGtatgtaattttggagcatttctattggtcatcCTTTCTTAAATTCTTTGGGCAAATTTTGACAATGTGAAAGACAGCTgctaaactaaaaatgaaaaaaagtggAGATACATGTTTGTTGGACATGGACTATCTGAAATTGGTAAAGCAGAATCTGTTAATAAACCGTTACttgaaataaatataagaaCTTTAATTTCTATTCACATGCAGCCCTGAATTAAAGTATGTTTCAAGTTTTCAGATTTCTCATCAGTTATATTACAGATATCATATTGACGCTCAgtgtgtttcatttattttcagactGGTAGCTTATAGCTTTAcgtcatgcatttttttttcctgttttttttcttctgttaagTTGATTTAAGTCAGTTGCAGTTTAAGGAAGGGTTCTGATTATTAACAAATTTGGAGATGTCGTGTGTTCTAgttctatttttcattttaagatcACACTAAATTTCATTATGAAACAGATTGGTTTGTGTATTGAGAATTTCAAAACTGTGTGTGAAAGATATACTGGATATACTGTACCTTCAGTAGACGTCTCACAGGATGAGATGATGTAAAAGGACCATTACGCCAGAGGACTTTCACCATGGCCGGAATCAGAAATGATTGTTTGAGCCCTTTGGATGCAGAGGGGCAAGAGCTTTCCGTTTAATGATTGTGTATTCTCGCTGagagagcagcttcacacttgtgtaattgtttttttgtgcttacAGTTCCCATATTTAAACGGAAAAATGACCCTCTTGCTTTGTGCTGTGTTTCCCTGATTTCTTGAaggagagcaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67354 lncRNA upstream 7950 5515561 ~ 5515859 (+) True G49855
TU67336 lncRNA upstream 81124 5442409 ~ 5442685 (+) True G49838
TU67335 lncRNA upstream 92172 5431429 ~ 5431637 (+) True G49837
TU67293 lncRNA upstream 258450 5227421 ~ 5265359 (+) True G49801
TU67281 lncRNA upstream 323092 5200490 ~ 5200717 (+) True G49792
TU67352 lncRNA downstream 742 5529806 ~ 5537630 (+) False LOC111192752
XR_002650135.1 lncRNA downstream 7951 5537015 ~ 5538913 (+) True LOC111192752
TU67368 lncRNA downstream 76939 5606003 ~ 5606600 (+) True G49868
TU67409 lncRNA downstream 136875 5665939 ~ 5666658 (+) True G49901
TU67435 lncRNA downstream 176635 5705699 ~ 5718260 (+) True G49915
XM_022671050.1 mRNA upstream 10138 5496669 ~ 5513671 (+) True alx3
XM_007232973.3 mRNA upstream 205361 5274656 ~ 5318448 (+) True kcnc4
XM_022671045.1 mRNA upstream 252804 5266678 ~ 5271005 (+) True LOC103043955
XM_022671046.1 mRNA upstream 265194 5213404 ~ 5258615 (+) True ahcyl1
XM_022671047.1 mRNA upstream 265194 5213404 ~ 5258615 (+) False ahcyl1
XM_007231938.2 mRNA downstream 90248 5619312 ~ 5627452 (+) False prok1
XM_022670974.1 mRNA downstream 104023 5633087 ~ 5655686 (+) True LOC103025805
XM_022671058.1 mRNA downstream 240952 5770016 ~ 5781687 (+) False LOC111192754
XM_022671057.1 mRNA downstream 240960 5770024 ~ 5781687 (+) False LOC111192754
XM_022671056.1 mRNA downstream 240960 5770024 ~ 5776674 (+) True LOC111192754
TU66895 other upstream 1277582 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2510179 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2510179 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2510179 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4712544 808155 ~ 811265 (+) True G48714
TU67370 other downstream 90095 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 247988 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 842456 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1455126 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 2678278 8207342 ~ 8221162 (+) True G50568

Expression Profile