RNA id: XM_015603140.2


Basic Information

Item Value
RNA id XM_015603140.2
length 1199
RNA type mRNA
GC content 0.54
exon number 3
gene id pym1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1760812 ~ 1764075 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctCCCTTTCCCGCCACGTGACCGGAAACCCCACATGTGGAAGATGGCGACTCCGTATGTAACGGATGAGTCTGgAAAGTACATTGCTGCTACACAGCGGCCGGACGGGACCTGGAGGAAACCTCGGCGGGTGAAGGAGGGATATGTGCCGCAGGAAGAAGTGCCGGTATACGAGAACAAATACGTGAAATTCTTCAAGAGCAAGCCGGACCTCCCCCCTGGCATGAATCCAGAGGATGCGGCGGCAGCTCGGCAGCAGCAGGCGCCCGGTGGCGGTGGTGGCGGGGAGAAGGAGAGCGAGACGGCCGGTCTGTCTAAAGCGGCCAAACGCAACATGAAGCGCAAGGAGAAGCGCaagcagcagcagagccagGGTCAGCAGGAGGAGTCTGAGGAGGTGGAGGCGCTGGGGAAAGATCTTGAGAAGGTGACGGTAGCTTCGGCGGAGAGGAACAGCACTGCTGCCCCTGCCCCTGCCTCAACACCTGCCTCAACACCTGCCTCAGCTCCTGCCAGAGCACCTGCCAGAGCACCTGCCTCAGCTCCTGCCACCTCCCCAGCCACAGCCCCTGCTGCTGCCGCCGATCTCTCCCCCGCAGCCGCCGCCGAAAAAGCCAAGAAGATCAAGAACCTGCGCAAGAAGCTGCGGCAGgtggaggagctgcagcagaAACTGGACTCGGGAGAGCTGCAGAACCCTTCCAAGGATCAGTTGGACAAACTGGGCCGGGCCCAGGCTTTACGAGCCGAGATTAAGCAGCTGGAGGCGGAACTGTGAAGAAAACTGCCTCGGAAAAAAAGATTCGAGATTAGAGGCGAGGAAGGAGAGGGTTGggtttttcagttttcatttttttcattttggtgtcgttttttttttttgttattgttgttttctTCGGAGGCTGTAGCATCCATAGACATCCTATGCATAGACGCCGCATACTCTGCCTCCTGGAGTGTCAGCGAGGCGgccatattggaggaggcaaCCCTGCGACCCCAGTGCATTAATTaacactgaggaaggtgtttaatacacctgtAATAATCACTCAACCAGTTTATACCTGATTTtcacacagtttgatttgttacagaCAGCAGAGATATAAGTAATGATTCAGGACgctgttacacattacaaatatgtgctTTCCTGCtaaaattctttgttttttgctctttaacaaagacag

Function

GO: NA

KEGG:

id description
K14294 WIBG, PYM; partner of Y14 and mago

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65971 lncRNA upstream 33530 1639979 ~ 1727282 (+) True G48822
TU65964 lncRNA upstream 149580 1606475 ~ 1611232 (+) True G48815
TU65962 lncRNA upstream 150516 1606475 ~ 1610296 (+) False G48815
TU65906 lncRNA upstream 254526 1491321 ~ 1506286 (+) True G48772
TU65890 lncRNA upstream 289470 1463023 ~ 1471342 (+) True G48771
TU66023 lncRNA downstream 39682 1803757 ~ 1904244 (+) True G48857
TU66036 lncRNA downstream 71243 1835318 ~ 1851766 (+) True G48868
TU66057 lncRNA downstream 125832 1889907 ~ 1934861 (+) True G48887
TU66065 lncRNA downstream 129843 1893918 ~ 1895755 (+) True G48891
TU66081 lncRNA downstream 152520 1916595 ~ 1952370 (+) True G48897
XM_022670987.1 mRNA upstream 299114 1415274 ~ 1461698 (+) True LOC103041629
XM_022670982.1 mRNA upstream 1283516 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 1491290 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 1629174 122069 ~ 131638 (+) True LOC111192720
XM_022670945.1 mRNA downstream 8844 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 235499 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 595847 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 701518 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 714516 2478591 ~ 2506196 (+) True klhl12
TU65829 other upstream 949547 808155 ~ 811265 (+) True G48714
TU66507 other downstream 1218771 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 1218849 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 1218849 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 2480453 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3855084 5619159 ~ 5627452 (+) True prok1

Expression Profile