RNA id: XM_015605303.2



Basic Information


Item Value
RNA id XM_015605303.2
length 3169
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC103031292
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26784220 ~ 26796027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TTGAAATCTCCAGCCGACGTGACTGGAAGTCGGAGTCGCGGCTGGGTCAGCTAGCTACTTTTCGCCTGAGTAGAGATGGTGTGGAGCTGCTCTACAGCGAAGAGCAGAGGACTGTCCGGATCTTTAGCTTTGTTTGATCGTATTTAGAAGCCGGTATCTTGCTTATTTGCCCATTTTGTGGTGTAGGAACCATCCAGAGCTCTGAGGAATACCGAACATCTAGCAAACACGAGAGGGCCCGGGCTCGGGAACATCCGCTCCTGTCATGGAAGGAGATGGGGGCAGCGAGTTCAGACAGTGGTGTCTCTCTCAGGTCAAAGGAGCCATTGACGATGATGTAACAGAAGcTGATATTATCTCTGCGGTGGAGTTCAATCATTCAGGAGAGCTTTTGGCCACTGGTGATCGAGGTGGCAGAATAGTCATCTTTCAGCAAGAGCAAGAGAGTAAAGCTCTGCCTCAGTCTCGAGGAGAATACAACGTCTACAGCACCTTCCAGAGTCACGAACCAGAGTTTGACTACCTGAAGAGTTTGGAGATCGAGGAGAAGATTAACAAGATACGTTGGCTCCCTCAGAAAAATGCTGCTCACTTTCTACTGTCCACAAATGATAAAACTATTAAGCTGTGGAAAATTAGTGAACGTGATAAAAGACCAGAGGGCTACAACCTAAAAGAGGAGGATGGGCGATACAAGGATCCTACATCTGTTACTACACTACGGGTTCCAGTGTTCCAGCCCATGGACCTAATGGTAGAGGCCAGTCCTCGGCGGGTCTATGCCAATGCACACACCTATCACATCAACTCGATTTCAGTCAACAGTGATAATGAGACCTACCTGTCTGCAGATGACCTGAGGATCAACCTGTGGCACCTTGACTTTACAGACCGTAGCTTCAACATTGTGGACATCAAACCTACGAACATGGAAGAGCTGACTGAAGTGATCACAGCCTCAGAGTTCCATCCTCTCCAGTGCAACACTTTTGTTTATGGCAGCAGCAAGGGCTCTGTGCGCCTGTGCGACATGAGGGCGGCTGCACTCTGTGATCGGCACTCGAAATTGTTTGAGGAGCCTGAGGATCCTAGTGCTCGTTCCTTCTTTTCCGAAATTATCTCCTCTGTCTCGGACGTCAAGTTTAGCCACAGTGGCCGCTACATGATGACCCGTGACTACCTGACGGTTAAGATCTGGGACCTCAACATGGAGAGCCGACCTGTGGAGACCTATCAGGTTCATGAGTATCTCAGGAGTAAGCTGTGTTCTCTCTATGAGAATGACTGCATCTTCGATAAGTTTGAGTGCTGCTGGAGCCAGGATGACAGTGAGGTGATGACAGGCTCCTATAACAACTTCTTCCGGATGTTTGGTCGTGACGGCCAGCCTGGGATGACCCTGGAGGCCTCATGGGAAAGCAGCTCACCTCGTTGCCCGCTGAGGCCCTGGAGAGTGTGTGCAGGGAGCAGGCGCAATGATGACGAAATCGGGGTGGACTGCCTGGACTTCAGCAGGAAGATTCTCCACACTAGCTGGCACCCTCAGGATGGCATCATTGCAATGGCGACCATTAATAACCTTTATATATTCCAGGAGAAACTGAACTAGGACTGATTTGGCTTAGTCTCTGGTTCTAGCTCCAGGAGTTCCGCCTATGTGGATATCATCAGATATCCATAACCGGTCAGAAGCTAGGACTGTTTACACATTTTGCAGTCAACTCACTGTCTTACCATTAACCCACTGTAGCACCTTGGAAAAAAtgcttgctttaaaaaaaaaaaaaagaaagaaagaaaaaaaaaaaaaactctgctaCAAGAAAACCCTCTATGTGCATTTGGTTGGTTGTGACCGTTAAATGGTTATAGTGTACAATTTGTTACTTGCCTAattcttttctttgctttttaatGCATCCCACCCTAGGTTTTCATCCAAAGACTTTTCtgcacttaacaaaaaaaactattgaaaGTGCCATGTTAGAATTATTTGATTTTCTTATCATATTATTCACACTCATCTACTTACAAGAGCTTCTTTcatgtgttttaatataaaataaaccaatttcCAGGAGCACAATACACACCTCAGCAGTGAAACACATCACAGGATTCATCATATAGCCTCCAGTTTCAGTTTAATAAACTCACAATGCCTCTTTGATTTAGTCCAAAGTTCGAAATCCATATTTGCAGTATGAGCCTTTTTGCGCCCACCAGTTAGCTCAGGCAAGAAGCAGCCCCTCCTCGGACTCTGAGTCCAGTACTTAGCACAAGTCTATAATAATGCAGTTATCTCTGTGTGGTCACTAAAGTGGCCGTTTCTAGCTTGTAATGCTGATAATGTCCTTGCTGGGCAAAACTAacagtggcattaagttatccaataCTGTACATTTCGTGACTGATATCAGTCTTTGTTTTTAAAGGGACAAAAAGAGCAGGATGTTTTTGTCTAGCCTTGTATTTGTGTGTACAGTTGTACATGTCTTACTTACAAATTTCCTATTATTTGGGTGTATTGtgaataattttatttgcaGCTTTTTTAACATGGTGGTTCCTATAAAGGTAAAGAGAGAAtgacagttatttttttaaggaaattaCACATTTGAAATGACTTTCTCAGGGTATTTCAATGTAGTCATATCACTGACAGAAAGCTATTGTTAGCAGGGTCTCTTCGTGGGTTAAGACTCTTCGGAAGTGAGCAGACTGAAACGAACAAGAATGGAGTTGGATTTTACTCGTACAATGAAATATAGGGCTACTTGCCATAAGTACTCAACAGTAATACTGTCCTGGGTTCCCTGAATAGTTGTAAAACTATAGTGTGaaataaaagttacttaagaAAGTTTAAGAACACTTGTTTTCCTATTCCAAACAGTTATACAGATATGGGGCCTTTACATATATGATGCTAATGATAACAGTACACAATGTTacctaattctttttttttttttttttttttttttaagaaacatttGCTCCACAGATGTTTTGAACAATAAACGGggcattaaaaatgtatatatgccATTCTGTGTTAATGTGTTGTGTCAAACAGGGTGATAAATATCTGGAATATGACTGCTGTGAAGGAGTTTGTAAAAACATTTTGGCCTTTGAATAAATCATCACATTAAAAGAA

Function


GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73631 lncRNA upstream 102886 26681094 ~ 26681334 (+) True G54614
TU73628 lncRNA upstream 103142 26680631 ~ 26681078 (+) True G54611
TU73558 lncRNA upstream 140467 26641697 ~ 26643753 (+) True G54560
TU73510 lncRNA upstream 687855 26094352 ~ 26096365 (+) True G54529
TU73479 lncRNA upstream 968475 25815416 ~ 25815745 (+) True G54501
TU73706 lncRNA downstream 139903 26935930 ~ 26968187 (+) True G54673
TU73705 lncRNA downstream 140132 26936159 ~ 26968187 (+) False G54673
TU73714 lncRNA downstream 149785 26945812 ~ 26946875 (+) True G54680
TU73717 lncRNA downstream 173336 26969363 ~ 26970882 (+) True G54683
TU73720 lncRNA downstream 223034 27019061 ~ 27020194 (+) True G54686
XM_022670414.1 mRNA upstream 23994 26713060 ~ 26760226 (+) True LOC103031601
XM_007247213.3 mRNA upstream 82611 26691485 ~ 26701609 (+) True LOC103025471
XM_007247214.3 mRNA upstream 103903 26671956 ~ 26680317 (+) True mrps27
XM_007247216.2 mRNA upstream 120278 26656800 ~ 26663942 (+) True LOC103026093
XM_007254074.3 mRNA upstream 143352 26618889 ~ 26640868 (+) True LOC103044252
XM_007247210.3 mRNA downstream 1284 26797311 ~ 26810688 (+) True LOC103024632
XM_007247209.3 mRNA downstream 23554 26819581 ~ 26861864 (+) True LOC103024323
XM_007247206.3 mRNA downstream 166872 26962899 ~ 26973012 (+) False LOC103023473
XM_015605274.2 mRNA downstream 166936 26962963 ~ 26973012 (+) False LOC103023473
XM_015605275.2 mRNA downstream 166938 26962965 ~ 26973012 (+) False LOC103023473
XR_002650058.1 other upstream 232650 26537052 ~ 26551570 (+) False LOC103040153
trnaw-cca_39 other upstream 1185472 25598677 ~ 25598748 (+) True trnaw-cca_39
trnaw-cca_38 other upstream 1186305 25597844 ~ 25597915 (+) True trnaw-cca_38
trnaw-cca_37 other upstream 1187136 25597013 ~ 25597084 (+) True trnaw-cca_37
trnaw-cca_36 other upstream 1188470 25595679 ~ 25595750 (+) True trnaw-cca_36
TU73715 other downstream 166865 26962892 ~ 26973026 (+) True LOC103023473
TU73716 other downstream 224217 27020244 ~ 27022891 (+) True G54682
TU73727 other downstream 236808 27032835 ~ 27034938 (+) True G54690
TU73818 other downstream 415275 27211302 ~ 27218003 (+) False LOC103030972
TU73937 other downstream 907745 27703772 ~ 27712578 (+) True G54841

Expression Profile