RNA id: XM_022670448.1


Basic Information

Item Value
RNA id XM_022670448.1
length 2943
RNA type mRNA
GC content 0.48
exon number 10
gene id znf131
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28272499 ~ 28283827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGGGATTGTGGGAGCTGTAGTCCGGAGCGGCCGCCCTTTTCGGGGAGCGACGAGGCAGAGCGCGGCGAGAGTGCACCGATCAGGAGAGCAGAAAATATCTGCGCACAGGTTCAGATCCTACACCAGcagGAAAAGGACTGAACCATGTCTGAAGTTGGTGACATTAGAGACCATGGGCACGAGTTTCCAGCCCACTATAAAGTCATGCTGGATAAGCTGAATGAGCAGAGACAGCTGGACCAGTTCACTGACATCACGCTAATCGTGGATGGTCATCAGTTCAGAGCCCATAAAGCGGTGCTGGCTGCCTGTAGCCAATTTTTCCACAAATTCTTCCAGGACTTCACTCAGGAACCCCTTGTGGAGATCGAGGGAGTGGGCAATACTGCTTTCCGCCACCTGATGGAGTTCACCTACACAGCCACGCTGGCAGTAAATGGGGAGGAGGAGGTGAACGATGTGTGGAGAGCAGCCGAGTATCTGCAGATGCAGGAGGCCATTAAAGCCTTAAATAACAGAATGAATGGCATCACCGTACTGGGCAGTTCTTCAGTCCTGGTCGAGCGGAGTAAACCGAAGAAAAGGAAAATTGCAGAAACGTCCAACGTCATCACAGAGACGCTTCCCTTGGCGGAGACGGAGACAGTGGAGATCGAGGTGGAGGTTGGAGATGAGGCTATTGAGGTTCAGGAGGCAGGGCTGGAGGAGGTGGTGGATGCCGGACGAGTAAATACAGACCCAACCGTTGAGTCCTCGGATGACTCTGCCCTGGCTCTGCTGGCAGATATTACCAGCAAGTACCAGCAGGGGGAGCAGACGGTGCACGTGGAAAAGGGCGATGAGGAGACAGTGGTTCTGCAGGAAGAGGCGGTGATGGCCACCAAAACCCTGGAGGGcatggaggtggtggaggtccAGATCTCCCAGCTAGACAACATGTTCCGCTGTGACAAGTGTGACCGCTGCTTTAAGCTGTTCTACCACCTGAAGCAGCACATGAAGACGCACACCGCGGGCGTGGAGAAACCCTTCATCTGTAAACACTGCGGCCGGCCGTACGCTCGGGAAGGAGCACTCAAACAGCACCTCAACACCTATCACTTCGACGCTGAGGAGCAGTCCCTCCGGCAGAAGAAAAAAGTGCACGTGTGTGCGTACTGTAACAAACAGTTTGACCACTTCGGACACTTTAAAGAGCATTTAAGGAAACACACAGGTGAAAAACCATTTGAATGTCCAGACTGTCATGAGCGCTTTGCCCGGAACAGCACACTAAAGTGCCACATGTCCGCCTGCCAGAATGGCTCAGGGGCCAAGAAAGGCAGAAAAAAGCTGTACGAGTGTCAGGTGTGTAGTGAAGTGTTTAACAGCTGGGAGCAGTTTAAGGACCACCTAGTGAttcacactggtgagaagccCAATCACTGCACCTTCTGTGATCAGTGGTTCATGGCTCCACGGGATCTGGGGGCTCACCTGAGGGACCACCATGGCTTCCAGGAGGAAGTGGTGATCGCTGACCCAGCTGCTGTTCTGACAGTGACCAGTATGGAGGAGAGTGAGGAGCACGTGGTGCTGCAGGGCGGGATGAGAGTGGAGCATGTGACTGTGGAGCCGGTGGACGTGGTGGCCGTGGAGGAGGCTGTGGTCGTGGAGGAACACCCTGCGCTCCAGACCTCAGTGGCAGAGGCAGAGGAGACGGTGCTGATAGAGGTGGAGGAGGATGGACTGAAGGAACAGACAGTGGAGGTTCATCTAGAGCAGGTGACGGAATTAGCGCAGCAAGAGGTCCGAACAGAAGAGGAGAAGATCCAGACGGGAGTTGTATGAGAAACACAGTGACGTTGAACTAGTGTGGAAAAGGACTGGCGGACAGATTATCccttatatttatttctgacacaGGACGAACTGTTTTCCCTCTCTCGTCTGACTGTGATGCTGCAACATTGTTACAATGGCTACTggtcatttttgtttttgctttgtttttcctCCAAATAATAGCAATGACAACCAtttagtttacttttttttttttaagcttttttagtcTTTCAATTCTCAGAAAGTGTAAGAGAGGACAACTGATTTCTGATCTGTTGAAATCTACAAATGGTCTGGTTTAGAGTAGCTCTTAGTAGAAAAAGGtcttatttttgtaaaatgagTTTTGTAAATATGTGCATCGATTATTTTAGTGTATGACTGTctgtaaatgtttaaagaaaCAGTTCTGCGAAAAATCACATTTACCAAGTTTCCCCTTACCCACAATGTAAtcaatcagccaagacatgtttggtcTCCAAATTTTACTGTTTTGATTTAACACAGGCAGGCTAATGTAGCTTATAGGGCTGTAATCGGTACGTATCTTGAAACAGGGGTTGCAATATATATTAAGATCACTTAAGCTGCCTTCAGGTGTTCATTAAGGTGGTCCAGATTTATAAATATCAGGTTCGcaattaaaaacagcaaaaatgccACTAGCTCGCTGAATGCTGGGGGATTGTTTCtgttttatagtatatatagtgtcCTAAAGCCATATGCACATTAGCCTAGTAGCTCCAGTTTAGAACTATATAACTGTCAACAGATGGGTTAAGACGAaaactttctgtttcttttttactgAACTGTTTCTTTAAGTTAAGATATATCTGTGgattgagtgtgagtgtgtaagtgtgagtgtgtgtgtgtgtgagagtgtgtaagaaAGAGAATGGATTGTCTTTTGCTCCAGTGCCTAATCTCCTGCAGCTGGACTTGGcccgtctctctctgtctctcagtggACATTCAGACAGCTCAGGAACCTGAATGTCCACGTCCTCATCAATTTTTCATGGTTTCAGATTGTTATTCATTTGTACAGAGCAATAAAATGCTGAATTAAATCTTTAAGAGCATGGCATGCCCTTTATAAACA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K24806 ZBTB35, ZNF131; zinc finger and BTB domain-containing protein 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74229 lncRNA upstream 10493 28258365 ~ 28262006 (+) False G55053
TU74230 lncRNA upstream 10493 28258365 ~ 28262006 (+) True G55053
TU74231 lncRNA upstream 10493 28258365 ~ 28262006 (+) False G55053
TU74232 lncRNA upstream 10493 28258365 ~ 28262006 (+) False G55053
TU74233 lncRNA upstream 10493 28258365 ~ 28262006 (+) False G55053
TU74243 lncRNA downstream 16042 28299869 ~ 28302082 (+) True G55061
TU74289 lncRNA downstream 95082 28378909 ~ 28379388 (+) True G55103
TU74306 lncRNA downstream 169686 28453513 ~ 28508501 (+) True G55114
TU74307 lncRNA downstream 187169 28470996 ~ 28482177 (+) True G55115
TU74303 lncRNA downstream 194626 28478453 ~ 28480038 (+) True G55111
XM_022670445.1 mRNA upstream 25014 28212697 ~ 28247485 (+) True ghr
XM_022670446.1 mRNA upstream 25014 28215891 ~ 28247485 (+) False ghr
XM_007247166.3 mRNA upstream 107897 28158310 ~ 28164602 (+) True fbxo4
XM_007247167.2 mRNA upstream 114940 28153462 ~ 28157559 (+) True c6h5orf51
XM_007247172.3 mRNA upstream 248896 28015206 ~ 28023603 (+) True rgs7bp
XM_007247162.2 mRNA downstream 1542 28285369 ~ 28299831 (+) True nim1k
XM_022670449.1 mRNA downstream 20501 28304328 ~ 28313589 (+) True LOC103037168
XM_007247161.3 mRNA downstream 36041 28319868 ~ 28322245 (+) True gadd45g
XM_022670451.1 mRNA downstream 153940 28437767 ~ 28443647 (+) True LOC107197569
XM_022670453.1 mRNA downstream 171105 28454932 ~ 28475661 (+) False kdm2b
TU74065 other upstream 412550 27837306 ~ 27859949 (+) False ipo11
TU73937 other upstream 559921 27703772 ~ 27712578 (+) True G54841
TU73818 other upstream 1054496 27211302 ~ 27218003 (+) False LOC103030972
TU73727 other upstream 1237561 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 1249608 27020244 ~ 27022891 (+) True G54682
TU74355 other downstream 362237 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 362237 28646064 ~ 28649113 (+) False asphd2
TU74460 other downstream 470203 28754030 ~ 28754817 (+) True G55218
TU74882 other downstream 2245035 30528862 ~ 30550061 (+) True G55532
TU74844 other downstream 2338099 30621926 ~ 30625046 (+) True G55502

Expression Profile