RNA id: XM_022670452.1


Basic Information

Item Value
RNA id XM_022670452.1
length 3184
RNA type mRNA
GC content 0.54
exon number 12
gene id kdm2b
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28454932 ~ 28475661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggCCAGCAGGCTGCTGTGCGCTCGAGCAGCTGCCTGCCTGCTGTCCGTTTGAGCGAGAGAACACGCCACAGTGAgagaaaggaggagaggagagagggagaaaacggagagaaagaggaggaaagagagaacagagagacacGGAAGAATAGGAGTAGAAcggagagtgagggagaggagGCCCGGGGAAGGATTACAGCCATGACAGAGGCGAGTTTGCGGGACTGGATATGAAATTGGGCAGCCATGGCCATGTCTCTGAGCGCGGACGACGAGGATTACGACTCGGATACAGGAGAGCAGcaACGGCCAGCGAACCGGCCTAAACCCAAGATGGCGGCTCCGGCCACCCCAGCCGCAGCTACGTCTTCAGCATCGTCCACCCCGGCGGCAGTAAAGCTGCCGTCCAATCGCAGCTCGTCAGGGGCACGGCGGCGGAGGACGCGGTGCAGGAAATGTGAAGCGTGTGTGCGGACGGAGTGTGGAGAATGTCACTTCTGTAAAGACATGAAGAAATTCGGGGGACCAGGACGCATGAAGCAGTCCTGCATAATGAGGCAATGTATTGCTCCCGTGTTGCCCcatacagcagtgtgtgtggtgtgtggagaggCAGGAAAGGAGGACACGCTGGATGATGAGGAGGAAAAGTTTAACGCCATGCTGATGGAGTGCTCCATCTGCAACGAAATCGTCCACCCTAACTGTCTGAAGGTGAAGGACGCAGCAGGAGTCGTTAATGACGAACTGCCCAACTGCTGGGAATGCCCCAAGTGCAACTACGCCGGCAAGACTGGGAAAGCCTGTAAGCAAAAACGTGGTCCAGGATTCAAGTACGCGTCCAACCTGCCGGGGTCACTGCTACGGGAACAGAAGGCCAGTCGTGACCCACGGGAGGAGGTGGACCCCGCTGCAGTCCGGAGGAAAAGCGAGAGAGACGAGACCCCCAGACTGACAGTTGATGACCTGTCCACCCGCCTGCCCCCCCTACTGACCCCCAGAGAGCTGCCTAGGCCACGGCCGGACATACCAAACTTCCtcaggaagaagaagaaactgTTCGATGATGACGAGGAGGAAGAAGCTAGTGCTAAAAAGAAGctGAAGAAACCATGGAAGTCAGAAGATCCCTTAACTCCTAAACTTGCACAGATGAAGACTGAGGAAGAGGAAACATCTGAGCAGGAAGAAGAGCGGGAGGAGGACAGTAAACCTCCTCGGCTTTCTGTTAAGAAAGAGACAGGTTTGGGAAGGAGGCAGCAGGAGGAGCAGGAGCGagaggatgaggaggaagatgaagatggaggagTGCGGAGGGCTCGTGAGCGAAGCCCCACTCTGAAGAGCCTCTCTGCATCGGTAGAGAGCGATGCGTCCCGCTGCAGCTCACCCAGAGCTGGACCCAGCAGTGAGGGCAGTGAGACCCAGGAGAGAGTGCCCAGGGCCCGGGCACGGAAGACCCGCCGCAGGCCACAAAGCCAGCAGCTCAGCGCTGAACTCAGCAAGCAGCTAAACCAGGAGATCCGCCGGACAGAACATTCACTCGCCAACGAGAACCAGCAGCCGCTCAAGAGTGAGCCAGAGGACAGCGAGAACGAGGAGCCCAAGAGAAACTTCCGAAACGGAACGATAGGGGGTGACCTTGGGGGAGACCGAACACACCTTCGGTCTAAcctgagagcgagagagatgaACGGGACGGCCTGGGAGCTTCGCCACTTCTACCCAGCTCAGATAACTCCGCTCGGCTTCAACCGCAGCGCCCCCATCCTGCGGCCGCCGCCCACCAGGTCCCCACCTAAGTGTGTGCAAATGGAGCGCCACGTCATCCGCCCGCCGCCCATCTGCCCTCCGCCTGATAGGCTGCCACTGGTTGATGGGAGAAGCCACATGCTGCAGAGAGAAGCCTGGTTGGCCGTCTTCAGCCACCTAAGCCAtcgtgagctgtgtgtgtgtatgagggtCTGCAGGACCTGGAATCGCTGGTGCTGTGATAAGCGTCTGTGGACTAAAATTGACCTTAGCCGCTGTAAGTCGATCACTCCACTGATGCTAAGTGGAATAATCCGCAGGCAGCCGATCACGCTGGACCTCAGCTGGACCAACATCTCCAAAAAGCAGCTCAGCTGGCTCATCAACAGACTACCTGGTTTGCGGGTGTTGCTTCTATCTGGTTGTTCGTGGGCAGCGGTCTCAGCTCTCTGTACCTCCTCCTGCCCGCTGCTCCGTACGCTTGACCTGCAGTGGGTGGAGGGCCTTAAGGACCCACAAATGAGGGACCTACTATCACCCCCTACAGACAACAGACCAGGTCAGATGGACACGCGCAGTAAACTGCGGAACGTTCTGGAACTGCGTCTGGCTGGTCTGGATGTTACAGACAGCTCTCTGCGGCTCATCATTAAGAACATGCCCCTACTGGCCCGGCTAGACCTTAGCTACTGCAACCACATCAACGACCAGTCCGTCAACCTGCTAACCGCAGCAGGAACAACAACCCGCGACTCGCTAACTGACATCAACCTGTCAGTGTGTAACCGGGTGACGGATCAGTCTCTGAGCTACTTTAAGCGCTGTGGGAGCATCTGCTGGATCGATCTGCGCTTCTGTAAGCAGGTTAGCCGGCAGGCCTGCGAGCGTTTCATCGCAGAGATGTCCGTCAGTGTCTCATTCGGACTGAAGGAGGACAAACTGCTGCAGAAACTCTGTTAACCCcgacacacacgctcacacacacggacacataCAGACAGAAGTACACAGTGAGATGCGTGTGTGAGGTGTACTCGCGTGGATTGGAGCTGGACTGGATTTACTGGAGCACTCAAACAGATCtgtggattttttctttttttttctttttcccacCATAATTTCCTCTGTTCTGATCGGATGAGCTGAGATGGACGGACACTAACcagcaaataaaaatactgaatgGAAAAATACTGTGTTTGGATGCTTTCACAGGTTTGGCTGTATGATACAGTATtggatgtgtttaaaaagtgaaaaataaattgTTACTGGCACATACATGTACAAACACACTCCAACACCAAGCGaaagcacattattattattaatattattattattactatgtgTTATTTCTGTTCAGTCCTGATGAGtctgtgggttttttttatataattgaatttttaaatatatttgtctgAATGGG

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74289 lncRNA upstream 75545 28378909 ~ 28379388 (+) True G55103
TU74243 lncRNA upstream 152851 28299869 ~ 28302082 (+) True G55061
TU74232 lncRNA upstream 192927 28258365 ~ 28262006 (+) False G55053
TU74303 lncRNA downstream 2792 28478453 ~ 28480038 (+) True G55111
TU74321 lncRNA downstream 8392 28484053 ~ 28485004 (+) True G55124
TU74329 lncRNA downstream 45594 28521255 ~ 28521515 (+) True G55132
TU74331 lncRNA downstream 46015 28521676 ~ 28522357 (+) True G55133
TU74333 lncRNA downstream 48276 28523937 ~ 28561232 (+) True G55134
XM_022670451.1 mRNA upstream 11286 28437767 ~ 28443647 (+) True LOC107197569
XM_007247161.3 mRNA upstream 132688 28319868 ~ 28322245 (+) True gadd45g
XM_022670449.1 mRNA upstream 141344 28304328 ~ 28313589 (+) True LOC103037168
XM_007247162.2 mRNA upstream 155102 28285369 ~ 28299831 (+) True nim1k
XM_022670448.1 mRNA upstream 171106 28272499 ~ 28283827 (+) True znf131
XM_007247149.3 mRNA downstream 17915 28493576 ~ 28501784 (+) True anapc5
XM_007247150.3 mRNA downstream 19292 28494953 ~ 28501784 (+) False anapc5
XM_007247151.3 mRNA downstream 27691 28503352 ~ 28506229 (+) True gpx8
XM_007247145.3 mRNA downstream 126409 28602070 ~ 28616445 (+) False LOC103031919
XM_022670466.1 mRNA downstream 128195 28603856 ~ 28616445 (+) True LOC103031919
TU74065 other upstream 594984 27837306 ~ 27859949 (+) False ipo11
TU73937 other upstream 742355 27703772 ~ 27712578 (+) True G54841
TU73818 other upstream 1236930 27211302 ~ 27218003 (+) False LOC103030972
TU73727 other upstream 1419995 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 1432042 27020244 ~ 27022891 (+) True G54682
TU74355 other downstream 170403 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 170403 28646064 ~ 28649113 (+) False asphd2
TU74460 other downstream 278369 28754030 ~ 28754817 (+) True G55218
TU74882 other downstream 2053201 30528862 ~ 30550061 (+) True G55532
TU74844 other downstream 2146265 30621926 ~ 30625046 (+) True G55502

Expression Profile