RNA id: XM_022670477.1


Basic Information

Item Value
RNA id XM_022670477.1
length 2176
RNA type mRNA
GC content 0.45
exon number 6
gene id rsph14
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 29935109 ~ 29940287 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatatgtgaTTTATATATACATCTGTATTTACACCATTTTACGCAGTTTACCAGTTTATTATAGTTCAATACGGTTATTTAAGGGTCTCCAGAGCAGCGGATGGCTGGTAGCCGAATTTCGGAGCAGCTGCCTCCGCTTATTGACCGGAATCAGTCGCCCCTGGCGTTTGGTCAGCGCGCCCTTCCGCGGCTAGCGGCGGAACTGCAAAACCCGGAGCTGACCGTCCGTCAGGGGGCGCTAGCGGCGCTGCGAGACCTCATTCACGACCCGGAGCGAGCTTATGAGACCATTTACCACGGTTGTTTGGAGAGGTTGAAGGTGTTGCTTAAAGACGAGGACAGCTCCATCAGGACAGCAACTACTGAGGTGCTTTATCTACTGACTGCACACAGCGTAGGCAGGGAGGCAATATTGAGGGAGGATGTGGTTGGCTGTCTCTCTGAGCTGCTGGACGAGCCTGTGGATGCCTGCCGCAGAAACACACACCTAGTGCTGAAGATGATGTCCGGATTTCCTGCAGGTGTGGCGTGTATGGTGTCTCTGGGTTTGGTGCCCCGGTTAGTTATGAAGGTCGCTGCAGAGACAGAGGACATTCGAGAGCTTGTCCTGTCCACTCTGGGCTCCTGCATGCGAGTGGACACTCAGGCCGCTCAGGCTGCTCTGGCCAGTGACGTAGTGACTGTGCTGAGGGAACAACTCACACACTCATCCACCAACATCCGCAGGGAGGCCACTGCAGCCATGATAGCCATCAGtGTCCCTCCGCAGGGGAAGGTAAAGGTGTGTGAAGAGGAGGTTTTACCTGTTTTGGTCCAGTTGCTAAGTGATGAAGACCTGGAGATCAAAGCCAATGCTGCTGGGACCATTATGAACACTGCAGTCATCACCAAGGGGAAGTTCCAGTCTCTGCAGGCCGGAGCTCTGGCCCCTCTGCTGCATTTGGTGGAGTGTGAGCACAGGGCAGTGTGTGCTAATGCTCTGAGGGCCCTCACCTGCCTGGCAGAGGTTCCCAGGGCCCGGGAACAGCTGCTCCAACACCTGCCCCTCCTCCAGACACGCCTGAACCATCCAGAGCCCATCATCCAGCGAGCTTCAGCCACAGCAATACAGGTCATCTCCTGGACCCCTTGACAGGCCAGCAATCCAATCAAACTTCTGAACAGTCTGAACCCACCTTGACTAATCTGTCATGAAAGTCATTCTGgaaggaaataaaatatattataataaaaataatacagattTGGGCACCCCTGTCAAATGATTCTCTGGGTGtaaatcagtaaaataaattctgTACCACGACATATATCAACACATTGTAAAGCATCATTTCAGGAATTTTCTATCTTTACATTCTTCACACATTTATTTCAAGGCAAATTGCTTTGCACACATATGAACAGCAGATGTCACTCTAAACAGATGAAATGCTCCAGTGAGGGTATGTGCTCAGTGCTCCCAAAACAATATGGAGAATTTTTAtacacatcatttttttataaatacatattctAATTTAGGCCTGCAATGTTGAATACATATTAgaatacacaatacacatcTTTTCAAATTCATAAGTTTTCCCACAGCACATGACCACATCAGCAACAGTCCATGATCAACAGgtacaaaatattatatatttttctcttttttatatacatcACATCTACCTTTATGGATAAATCAAGAATCTCTTTCTCCAGATTTATTGATTACTTGTCATGGATATATAATCTTATATAAACCTATATTTGATTTGCAAACCTTTAATATCCAATCTGTGTACATGACCAAGGCTCCCAAATTTAATCATATGTAGGTACTTATATAGCCTAAATTACTGAAACACTGTACAAGTTGAGAAACAGCCCCAAAGTAGAATGTTTCCACTTCTATATATGAAAGTGGATAAGGCGTTCTTGGTGTCATATGCAGCATTCATCTTCCCTTTAAACATGGGGAGTCAAGTTGATGCCAAGAAGCTTAATTTTgatctcatctgaccacatcaCATTTTCACAAGCCTTCTCTGGATCATTTGGGTGAGCCTTCTTCAGTTGGAGTGCAGGATCTTAATAccttattgtagtgttatacaAAATAGTTTTCTGAATGTGCTCCCAGctcccttgagatcattaaaaAAGCTCTGCCTTTTTTCCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74736 lncRNA downstream 695 29909794 ~ 29934414 (-) False LOC103046862
XR_002650066.1 lncRNA downstream 81591 29844882 ~ 29853518 (-) True LOC111192661
TU74743 lncRNA downstream 88001 29846706 ~ 29847108 (-) True G55434
TU74742 lncRNA downstream 90707 29843435 ~ 29844402 (-) True G55433
TU74683 lncRNA downstream 94379 29744028 ~ 29840730 (-) False kiaa1671
TU74788 lncRNA upstream 104580 30044452 ~ 30089255 (-) True G55466
TU74792 lncRNA upstream 107343 30047215 ~ 30049185 (-) True G55468
TU74807 lncRNA upstream 160906 30100778 ~ 30104106 (-) True G55479
TU74823 lncRNA upstream 210279 30150151 ~ 30215590 (-) True G55491
TU74904 lncRNA upstream 350062 30289934 ~ 30290947 (-) True G55550
XM_022670475.1 mRNA downstream 679 29896515 ~ 29934430 (-) False LOC103046862
XM_007247109.3 mRNA downstream 679 29896515 ~ 29934430 (-) False LOC103046862
XM_022670474.1 mRNA downstream 679 29896515 ~ 29934430 (-) True LOC103046862
XM_007247110.3 mRNA downstream 680 29896515 ~ 29934429 (-) False LOC103046862
XM_022670911.1 mRNA downstream 40059 29856741 ~ 29895050 (-) True LOC103022657
XM_007247112.3 mRNA upstream 6817 29946689 ~ 29950373 (-) True LOC103021710
XM_007247113.3 mRNA upstream 15815 29955687 ~ 29963322 (-) True bag4
XM_007247100.2 mRNA upstream 181064 30120936 ~ 30127928 (-) True pold2
XM_007247101.3 mRNA upstream 190516 30130388 ~ 30138774 (-) True sf3a1
XM_022670481.1 mRNA upstream 278799 30218671 ~ 30231674 (-) True LOC103027196
TU74381 other downstream 1334599 28598278 ~ 28600510 (-) False LOC103031600
TU74384 other downstream 1511154 28417733 ~ 28423955 (-) True LOC111192657
TU74195 other downstream 1777660 28153421 ~ 28157449 (-) True G55023
TU74086 other downstream 2204030 27728711 ~ 27731079 (-) True G54947
TU73985 other downstream 2461762 27469218 ~ 27473347 (-) True G54873
TU75652 other upstream 2841404 32781276 ~ 32802153 (-) False LOC103021360
XR_002650076.1 other upstream 3209202 33149074 ~ 33177650 (-) False LOC103023237
trnaa-agc_13 other upstream 3420497 33360369 ~ 33360441 (-) True trnaa-agc_13
TU76301 other upstream 5153679 35093551 ~ 35108393 (-) True LOC103038119
XR_002650079.1 other upstream 5345550 35285422 ~ 35293421 (-) False acaa2

Expression Profile