RNA id: XM_022670491.1


Basic Information

Item Value
RNA id XM_022670491.1
length 2169
RNA type mRNA
GC content 0.52
exon number 9
gene id slc15a4
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30847907 ~ 30939711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGGGATATTATGAACCCGTGTTTGTCGGCAGTGTGCCTGTGCCGCCGTGCCGCGCTGCTACGGTTTCTTTCGGTCTCTGGCAAACTCATACCTGCTATTTGTAAggaatttaaaaagtttaaggACTTAAAATATCTCCTAAAATGTCCAGTGACATGGCAGTCGACATTAACAGCAGTCTGGTGGCCGGCTAAAGCTATTAGCTCTTCTCAGCTGAGTGTCTTAAGGGATCTACTCCTACATATTAGACATCTTGCTTTCAACCTTCACAGAAGACACCAAAGACACTGAAGACACTGAAGGCACCTCTTGGATTGGGTTCTAGCAAGTGGCGTCTCTTTTAAGAGACCCTGACTCTTCCAACCATGGCAAACCGGGACATAAACGAGAACACCCCTCTTTTGGACAGCTCCCTGTCTCTCACCAGGTCAGAGTCCATCTTCAAAGGGAGAAGATTGGCATGTGCCGCCATCCTTCTGGCAGAGTCTCTGGAGCGAATGGCCTTCTACGGCATCACCTCTAACCTTGTGCTCTTCCTAAACAGCAGCCCCTTTTACTGGGAGGCCACCATGGCCAGTCAGGCCCCTCTGGTGTTCATGGGAGTCACGTACTTGATATCTCCGTTTGGAGGCTGGCTGGCTGACGCGTTCCTTGGCAAGTTCTTGACCATAGCTTTGAGTCTGGTTCTGTATTTGACAGGGATGCTGCTGTTCCCATTTGTGGCCAGTGAAAGCTCCAGGACTGGACTGTGCGGGGAGGAGATGGCGTTTCCTGTACAGCCAGTAGAGTGCTTCAATATGAGCGGGACTCTTCCCGCTAACATTACTTGCCTTCCCAGGAAACCATACTGCGGGAATATAGTCTACATTGGACTGGTGCTGGTGGCTTTGGGAGTTGGAGCAGTGAAGTCCAACATCACTCCCTTTGGAGCAGATCAGGTTAAGGATCGTGGTCCTGAAGCAACGCGACGCTTCTTCAACTGGTTTTACTGGTGCATTAACCTTGGGGCCATCATGTCTTTGGGGGTCATCGCCTACATCCAGCAAAATATGAACTTTTGGCTGGGTTACATCATCCCTGCCGTGTGCCTGGGTGTGTCCCTGCTGGTCTTCCTGCTGGGACGCACCGTCTTCATCACCAAACCTGCGGATGGCAGTGCCTTCACCGACATGTTTAAGATTGTGGGCTCGGCCTGCTGTGGGGGACCCAGCGAACCTCACCTGCTTAGGCCCAAACCCAGCCTGCTTGATGGTGCGAAGGTGACGTATGGAGGGAAATTCCCGGAGGAGAAAGTGGATGAAGTGAAATCTTTAATGAAGATCCTGCCCGTCTTTCTGGCCCTCATTCCATACTGGACTGTCTACTTTCAGATGCAGACCACGTATTACCTACAGAGTCTTCACCTGAGAATCCCTGGATCCGAAGCTAATGTTACAGACTCTCAAACGaTGCGGTTTAAGTTCCCAGCAGCCTGGCTGACGATGTTTGACGCTGTGCTGATCCTGATGCTGATCCCACTGAAGGATAAACTTGTGGACCCCATACTGAGGCGCAGGGGGCTGCTGCCCTCCTCTCTGAAGAGGATCGCCGTCGGCATGTTCTTCGTCATGTGCTCAGCTGTCGCTGCGGgtattCTGGAGACGAAGCGATTGGAGATAGTTAATTCTCCTCATGGGGTGATCAGTCAGGTTCTGGGGGGAGTGACGTATTACGCTGCTGATCTCCCCATATGGTGGCAGATTCCTCAGTACGTCCTCATCGGCATCAGCGAAATCTTCGCCAGCATTGCAGGTCTGGAGTTTGCGTACTCTGCGGCTCCCCGCTCCATGCAGAGCGCTATAATGggccttttcttcttcttctctggaATCGGTTCCTTTGTGGGATCTGGCCTGCTCGCCTTCGTCTCTGTTAAATTCATCGGCTGGATGTCCTCCCACAAAGACTTCGGCGAAACACGGCTGAAAATCTGTGACGGCCGCCTTCTTCCTGAGGGAAGTGCCAGCAATCTCTCCCCGAGAGCGAGTGTGTCGGAGTGATATATCTCCTTTGAGCGGACGTTCTTTACGGCCACGGCTGCAAAGCAGCTCGCTCGCTGGGAAGAAAACCCATCAACACGGGGAAAGCACGAGGGGTTcgagaaaagtgtgtgtgtttgtgtgtatgt

Function

GO:

id name namespace
GO:0006857 oligopeptide transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74972 lncRNA upstream 4562 30777915 ~ 30843345 (+) True G55606
TU74971 lncRNA upstream 86955 30759802 ~ 30760952 (+) True G55605
TU74955 lncRNA upstream 211709 30635584 ~ 30636198 (+) True G55591
TU74891 lncRNA upstream 246469 30598612 ~ 30601438 (+) True G55537
TU74887 lncRNA upstream 317633 30529865 ~ 30530274 (+) True G55533
TU75076 lncRNA downstream 537197 31468714 ~ 31469001 (+) True G55698
XR_002650069.1 lncRNA downstream 544160 31475677 ~ 31477328 (+) True LOC111192664
XR_002650070.1 lncRNA downstream 546054 31477571 ~ 31486156 (+) True LOC111192665
XR_002650072.1 lncRNA downstream 587573 31519090 ~ 31548693 (+) True LOC111192667
XR_002650115.1 lncRNA downstream 629818 31561335 ~ 31566754 (+) True LOC111192731
XM_022670485.1 mRNA upstream 97991 30659726 ~ 30749916 (+) True LOC103026612
XM_022670487.1 mRNA upstream 222525 30614316 ~ 30625382 (+) True LOC103026908
XM_022670914.1 mRNA upstream 498286 30340579 ~ 30349621 (+) True LOC103040742
XM_022670482.1 mRNA upstream 574786 30253550 ~ 30273121 (+) True LOC103040008
XM_022670912.1 mRNA upstream 645701 30176593 ~ 30202206 (+) True LOC103041750
XM_015604352.2 mRNA downstream 764101 31695618 ~ 31728020 (+) False golga1
XM_007229325.3 mRNA downstream 764102 31695619 ~ 31728020 (+) False golga1
XM_007229330.3 mRNA downstream 764102 31695619 ~ 31728020 (+) False golga1
XM_007229326.3 mRNA downstream 764102 31695619 ~ 31728020 (+) False golga1
XM_007229327.3 mRNA downstream 764117 31695634 ~ 31728020 (+) True golga1
TU74844 other upstream 222861 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 297846 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 2093090 28754030 ~ 28754817 (+) True G55218
TU74355 other upstream 2198794 28646064 ~ 28649113 (+) False asphd2
TU75269 other downstream 989303 31920820 ~ 31924095 (+) True G55831
TU75290 other downstream 1043164 31974681 ~ 31977419 (+) True G55844
TU75720 other downstream 2426697 33358214 ~ 33366012 (+) True G56160
TU75764 other downstream 2473057 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 2633311 33564828 ~ 33581368 (+) False izumo1

Expression Profile