RNA id: XM_022670521.1


Basic Information

Item Value
RNA id XM_022670521.1
length 6591
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC103026160
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33328786 ~ 33360143 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCGGGACTTGTGTGAGTACAGGTGGGGTTTGTGTGAAAACAGGCGGGCGGCGCGGGTGGGGCTGCAGGTTACTCCCACCTGTTGTGATGCAACCGGAACGTTGCCCCCCAGGGGAGAAAAGCACAGACTCGCAAACGGAGCTCCGCCGCTCGCTTCAGAACACAATACGAGCCCTTCAGCCGCCTTTTATTCATGAGGAGAGTTTCAGCTTAACTCGCAGAGCCGGGTCTGAGGCCTCCTGAAGTACCATGACTGTAAACCATGCGCGAAAGTGGCGAAAAGGAGGCGCAGGAAGATAACGAGAGTTCTGAGTCCGGGGAGGAGAGGGGACCGAGCTGGAGCAGTTACAGACTCCTCGTAGATCCTGTTTTAAAAGAAGGAACCGAAAAGCTGTACCGCTATGATGGGCAGTATTTCAGCTCTCCTAACCCTGGAATTCCTCCCCTGGAACAAGTCAGAGATCCCAGACTGGCTCGCTTTTGGACCAAGTTCAAAGAGACGGACCTTCCAATCCCCAAATTCAAGattgatGAAAATTATGTTGGACCACCAAAGGAGGTGACATTCGCCAGACTGAACGACAACATTAAGGAAGCTTTTTTAAGGGACATGTGTAAAAAGTTTGGAAAAATTCAAGAGCTGGAGGTTTTGTACAATCCCAAGAATAAGAAGCACTTAGGAATAGCCAAGGTCATCTTcgacagagtgagagaggcaAATGAGGCTGTGCAGAAACTTCACAACACCTCTGTTATGGGAAACAACATCCATGTGGAGCTGGACCCCaaagGTGAAAAGAGGATGCGATACTTTCAGCTTCTTGTCGGTGGGTTGTACACCCCGTTCACTCTGCCTTTAGGAGAAGAAGCCTGGGGGCCTCTGTCTCCATCGTACAGCTCTGACTCCCACAGTgAGTACGAGGCAGCGAAGAGACTGACACATGGCTTATTGTCTTCATCGCTCTCCTTATCTTCAGGACTCCTTAGCTCCACTTCATTCGATGCTTCCACCCCTCTGTCCATGGACACGGCCTACTCCAGCATGCACCAGGACACACCCAGCAGCTTCTGGCAAACCCCCCTGTACCAGGACACTCCCTACACCTCTCCCATGTCCCACAGTAACCCGGGAACCCCTCCCCAGTGTGAGGGTCTTTCCAATCTGTCCCAGTCTGTCCCAGATTTGCAGGTGCACGGTGCATGCAGCTCAAAAATATTCTCCAACATGACTCCTCTAATTTCGTCTGATTCTCAAAGTACCCACCCCAATCCTAACCTGGTGCAGCTAACTCCACACAGTAAAGCAGTGAACACGAGGCAGGGGgccttaattaatataatacaaaGCTCAAGGACTTCTAGAGGTCACATGGCATCGGGGTGCCAACCTCATGCAGTGGGAAGGGCCTCTCGGCGGGGTCCCAGGGGCCGTGTTTGGGGGCCGAAATACCAAAATGCCTACAACCGTAGGCCAGAGCACCACTATGTGCACAGACCTGTTTTCAATAGGCCTAAATATCGCTCTGGACCTGCAAACAGTCTAGTGCCTTTCCCTGCTCATATACAGCCAGATAAGCCTCTTATACCTGCTTCTCAAAGTGGAAGTGGTTCAGACAGACCCGCAGGTCTTTTGGGACAGAATACATGTGCTTTTATTAACACAGCCAGGGAAGTACCTGTTAATCCAGGTGCAGAATGTGCAGACAAGCAGACTCCAGCAATACCCCATAGTATCGGAAGCGCTGAGGTAAATCCTACACAAGCAAAGATGATTATGCATCTGGATTCACTGGTGAAAGCATTGGAAAACCCCCTTAAGACACCTTCCACATATCTTCCCAACACCACGCCTCCTCATGTTCCTGATACAAAGCAGGGGCCAACTGCTAGGACTCATAGCCCACTGCGACAGTGCACCTCTCCTGGACTGGGAAAAGGCCCACCCACTGGGTCACCTGCTCCAGATCCCACCCCAATCAGCCTGGACTCTCGTATCCAGATGCTTCTAGGCTCTCACGGTTCAAATCTTCCTTTAAACGAAGACACCTCAGACTCGGATTCGCACTCTGAAGAGCATTCTGTTGCTTCTCCCAACGATTTCCAGCACTCCTCTTCCAAATCTTGTCCTCCGTCACCTGAGCCACCTGATGTCACATCTATCTCTAGAGTCACCGTCAATTCCAGGCATCCTGCCTCTCCACAAAACCAGGAAGACTGTTCTGAGCCAGGTATTGAGGACGTAAGTCCCAGGTCACTTCCAGACTCTGTAGAAGAAGGAGAAGTATTTTCTCCAGACAGCTCACACGCGTCCAAGATACCAGTCATATCATCACATTATTCAGCGATTCGTCCGGCTCTTTCTCAACAAACAGCAACGCTGTTCCTCAGAGAAGGTGAAACTCTAGAACAGACTGGGCCTGGGACCTGTGGGGGAGGTTCCTCACCCTCTCCTCCTGTCTTCCGGATGCCTCCTCCTCCTGTTCTCCTCCCTCCACCAGGTTTCCCTGCCCTGTTTCCTCCGATGAGGCCTCCAAACTTACCTCCTCTGTGTGGACCTCCTTCTTTACTGCCTCCTGTTCCATCTCTGCTTAAACCCCTTCCTGCCAACCTCTCCATaccccctccccctttctatcccCCGCCACAGCTCCCCATGGGCCAGGTTGGCAGGCCTCAGAGGTGGAACAGTCCTCCCGCACCTCTTCCTATACCTACCAGGATAACACAGGGGAAAACACACCCCATATATTCCCCTCCTTTTCCCATTGCGCCAACACCTGCAGCCTTTCCTGGGGTTGCTGTTCCACAAGATGGAGCCAGACTAAGGCAGTGTCCTCCCTTTCCCTCTATTGGAGGTTCAGCTCCTGTTCCAGGATACAGAACCCCATGGCCGCCTCCAATCCTGCCTGTATTCGATCCTTCAGTGCCTCCACCAGGATATGTCCCTGTGAAAGAGTCTCTCCATAAAGCTACGGTGGATGGAGTGCTGGCTGCTGTAGCTGCTGAGCTCAGGGCCATTGTGAAGAAAGACATTCATCGCAGAATTGTTGAAGGCATAGCTTTTGCTGCATTTGACCAATGGTGGGATGAGCGAGAACGCACAGCCAAGGTACCTGTGACTCCTGTGAAGGCTGGAGAGAGTAAAGAGGTTCCAAAGCCATGGCATCCTGTGGAGGGCACAGGACCGGAGAGTGCAGCACTGGGTACAGGACTGGGATTGGGCCTTCGATCAACTCTCAAACTGCCCTCCTTCAAGGTGAAGCGGAAGGAATCCTTGGTGGAGGACTCTGTAGAGGCTAAAAGGACCCGTCCCCCTTCACCTGGAGTCTCTGAGGATGAAGAAGTAGAGCAGGACACACACCTGGAGGATAAAGCAGCGGATGAGCCCCAGAACACAGCTGACCTCTCTGTGGTAAAACGGCGGCATGCCAGGCCTCTGGAACTGGATagtgatgaagaggaggagggagagatGGACAAGTTGGAAGATTCAGAGTCTGAAAAAGAagagaatgaaaaaaacaagctttCAGTTGAAGATGAGGATGATGATGTGGAGGATGAAGATGAAAGAAAATTCAAGAGGCCTTCAAGTGTGCAAGAGGATGAAAATCAGTCTGAAGAGGTGATCAGCCTTGCATCTTCCAGCTTGCACTCGGAGCCCTTATTCTCCTCAGACCGGGATTACGATTCTGCAGTCTCTTCAAGATCTGACTTTGACTCCTCTGAAGAGAGTCAGTGCTCTGAGTCCTCtgaggaagaggatgatgatgaagaatGCGCTGTTGCTGAAAGGCCTGCTGAACAGagagtggtggaggagatctGGATATCATCAGATGAGGAGGATGCTGAGTATAAGGAAGTTATGGAAGTTGCTCACACTCCTGCTGCTGCATCTGTGATCTCCTGGGAGGAGGAGCTGGATCCCCCTCTGACCCCATCTGCACCACTGTCCAGTGATGAAGATCATTCACTACTAGGTGCTGATGCAGAGGAAGAGCTGAGGGTCAGAGTGTTTCTGCATGGCTATGGCTGTCAGGATCCCGTCACACAGCATCTGTCTAACAAACTAGAGCTGCAGGATCCTGCACTGCTGTCTTCAGCTGAGGAACTGGAGCTCCCGTGCCCACCTTCTCCATCTTATAAAGCATTATCTTCTGATGAAGAATTGGAGACCCAATCAGAGACTGAATTAGAGTATCAGGGAGATGCCATAGAAACACTAGAGGATTCGGGCAACCTTAGACCCCCCACACCTACTGGCTCCATGTCCGAGAGCGACCCTGAGCTGGAGCTTCGACACAGACATTCACCTCCTCCAGCTACGGAGGAGGAACTGCCCCATACCCCAGGTGGAGGGATAGAGATGGAGGCTGAAACTCCAGCTCTATCACCTTGTCCTCCTACACCTCTACCTCCTCCACCTTCACCTACCGGCCTTCATCGCTTTCCTTCACCTCCTGTTTACTTCTCTCCTCCCCCCTTACCCTCCTCATACCCCGCCTATGAGGAAACGCCCAAAACGCCTGGCAGGAATACCAGGCGAGAACATTCATCGCAGAGAACCGCAACAGCAGTGCACTCACAAGATGCACTACTAAGGGTGGTGATGCATGGCCCCTTCTCCCCATCCTTCACCTCCTCATCTCCCTGTGCTGGTAACGGGGTCCCTAGAACTCCAGGAAGAGACATCAGCCCTTCTTCACCGCTGTCAGATAACGGTGATGTAAGCATTCACCATAGAGAACAGTGTTATAATCAGAATCCTGGCTGGAGCTCCAGATATTCTCCAAGCTCCTCTGAATCCTCAGCTTCAGAGACACCCAGTCCTGTACAGAAGCCCCCAGATTTTGTAACGGATCGAGACTTCACACAACAGCAGCTTAATTTCTCCACCGATCGGATGAGAACTTTGGACGAGTCACGTctcagaaagagaaaagaacgaCTCCAGCACAAAAGGAGAATGATCTTCTTGCAGAAAAACAGATTCAGGCAAAATGTGGATGACTTGTCTTGCACACCAGCTAAGAAGGTGATCTCTAAATCATCCTGGGATCCTGAAGCTCCAGGTCGTAATGAGCGAATTAATGGGGAACGAACAGAGACCCAGAGCAAAAGGCCACTACAGGGGCTGGAGAACAGAGTGGAGAACAGGCTTGAGGGAAGGGGAATGGAGAACCACACACTTTCAGAGTCACTGGACAGGTGGAGAAAAAGGAGACGGTGGTCACACAGACCTCCACACTGCTGGCGACGCTTTGCTCCACGCTCTCAGCGGAGAGAAAAACTGGTCCTTAATGCTGTCTGGACCAGAGGGGTGAATGTGGAGGAGATCGGTCACCTGCGGGCCTCGTATGAGAGAATGCTGCTGCAGGACAGCAGTCACTGGCTGAGCAACACACACTGGGTTCATCACCCTCCCAGCAGTGTTCCTGAGGAAAATGTGTGGAGGGAAGGAATTCGGTATCACTACACTGGAAGTGCACGGACAGAAGGATATTATAAAATCAGCAAACGGGACAAGCTGCGATACCTTCGTCACACACACCCCCCCGCAGAGGAACCTCCACAGGACACTCAGCTTCCATCGTCATCACGGTCTGGATCGGATTTCCGTGCAGAACAGCGCCGCCTACTGTCATCTTTCAGCTGTGACAGCGATCTTCTCAAGTTCAACCAGCTCAAGTTCCGGAAGAAGAAGCTGCGCTTCAGCAGGAGTCATATTCATGACTGGGGGCTGTTTGCTGAAGAGCCAATCGCTGCAGATGAGATGGTAATCGAATATGTGGGCCAGAGCATACGACAGGAAATAGCAGACATGCGTGAGAGACGATATGAGCAGGAGGGCATCGGTAGCAGCTACCTGTTTAGAGTCGACCAAGATACCATCATCGATGCTACAAAATGTGGCAATTTGGCCAGGTTCATAAACCACAGCTGTAATCCAAACTGCTATGCTAAAGTCATCACAGTTGAAGCTAAAAAGAAAATAGTCATCTATTCACGCCAGCAGATCGGCATCAACGAAGAGATCACGTACGATTACAAGTTTCCCATCGAGGACGAGAAGATCCCCTGTTTGTGTGGAGCAGAGAACTGCAGAGGAACCCTCAATTAGAGTTTATGACACTATATGACAATGTCCAAGAGCCATTATCTAAACAATGCAAAATTCATCCATCCTGTAGACATGGGAGACATCTTTTAAAGCCTTTTGTGAAGATGTGGAAATGTAACTGGCAATGAAACTGATGCACACACTGCTACATTTTGTATGTTGAGCATCAGATATGGTATCTGGATGATTATGCAAGTATTATAAATGGGTTATAAAAGCCTTGTGTAGTTTTACTCGGTTGTAGACTCTACTATATTGTAGAAATGACGATGAGCAACAATGttttatacatgtatttataatatgtaCCCAGCAGGAGGCAGCGTTGTACACAGTTTGATTCTCAGCACTTGTACAGTTCTTCTTATCCTTAACAAAAGCtaaatacttaatttaaaaagcatattcAGCCTGTGTGATTTTATAGTTAAACATGCAGGATGAATAAAGTATTTTCTTGCAAGAA

Function

GO: NA

KEGG:

id description
K11422 SETD1, SET1; [histone H3]-lysine4 N-trimethyltransferase SETD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75699 lncRNA upstream 102370 33220526 ~ 33226416 (+) True G56147
TU75586 lncRNA upstream 151179 33149918 ~ 33177607 (+) True G56075
TU75508 lncRNA upstream 499967 32549171 ~ 32828819 (+) True G56003
TU75550 lncRNA upstream 512943 32815008 ~ 32815843 (+) True G56040
TU75514 lncRNA upstream 610460 32651026 ~ 32718326 (+) True G56008
TU75774 lncRNA downstream 102267 33462410 ~ 33466117 (+) True G56201
TU75778 lncRNA downstream 120767 33480910 ~ 33483273 (+) True G56203
TU75790 lncRNA downstream 162960 33523103 ~ 33533957 (+) True G56213
TU75818 lncRNA downstream 248552 33608695 ~ 33609257 (+) True G56235
TU75870 lncRNA downstream 279652 33639795 ~ 33640074 (+) False LOC103037863
XM_022670917.1 mRNA upstream 598878 32713549 ~ 32729908 (+) True LOC111192715
XM_007229366.3 mRNA upstream 888775 32417679 ~ 32440011 (+) True rflna
XM_022670517.1 mRNA upstream 1077777 32244560 ~ 32251009 (+) True LOC103025291
XM_007229351.3 mRNA upstream 1086227 32221177 ~ 32242559 (+) True LOC103022464
XM_007237390.3 mRNA downstream 15876 33376019 ~ 33378613 (+) True LOC103024594
XM_007234214.3 mRNA downstream 143472 33503615 ~ 33509374 (+) True gck
XM_007234212.3 mRNA downstream 151368 33511511 ~ 33520503 (+) True LOC103039216
XM_007234213.3 mRNA downstream 151970 33512113 ~ 33520503 (+) False LOC103039216
XM_022670920.1 mRNA downstream 218450 33578593 ~ 33595818 (+) True izumo1
TU75290 other upstream 1351367 31974681 ~ 31977419 (+) True G55844
TU75269 other upstream 1404691 31920820 ~ 31924095 (+) True G55831
TU74844 other upstream 2703740 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 2778725 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 4573969 28754030 ~ 28754817 (+) True G55218
TU75764 other downstream 44431 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 204685 33564828 ~ 33581368 (+) False izumo1
TU75801 other downstream 217568 33577711 ~ 33581368 (+) False izumo1
TU75803 other downstream 218563 33578706 ~ 33581368 (+) False izumo1
TU75961 other downstream 1145312 34505455 ~ 34511642 (+) False fgf17

Expression Profile