RNA id: XM_022670547.1


Basic Information

Item Value
RNA id XM_022670547.1
length 2085
RNA type mRNA
GC content 0.41
exon number 14
gene id polb
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35265968 ~ 35274621 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGGAGGGGCTTATCTGTGGAGAGCAGCTGCAGACCCACAGCTTTGTCTCCAGCGTTTCACCCTCAAACTACCCCACAGTACAGATTACAGCGAATAAACCCCAAGATAAACACCGCACAGAACCGCAGATAAACATGAGTAAGCGCAAAGCCCCGCAGGAGACCCTGAACGAGGGAATCACCGACTTTCTCATCGaaTTGGCCAATTATGAAAGAAATGTCAACAGGGCCATTCATAAATACAACGCCTACAGGAAAGCTGCCTCTGTGATTGCTAAATACCCACAAAAAATCAAAAGTGGCACTGAAGCAAAAAAGCTGGATGGAGTTGGTGCAAAGATCGCTGAGAAAATAGATGAGTTTTTATCCACAGGGAAACTCCGTAAACTGGAGAAGATTCGCAGTGACGACACCAGCTCATCTATTAACTTTTTAACTAGAGTGACTGGAATCGGCCCGGCTGCTGCTAGAAAGTTCTTTGAGGAAGGAGTAAAAACTTTGGAAGATCTGAAGAAAATTGAGCACAAACTGAATCACCATCAGCAAATTGGTCTTAAATACTTTGAAGAATTTGAGAAGAGAATTCCCCGCTCAGAGATGCAGAAAATGGAGGCTCTGATATTACAAGAATTAGAGGAGTTGGACTCGGAGTACATTGGCACCATCTGTGGCAGCTACCGACGAGGCGCGGAATCGAGTGGTGATATTGATATCCTGCTGACTCACCCGGACTTTACTTCAGAGTCTGAGAAACAACCGAAACTGCTTCATGCTgtggtggaacacctggagtcGATTGGCTTTATTACTGATACTCTTTCCAAAGGAGACACTAAGTTCATGGGTGTGTGTCAGCTGCAcaaggaggatgaggaggacgAGGATCGTGATCACCGTCGTATTGATATCAGACTGATTCCTAAGGATCAGTATTACTGTGGTGTGCTGTACTTCACTGGGAGTGATATATTCAATAAGAACATGAGAACCCTCGCTCTGGAGAAAGGCTTTACTCTGAATGAGTACACTATCCGTCCGCTAGGCGTCACTGGAATGCCTGGAGAGCCGTTGCTGGTGGACAGTGAGAAGGACATCTTTGACTACATTCATATGAAATACAGAGAACCTAAAGAACGCAGCGAGTGAAGAACagaacaataaaactgaaatacgCCGGTGCTCTTTCTCGTCTTCAGGGccgtatatatattatattatattggtaTTTAGTTCAGTTATAGGTTACAGTCTTTCTTCAGAAGCAGGTGCTGCGTTTAGGGTTTAGGGTAGAGTTGTGTGTTGTGAATGAATGAGTTATGAAACAGTAGCTGAGAGTCTGAATAATGTAGAATGtgagacatttttatttaagatcatgAGAAAAGTGATAacgacagaaaaaaacagactgaATGCAGAAGAAGTTGACGACGCTCGTCAGTGAGCTGTTATTTACGtatttctggattttttttatgttttctcaaTAATTTGAATACATTATACAAGggttttatgttatttaaaatgtttgtcattttttaatgatttgtttTATCATGTGTAGAAGCTCTGCATCAAGCTGTGACAAATGGaagccatttaaaaaaacttcTATCCTTCACTCACTCGCAGGTTTAAGTTActgttacagtatttttttgtttgtttttaaaaggtaattttcttgtttttgggATGATATGCTTTAATATTTGTTATTGATGACTGGTTTGTGTGAAGAGAATACAACGTGCTGAAGAAATGATTAAACACGAGCGTAATCGATCATGTTTTATAAGCGCAGTGATTGATGAGCTGAGTAATATGTAATGAAAAAAGGAAGTGGAGATGATCAGAATGTTTTATGGTGCTATAAACTGGATGTTATATATTTAGTCTGTTTGAGGAAGTTACTGAGAGCCGGAGATTAAAACACTCCTTTGCTATTTTTACCCACAGTGCTTTGGTGCTTTTGTTCACATGAAAACACTATCCAGTACCTCAGGGCTGGACTCCAGAGTGTGGCTGTGTGGAAGATCTGAGTacaactgtataaaataaactTCCTTGCTGAAACAAAAA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006284 base-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K02330 POLB; DNA polymerase beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76152 lncRNA upstream 11298 35246801 ~ 35254670 (+) False ikbkb
TU76155 lncRNA upstream 11966 35253318 ~ 35254002 (+) True G56479
TU76149 lncRNA upstream 16317 35246801 ~ 35249651 (+) False ikbkb
XR_002650116.1 lncRNA upstream 47186 35217891 ~ 35218782 (+) True LOC111192732
TU76134 lncRNA upstream 66700 35197445 ~ 35199268 (+) True G56465
TU76140 lncRNA downstream 1473 35276094 ~ 35279120 (+) False LOC103032256
TU76142 lncRNA downstream 1473 35276094 ~ 35284271 (+) True LOC103032256
TU76159 lncRNA downstream 10830 35285451 ~ 35286662 (+) False G56482
TU76160 lncRNA downstream 10830 35285451 ~ 35287472 (+) True G56482
TU76171 lncRNA downstream 37494 35312115 ~ 35315555 (+) True G56487
XM_007229136.3 mRNA upstream 618 35259920 ~ 35265350 (+) True enkd1
XM_022670542.1 mRNA upstream 18625 35226485 ~ 35247343 (+) True ikbkb
XM_007229137.3 mRNA upstream 70303 35191804 ~ 35195665 (+) True LOC103034472
XM_007241248.3 mRNA upstream 176783 35083719 ~ 35089185 (+) True snap29
XM_022670533.1 mRNA upstream 182676 35039169 ~ 35083292 (+) False LOC103037259
XM_007229129.2 mRNA downstream 1458 35276079 ~ 35278890 (+) False LOC103032256
XM_007229132.3 mRNA downstream 19302 35293923 ~ 35296002 (+) True mrpl40
XM_007229134.3 mRNA downstream 25173 35299794 ~ 35308446 (+) True gle1
XM_007229127.3 mRNA downstream 34004 35308625 ~ 35311487 (+) True LOC103031612
XM_015603858.2 mRNA downstream 62651 35337272 ~ 35340070 (+) True naif1
TU76153 other upstream 26868 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 514405 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 754326 34505455 ~ 34511642 (+) False fgf17
TU75801 other upstream 1684600 33577711 ~ 33581368 (+) False izumo1
TU76213 other downstream 146166 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 681483 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1730652 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4770032 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 5325370 40599991 ~ 40600062 (+) True trnaw-cca_40

Expression Profile