RNA id: XR_002650079.1


Basic Information

Item Value
RNA id XR_002650079.1
length 2018
RNA type misc_RNA
GC content 0.46
exon number 11
gene id acaa2
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35285422 ~ 35293421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAACAGCTGTGGCGGTCCGCTCCTCAGTAGGTGAAAGGTTGTCTGCTGAGTGTCCGCGAGCTGTGTTTTATACTGGGGTCCTGAGACTGACCTTCCTGCACTTAATATAACTATAATCACCATTATGTCGCTTTTAAGAGGTGTTTTCATCGTTTCAGCTAAGAGGACTCCGTTTGGGACGTACGGTGGCGTTCTCAAAGACCACACTGCCACAGATTTGGCTGAACATGCGGCTAAAGCTGCCCTCGCTGCTGGAAAAGTTGCTCCAGAGATCGTCGATAGTGTGATTGTGGGAAACGTCATGCAGAGTTCTGCAGATGCTGCATATATTGCGCGTCATGTGGGACTGAGGTGTGGGGTGCCGATACCGACGCCGGCACTGACGGTAAACCGTCTCTGTGGATCAGGATTCCAGTCCATCATCAACGGAGCTCACgaGATCTGTCTTAAAGAGTCAGAGGTTGTACTGTGTGGAGGGTCAGAGAGTATGAGCCAGGCCCCGTACGCTGCTCGCAACATCAGATTTGGCACCAGACTTGGACTTGACCTGAAGcttGAGGACACTCTGTGGGCGGGGCTCACTGACCTCCACATAAAGACACCGATGGGCGTCACAGCAGAGAACCTGGCAGAGAAATATCAGATCAGCCGGGAGGACTGTGATCAGTACGCCTATCAGACTCAGCAGAGATGGAAAGCAGCTCACGAGGCTGGATACTACACCGCTGAGATCGAGCCCATCGAGGTGAAGGGCAAGAAGGGCAAAGTGCCCATGACCCACGACGAGCACCCCCGTCCCCAGACCACGCTGGAGCAGATGGCCAAGCTGCCGTCCGTCTTCAAAAAAGGAGGAACAGTTACTGCAGCTAATGCTTCTGGTGTGTCAGATGGTGCGGGAGCCGTGGTTATAGCCAGTGAGGATGCTCTGAAGGAGCACAAGCTCACCCCATTGGCTAGAATCGTGGCCTATCACGCCTCAGGCTGTGATCCCAGTATAATGGGCATTGGTCCTGTACCTGCTATAACTGCGGCTCTGAAGAAGGCGGGACTCTCACTGAAAGACATGGACCTGGTGGAGGTGAATGAAGCTTTTGCTCCTCAGTATTTAGCGGTTGCTAAAGCTCTGGGACTGGACCCAGCGAAGAGTAACGTTAACGGAGGGGCTATTGCTCTCGGACATCCACTCGGAGCCTCTGGAACCAGAATCATCGCACACTTAGTGCATGAGCTCAGACGCCGCGGCGGCCGGTATGCTGTGGGCTCAGCCTGTATCGGAGGAGGACAGGGCATTGCCATAATCTtggaaaacatgaaataaacagaGCGTTAATCATGTATATGTTCATACAGACATCATGTTTAGACACCATGATTAAAGAACACTCCACAGAACTCCGCCCACCTGCCAATCATCATTAAATCACCATGATCTTCAAATAACAtgcatatgaaaaaaaaaacatctttaataataaatctctgagaactcttaatgtgtttataatgTGAATTgtgtgacattaaaaaaaactttgaacaCAAATTAATCCTGTTAACAAAACTACAGAGTCTGGGGATGCATCAGcgctttttttagttttagtgctGTAAATCTCGTAAAGTTCTtcagtgtggaatatggagctacactagtgttTATTTCCTCCTTCAAAcctctcagttaaactcagcaACACATCACATTACAATATTCCCATTTAAAAGCATCAAAAATACCCTGAGATTATTTAGtacatggtaaaaataaaaatcggGATCTTTTCTGCCAGAGCTAAACCACACTTCACTATTGTTATGGTCTTCCTCCCGAacagtatttttatacataaaaatcacatttaatcacaAGTAATCAGTAGAAATACTCCAACATTAACTCTAAGTTGTTCCACTGAAAGGTTTTCATTCTtcttctgtaaaaaataaatgcagttttgaaaatgtaaatccTTGTGTTCTGTTTTCCAATAAAGAGAGcaagtgcagtgaaatgtaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76354 lncRNA downstream 6532 35275947 ~ 35278890 (-) True G56602
TU76352 lncRNA downstream 6532 35277921 ~ 35278890 (-) False G56602
TU76350 lncRNA downstream 13132 35265893 ~ 35272290 (-) True G56600
TU76318 lncRNA downstream 108443 35176438 ~ 35176979 (-) True G56580
TU76302 lncRNA downstream 190734 35090730 ~ 35094688 (-) False LOC103038119
TU76373 lncRNA upstream 28568 35321989 ~ 35324610 (-) False LOC103038782
TU76382 lncRNA upstream 57404 35350825 ~ 35367301 (-) True G56620
TU76393 lncRNA upstream 91357 35384778 ~ 35460652 (-) True G56631
TU76401 lncRNA upstream 127409 35420830 ~ 35421371 (-) False G56638
TU76404 lncRNA upstream 127409 35420830 ~ 35424473 (-) True G56638
XM_007229130.3 mRNA downstream 1132 35279823 ~ 35284290 (-) True rpl6
XM_022670544.1 mRNA downstream 26190 35246793 ~ 35259232 (-) False vdac3
XM_022670543.1 mRNA downstream 26190 35246793 ~ 35259232 (-) True vdac3
XM_022670546.1 mRNA downstream 26205 35246793 ~ 35259217 (-) False vdac3
XM_022670545.1 mRNA downstream 26213 35246793 ~ 35259209 (-) False vdac3
XM_022670550.1 mRNA upstream 2920 35296341 ~ 35299750 (-) True c6h22orf39
XM_007229128.3 mRNA upstream 17268 35310689 ~ 35315573 (-) True LOC103031932
XM_007229126.3 mRNA upstream 22861 35316282 ~ 35320788 (-) True LOC103031304
XM_022670551.1 mRNA upstream 28564 35321985 ~ 35332434 (-) True LOC103038782
XM_022670957.1 mRNA upstream 74228 35367649 ~ 35370960 (-) True LOC111192733
TU76301 other downstream 177029 35093551 ~ 35108393 (-) True LOC103038119
trnaa-agc_13 other downstream 1924981 33360369 ~ 33360441 (-) True trnaa-agc_13
XR_002650076.1 other downstream 2107772 33149074 ~ 33177650 (-) False LOC103023237
TU75652 other downstream 2483269 32781276 ~ 32802153 (-) False LOC103021360
TU74381 other downstream 6684912 28598278 ~ 28600510 (-) False LOC103031600
TU76360 other upstream 2925 35296346 ~ 35299589 (-) False c6h22orf39
TU76403 other upstream 127409 35420830 ~ 35422149 (-) False G56638
TU76749 other upstream 473349 35766770 ~ 35767677 (-) True G56887
TU76790 other upstream 546026 35839447 ~ 35844514 (-) False bicdl1
TU76808 other upstream 635059 35928480 ~ 35947810 (-) False mrps36

Expression Profile