RNA id: XM_022670560.1


Basic Information

Item Value
RNA id XM_022670560.1
length 3141
RNA type mRNA
GC content 0.40
exon number 11
gene id LOC103030661
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35371911 ~ 35390172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacacacacacacacacacagcccgctgttatctctctctctcaggcctgtgtgtgtattgatGTGTTTTTGAGGACGGGATGGATTTCAGTGTGAAGAAACTCGCCTGCGATGCCGGAGTTTTCTTTTCTCGAGCTGTTCAgTATACAGAGGAGAAACTGGGCCAGGCCGAGAAGACGGAGTTGGACGCTCACTTTGAGAGCTTGCTTGCCAGAGCAGACTGCACCAAGAACTGGACCGAGAAAatctacagacagacagaagttCTGCTACAGCCAAACCCAAGTGCCAGGATCGAGGAATTCCTTTATGAAAAACTTGATAGAAAACTTCCGTATCGAGCCACTAATGGAGAAATTCTGGGCCAGTATATGCTCGAAGCGGCCAAAGAGTTTGGACCAGGAACACCGTATGGGAGTACCCTGATTCAGGTGGGTGATTGTCAGAGGAGGCTGGGAGGAGCTGAGCGAGAGTTTCTCCAGACGTCCTCGATTAGCTTCCTCACACCGTTACGCAACTTCCTGGAGGGAGACTGGAGGACAATAACGAAAGAGCGGAGGCTGCTGGAGAACCGGCGGCTGGATCTGGACGCCTGTAAAGCGAGGCTAAAAAAGGCTAAAGCAGCAGAAGCTAAAGCTGCTGCAGTTCCAGATTTCCAAGAGACCAGACCTCGAAATTACGTACTGTCTACAAGCGCCTCGGCCCTCTGGGGTGAAGAGGTGGAGAAGGCGGAGCAGGAGCTGCGATTGGCTCAGACAGAGTTTGATCGGCAGGCGGAGGTCACGCGGCTGCTTCTGGAGGGAATAAGCAGCACACACGTGAATCATTTGCGATGTCTGCATGAGTTTGTTGAAGCTCAGGCCACGTATTATAACCAGTGTCATCACTTCATGCAGGAGCTGCAGAAAGAGCTCTCCAGACGGTACCCGAACTCGTTTCTGGTGAACCCCAGATCAGTCAGGAGCTCCTCTGGAGACGCCTCCTCCACCGTACCTGTAAACTCTCTGAGTCCGGAGGCGGAGGCTCTGCAGATCGAGGAGGTTCAGCCTCCCGCCAGCGGAACTCGGAAAGCTAAAGTCCTGTACGATTACGACGCTGCGGACTCCAGCGAACTCTCACTCCTCGCAGACGAGCTCATCACAGTGTACACGGTTCCAGGGATggactctgattggctgattggaGAAAGAGGAAATCAGAAAGGGAAGGTGCCCGTCACGTACCTGGAGCTTTTAAGCTAAAAATTCTGTTTAGAAACAGGAATTAATGCTTCAATCACATGCACTAACATGTTATTATTCAGACACGAACTCGGATTCATACGTCTGATACAAAACTTAGTACTCTGAGAgtgtttaatctgtttttattttattttattttagttttagtttactgACTCTCTGCAGCCATATTTAAAGCGCTCTGGAAAAGCTTTTTATTTCACTACATCCTGAATTAACCATTCAGACAAAATTAACCAATTTCTGATCCTACATTTCAGCATGATCACATTCCAGCAGCATCACATCTCTCTTAAATTTTCCAGCAgccaaaaaaaagccaaaacgCATCTGAAAGCCACACTAAGTGCTTCAAATCAGAATCTCCAGAGATTAATGTAAATATCTGCCTGTTAATCCGTTTATATACTAGAAAATAACCTTCTTCTTTTCAGTTTCTGTATCTGATCACAGCTTTACGTCTTCCCTCCTGGATTAATCTGCTCTAAAGTTCGCCGCAGGTCAGTTTTGGTGTTTATCTGCTCGTCTGTTCGCTCTGTTTTAGTGACTCAGCCTTAAAAAGGACCTTCCAGAGCCTCTCTTATCTACTATAGCCTTAATATACCTCTCAGAATGTAGCAGCCAGACTCCAACTCAGcgcaaaacactgtttacaaaagCCATGATCCCAGAAAAACATCTCAAAAGAtgctgttaaatatatattaacatataataatatatattaattaatatatgataatatgtcacttgtgtcaatgttGTCTCATTGCTTAATGCATAAAGCTGATGCTTATTTAAGTAAATGTGCATTAGGCTAgatttattttacactgaaaaaaataaaaatgttgcttTGAATTTAAGTGTGAATTAAAATATGACTATAACTGGTTTCAAGCCATTAACACAATTACAATCCTTAAAAAGCAACTGGAAAACATGGCAACCACCTAAAGAATCTGGGAGCTGATTGTTTGTTCTTtagatttacattaaattataaataaaaaaaaaatctgaattgcaTTGATGcaacattttaatttagtttctctacatttctttaaattcaaagcactttttttagtgtaaactaaaaaaatcacattggaCTGAGATAACAGTAAAGAGGGCAGTGATGATGCCAAATAAGTCAGTAGCCACTTCAGattgcattttaataaaaataattaatggagATCAGACTGCAGAGCGTAGACGAGTTTATGTAGTTTAAAATTCTGAAATTCTGGGAaatgcatgtttatttattaaatttgttttattttaatgataaatataCACAACCCAAATTCAGATGTTAGAGATCTTTCCATACTTTTCAGCAAATACGCCAAGAATCCGCGATTTAAAGATGATCAAAGATGATCAAAGATGTCAAATGTAATGCTCAGCGTCAGCATGCAGCCTGAATccttataaaacacttttttacgtATTCGCTGAAAATAAATGGTTTGTGATTTTGGTTGTTTTGCACCGTTTGCAGTGTATATAgctgcttttttgttattttttgccTTAGAGAAAGGTGGTGCAGGTTGTGCGAAGGATGAATCTgaaagattattttatttatttcacttatttattcagaacacttgaaaaatctaaaaaaactttctttgtAATTAAGTTTTAAGCCAATGTTACACTAAAGTTCTATGAGTACCTCTTCTTAACATTTATTTGGAACATTGTTAATATTCagtttgcattattattattattattaataatattattattatgcattgttgtgttttatttaatatttgccATATTAGAAGCTTGTTTTTGTGGCCAAACATCCAGATGAGGAAGAAGCttcttcatgatttcttattttttgcatgttttgtcaC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76181 lncRNA upstream 51139 35319879 ~ 35320773 (+) True G56492
TU76171 lncRNA upstream 56357 35312115 ~ 35315555 (+) True G56487
TU76160 lncRNA upstream 84440 35285451 ~ 35287472 (+) True G56482
TU76159 lncRNA upstream 85250 35285451 ~ 35286662 (+) False G56482
TU76142 lncRNA upstream 87641 35276094 ~ 35284271 (+) True LOC103032256
TU76205 lncRNA downstream 2130 35392302 ~ 35468036 (+) True G56499
TU76216 lncRNA downstream 30546 35420718 ~ 35458877 (+) False G56504
TU76212 lncRNA downstream 30615 35420787 ~ 35421618 (+) False G56504
TU76214 lncRNA downstream 30615 35420787 ~ 35421165 (+) False G56504
TU76416 lncRNA downstream 139732 35529904 ~ 35530234 (+) True G56649
XM_022670552.1 mRNA upstream 6707 35341479 ~ 35365205 (+) True LOC103038477
XM_022670554.1 mRNA upstream 6707 35341479 ~ 35365205 (+) False LOC103038477
XM_015603858.2 mRNA upstream 31842 35337272 ~ 35340070 (+) True naif1
XM_007229125.3 mRNA upstream 31842 35337275 ~ 35340070 (+) False naif1
XM_007229127.3 mRNA upstream 60425 35308625 ~ 35311487 (+) True LOC103031612
XM_015603846.2 mRNA downstream 15282 35405454 ~ 35437427 (+) True LOC103030350
XM_007229122.3 mRNA downstream 204811 35594983 ~ 35605830 (+) True lhx2
XM_007229121.3 mRNA downstream 328777 35718949 ~ 35724427 (+) True LOC103029489
XM_007229120.3 mRNA downstream 328781 35718953 ~ 35724427 (+) False LOC103029489
XM_007229119.3 mRNA downstream 337175 35727347 ~ 35734257 (+) True ctu1
TU76153 other upstream 132812 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 620349 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 860270 34505455 ~ 34511642 (+) False fgf17
TU75801 other upstream 1790544 33577711 ~ 33581368 (+) False izumo1
TU76213 other downstream 30615 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 565932 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1615101 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4654481 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 5209819 40599991 ~ 40600062 (+) True trnaw-cca_40

Expression Profile