RNA id: XM_022670596.1


Basic Information

Item Value
RNA id XM_022670596.1
length 2103
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC103045252
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36796730 ~ 36818211 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGAATCCACCTCCTCCTCTGCGCTCGTCTTTATATGTGTTAGTCTCtgttcctctgtgtgtgtgacggagtgtgtgtgtgtgtgtcggagagtgtgtgtgtgtgtctgggagCTCCAGACGCTCTCGTGGAGTGTGTCGGTGTGTAGCCGGCTCCATGGCGTCCTGCCCCGGGGAGAACGAGTTCCCCTGCGGGTTTCCTCAGAGCATCTGCGACGACCTGCCCCCCGTACACTTCCTCTGCAGCAGCTGCAACAACGTGCTGAACGAAGCCCACCAGACCCAGTGCGGACACCGGTACTGCCGAGCCTGCGTCATGTGGCTCCTCAGaaataataaggaTCTGATTTGTACGAAGTGTAAAGAAGATCCCGGCAGTGAGAGTGACTCCAGCATGATGCTCACTCTGGACCACTTCTTCAGTGATAACGCCATCAATAAAGAGATTCAGGAGCTGAGGGTGCACTGCGTCAACCAGGGCTGCGGCTGGAGGAGCACCCTGAAGGACTTTGAGGATCACCAGAGTCAGTGTGAGTACGCTCTGATCCCCTGCAACATCGGCTGTGGTCTGATGGTGCTGAGGAAGACTCTGGCCACTCACCTGGAGAAAGGATGTCCCAACAACAAGACCACATGCCAGGTGTGCTGCTCCGCTCTGACCCCTGCTGAACTGCAGAAGCACTCTTGTTCTAATGGAACTGAGAAGGATCTGTCAAAAGCAGAGAAACGAAAGAAGgACAGTAAGCAGGAAAGCCCAAAGCGGAAAGAGACGTGTGTCTTTTCTGAAATCGGATGCACGTTTAAGggtAACCCGGATAAGGTCCGTGAGCACGAGGTCAGCAGCACCAGCGCTCACCTGCATCTCCTGGTGGAGGTCGTCAGGAACGTCCAGATGTCGGTCCCGCCCCCACCTGAGAGAACTGTCCAATACCCTGCTCTGGATCTGCACCTCCAAAACCAGGACATGACCCCCCTTCCAGACATCACTCTGAATGGCGGCGAGTTGGAGACGGACAGCGGGGACACGGGAGCCAACGATAAAGCCCTGAGTCTACACGACGACCAGGCCGAGCTGGAGGTGGGTCAGCAGCTCCACGCCCTCCAGCAGAGGCTTCAAATCATGGAGAACATCATCACAGCTCTGAACCGAGAGGTGGAGAAGACCCAGCTGACCGTGGTGGTGCTGGAGAGAGACAACCACAACAACATGAACCTCATCCAGCACCTAGAGGCTGTGGtagcggagcagcagcagagactgaTCAGGAAAGACCTGCAGATCTCCTCCTTACAGCAGAGCATCAGCGCTCAGCAGGACGTCTCCTACGACGGCACCTTCCTCTGGAGGATCTGTGATGTCAGTCAGAAGCTGAAAGAAGCTGCCACAGGGCAGAAGAGCAGCCAATACTctccagcattttataCATCCAGATACGGCTTTAAAGTCTGCATGCGGCTGTACATGTACGGAGATGGAGTGGGGAAAGGAACGCAcatctctcttttctttgttaTTATGAAAGGAGATTATGATCCTCTGCTTTCGTGGCCCTTTAAACAAAAGGTGACGTTCTTCCTGATTGATCAGAATCAGAGGGAACACGTGGTGGATGCGTTTCGTCCTGATCTCCGCTCTGCGTCTTTCCAGCGTCCCGTCTCTGAGATGAACGTGGCCAGCGGCTGCCCGCTCTTCTTCCCTCTGTCTAAGCTGCGTTCGCCCAAGCACGCCTACGTGAAGGACGACACGCTCTTCATCAAGTGTGTGGTGGATCCGTCCTACTGAGCGGAAAAGGACTAACTGCATCAACACTGTTTAAAACTAACGATTTAAACCCAGATTGGAATTTCTTACTtcaatatttattgattttaatagcTCAGCTATTTTGAGGCAGTCTTAAAATAGTTAATTGCCTTTACTATAATAAGGTACgggtatatatatgttttttttatacatatattttttatatctttaatatttatttttttatgaaactgAATGTACATTTGATgccaaaaacatgcaaaaaaaaagtgattgtaGCAAATGACACACATTttcaacacattttcaataacaaataaaatctgATGAATAAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0007165 signal transduction biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03172 TRAF1; TNF receptor-associated factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76927 lncRNA downstream 193302 36600038 ~ 36603428 (-) True G57012
TU76924 lncRNA downstream 383981 36411235 ~ 36412749 (-) True G57010
TU76925 lncRNA downstream 383981 36412185 ~ 36412749 (-) False G57010
TU76928 lncRNA downstream 388278 36408175 ~ 36408452 (-) True G57013
TU76902 lncRNA downstream 465162 36314025 ~ 36331568 (-) True G57000
TU76964 lncRNA upstream 7556 36825767 ~ 36833067 (-) False G57043
TU76963 lncRNA upstream 9183 36827394 ~ 36833067 (-) True G57043
TU76965 lncRNA upstream 9183 36827394 ~ 36839252 (-) False G57043
TU77051 lncRNA upstream 225116 37043327 ~ 37058088 (-) True G57107
TU77074 lncRNA upstream 299233 37117444 ~ 37207042 (-) True G57121
XM_022670595.1 mRNA downstream 4286 36785308 ~ 36792444 (-) True LOC111192678
XM_022670594.1 mRNA downstream 18420 36755166 ~ 36778310 (-) False LOC103045561
XM_022670593.1 mRNA downstream 18420 36755166 ~ 36778310 (-) True LOC103045561
XM_022670926.1 mRNA downstream 50096 36680166 ~ 36746634 (-) True LOC107196826
XM_022670590.1 mRNA downstream 155167 36605407 ~ 36641563 (-) True LOC103045855
XM_022670958.1 mRNA upstream 225590 37043801 ~ 37048616 (-) True LOC107197187
XM_022670597.1 mRNA upstream 232509 37050720 ~ 37061698 (-) True slc2a6
XM_022670612.1 mRNA upstream 462902 37281113 ~ 37299298 (-) True brpf3
XM_022670613.1 mRNA upstream 483918 37302129 ~ 37326736 (-) True LOC103043112
XM_022670620.1 mRNA upstream 572231 37390442 ~ 37476012 (-) True LOC111192681
TU76973 other downstream 4292 36785462 ~ 36792438 (-) False LOC111192678
TU76959 other downstream 58516 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other downstream 73365 36690345 ~ 36723365 (-) False LOC107196826
TU76929 other downstream 393432 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 476035 36319056 ~ 36320695 (-) True G56987
TU77626 other upstream 2703333 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 2703333 39521544 ~ 39562891 (-) False LOC103030299
TU77629 other upstream 2703333 39521544 ~ 39562891 (-) False LOC103030299
TU77630 other upstream 2703333 39521544 ~ 39562891 (-) False LOC103030299
TU77631 other upstream 2703333 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile