RNA id: XM_022670610.1


Basic Information

Item Value
RNA id XM_022670610.1
length 2085
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC103043413
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37254838 ~ 37278390 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACCGCTGTCAACATTACAAATGTAAGGGGAGTGAAATCGAGAGGATATTGAGAGAGTCGAGGCAGAGAACATCTCGAGCTGGTATCTCTGTGGGTATCTCTGTCAGCCACACTAATGAGGGAGTGGACGGATCATGATATGGGCGTGGCGCCTGGAGGTTACCTGTCAGGTGTAGACGCCTACGGCATTTCAGAACCTCTGCAGTATTACGATGTTCTGGTGGACCCGCTGGGGTACCCGTATCAGGACCCGGACCTGCAGTGTTTTTCCTACGGGCAGCAGCACTACAGCCCCCCCAACGTCCAGCTCTCCATGTACACACCCCCCGGCTCTCAGCCCTGTAACCCCCCCTACCCCTATAGCCCGCAGTGCCCCGAGCCCCCCTGTGAAGCAGATATGGATCTCCACGCTCAGGTCCAAGGCGGTGTGGGCGTGACGCCCCTCATGAAGCGGCCCCGGCTGGGCCCCGGAGCCCGAGTGAAGGGTCAGGATGAGCTGTGTGTGGTATGTGGAGACAGAGCTTCAGGATATCACTACAACGCTCTGACCTGTGAAGGCTGCAAAGGTTTCTTCAGACGCAGTGTAACGAAGAAGGCCGTGTACCGCTGTAAGAGCGGCGGCGGCTGCGAGATGGACATGTACATGCGCCGCAAGTGCCAGGACTGCCGGCTGCGCAAATGCAGAGCTGTGGGGATGCTCGCCGAGTGTCTGCTGACGGAGGTGCAGTGTCAGTCGAAGCGATTGAGGAAGGGAGCCAAGCACCGAGGAGACTCGCTCTCTCGTCTGACTGCTGAGGACGAGGAGAACTCAGAGAGCAGGAACGTCTCGTCTACCAGCAGACTGCCTCCAACAACACGGGTTTCTTTGGGTCTTTCCAGAGAGCAGAAATGTGTTCTGAACAGAATCGTGGAAGCGTATCGGAGATACCGAGCTCACGACAGCCTACACTTCAGGGTTCCTCAGTGGTCAGGACTGGATGACGGTGGAGATCGTCTGGCTGATCTGACGCCTCTCCAGACAGAAAAGCTCCTGCAGTTCTCTAAGAGCGTACCAGgcTTTGAGCTCCTGGACGATGCTGATCAAAGCATTCTCCTGTCCTGCTCCTCCGTGGAGGTCATGTTCCTGCTCTCGGCTCAACAGTTTGCCGAGAATCCGTCCGCCTTCAGCGCAGCTCTGTATCCTGGAAGTTTATCGTCTGTATCTCCTCACTGCTGGATGAAAACTTCACAgtctaaaaacaacaacaacaacagcggCCATGAGGTCATACTAAACTCAGCAGGGTTGAGTGAGGAGCTCCTGGGACCAGTGCTAAATTTCTTCCACAGTATGGCCGCCATCGCTGTGACTGAGGCTGAATACGCTCTTCTCACTGCTACTGCCGTGCTCTGCTCAGACAGGCCCTCTCTTCGAGCGGTACGGTGTGTGGAGAACCTGCAGGAGTTTGTTCTGGATCTTCTCTCTAAGGTCTGCAGGAACGGCGATGGTGCCGCTGTGGGTCCGTGCCGCTTCGCCCGGCTGCTGGGCCGACTCACCGAGCTCAGGACGCTCCGCCACAACCACCTCACGCGCCTACCACAGCAACCCTGGGACCTGCAGCACTGAGAGACGCCCCTAGACCACAGAgaacagagagcagagagaggacTGGGTCATCTGGAAGGACTGATCTCACCTCCAGTGTTCATAAAACATAACAGAGTAGGATTACTGTGCTGTGTGCAGACTGTATACTgaaattaattcagtgttttttttttattattatagtgagaaataaaagaaagttaaggtttaaggtttagGATTAGCCGGTTTATCAGCAGGCTTCACTTTGTTTAGAATGACCAAGTTAAAACAGCTTTACTGAGCTGATCTACTGTTTAAAAGCTGATATAAGTAAGATTTaaggccctctctggtgagaatgggtaattgcactgagaatcatgcggaagaatcatttgaATCtgaaactgggcgggtgtggtGCCGCCTCCTTTCAGAgaggatgaatccgattccaggttatgttcagtcagagagagagagagaaagctcagtcagaaactttactctttca

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77018 lncRNA upstream 21802 37230990 ~ 37233036 (+) True G57088
TU76704 lncRNA upstream 379491 36807703 ~ 36875347 (+) True G56859
TU76709 lncRNA upstream 421792 36825767 ~ 36833046 (+) True G56863
TU76708 lncRNA upstream 425348 36827530 ~ 36829490 (+) True G56862
TU76698 lncRNA upstream 481967 36770816 ~ 36772871 (+) True G56853
TU77178 lncRNA downstream 109699 37388089 ~ 37391366 (+) True G57209
TU77182 lncRNA downstream 195606 37473996 ~ 37474778 (+) True G57212
TU77199 lncRNA downstream 198842 37477232 ~ 37548787 (+) True G57227
TU77201 lncRNA downstream 207981 37486371 ~ 37546259 (+) True G57229
TU77198 lncRNA downstream 269171 37547561 ~ 37548787 (+) False G57227
XM_022670608.1 mRNA upstream 3868 37240674 ~ 37250970 (+) True pqlc2
XM_022670607.1 mRNA upstream 3868 37242191 ~ 37250970 (+) False pqlc2
XM_022670609.1 mRNA upstream 3868 37242191 ~ 37250970 (+) False pqlc2
XM_007228907.3 mRNA upstream 17179 37191998 ~ 37237659 (+) True trim33
XM_015603147.2 mRNA upstream 17179 37191998 ~ 37237659 (+) False trim33
XM_007245860.3 mRNA downstream 514933 37793323 ~ 37800678 (+) True LOC103038870
XM_022670618.1 mRNA downstream 819164 38097554 ~ 38137323 (+) True LOC103037590
XM_022670619.1 mRNA downstream 896581 38174971 ~ 38205601 (+) True LOC111192680
XM_022670624.1 mRNA downstream 1830946 39109336 ~ 39153351 (+) True agtpbp1
XM_022670623.1 mRNA downstream 1833289 39111679 ~ 39153351 (+) False agtpbp1
TU76991 other upstream 249040 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 1291519 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 1830365 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 2015738 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 2503275 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 2766263 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 3321601 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 3396650 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 4096429 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 4159637 41438027 ~ 41438911 (+) True G58025

Expression Profile