RNA id: XM_022670629.1


Basic Information

Item Value
RNA id XM_022670629.1
length 3506
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC103031561
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39406665 ~ 39487936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCCTCAGTGTGatgctccctctctttcactcctcgCTTCGACCATCATCACTCCAGACTCTTATCCACTATGAGATTTAGAgagaaaacaaatcaaacaaccTTCGGAAACTTTCTCTCTGTTAGTTTTCATCAAGCCCCATCTTTACTGTAAGTGCGTAGTCTGTCTGCACCTGTCTCCTCCTCAACTGTGTGGTGGGACTGCGAGTGTATTATGTGTGTGAGTCcagacacacacatttctctaTTCTCTGGGCTTCTGCACGCTCCCCCCAGTCTCCTTGCTCCGGCGCTCCAGCAGCTCTCCTCCTCAGATGGACATAATCCTGCTCTCGCCGCTTCTTCTCATCTCTCCTGTTGGAGTGTGGCTGTCGCTGCTTTGTCCCGGAGCCCCCCCTGGCCTCAATGAGTGCAACTGAGGACTCCAGCTTTGTCCCTGGAAGATGGGAAATGCCTCGGAAACTGGCCGATTTGTTTCCACAATCCCCAAGGAGCATGACGTCTGCATGGGTGCCATATACACGACTTTCTGTGTGCTGTCTCTCTTGGGGAACGTCATTCTGCTTCTTGTAGCGTATCGAAAGAGGTCGTCCCTGAAGCCAGCCGAGTACTTCATTGTGAACTTGTCCATCAGCGACCTTGGAATGACTGTGACTCTTTTTCCTCTAGCTATTCCCTCAGCATTCGCTCACAAGTGGCTGTTTGGAGAGCTGACGTGTTTGTACTACGCTGTATGCGGTGTTCTGTTCGGCTTATGCAGCTTGACAAACCTCACTGTGCTATCCTCAGTCTGCTGCCTCAAAGTCTGCTTTCCTATCTATGGAAACAAATTCTCTTCATCTCATGCTTGTTTGATGATAGTGGGTGTATGGTGCTATGCTTCAGTGTTTGCTGTGGGACCCTTGGCACACTGGGGCCAGTATGGCCCTGAGCCTTATGGGACAGCATGCTGCATAGACTGGTATGCTCCCAAACGTGATGCACTAGCAATGTCCTACATCATCTGCCTCTTCCTCTTCTGCTATGTTGTCCCTTGTACCATCATCTTCCTCTCCTACGCCTTCATCCTACTCACTGTACGCGGCTCGCGGCAAGCGGTGCAACAACACGTCTCACCACAGACGAAGACGGCAAACGCACATTCACTTATTGTCAAGCTCTCTGTGGCAGTGTGTATTGGTTTTCTGAGTGCCTGGACCCCTTACACAATCGTCGCAATGTGGGCCGCATTTAGTGAATCCGAGTTGGTCCCACCCGTTGCCTTTGCCCTCGCTGCAATTTTTGCCAAATCCTCTACAATCTACAACCCTGTGGTGTACCTTCTGTTCAAACCCAACTTCCGGAAGTCTCTGAGCAGCGACACGGCTGTAATCCGCAGGAGAATATGCTCAAGCCCCTGCAAAGGAAGTCCTCTCCCCGACGAGAAGAATTCAAACCCACCAACATCTCAACGCTGCACCAACAGCAAGGACATTAACAACTCCACCCGCGTTTCCAACGGTCTTACAGAAAGCCACGGGGCGTGTCTTCACTGTGCCGAGGCGGAGTCTCACTGCCAGCAGCCTACGCTGCAAAGGACGGCCCGTGTGCTGACTGGCTCCACCCACAGCGAACTGACCGTGAGTCAGATGTCAGAAAAAATGCATGCTGACTTCTTATGAGCGTGCTGAAGACATGCTGGACGCATGCCAGGAAGAAACAGACGGATGGGAGGAAATTCAGTGTCTTGTTCGTCTTTCTTGCGCAGGACATGAAAGCAGAACATTATTTAGACAACGGACACAAACAGGAGAATAAAATGTGAGTTTCTTGATTCAGATGTTTGTGTTCATTCAGTGATGGCCTCTTGAGAGTGTCCCAGATCCAAGACTGTTCAAGTCAAGTGGACTGGACAGAAGGAGGTCGCTAGCGGCAACAGCATGTTCGAGGACACTCAGAAGTCAAGATGAAGAACAACTTTGTCATCTCAACCATATAAAACCATTGTACTAGTGAAACAAGACATGGTAAAATGTTCTGTGCATAAAAGGCCTGTTTGAGGTTCCAATATTCATTAGGGAtgaattaaaagaagaaaaacccTTTACAGATCTTTAACCCTTAGAAGTGAAGAGCTACAGTATAttcaaatataattaatattcactgtgtttaattaaatgaCAGCAACAGATGTACACAATCAGATCACAGTATTTTGACATCTTCTTTGTCTCTACACTCACTGTCCATTTTTGTTGGTCCCCCAAtacatataggagcactttgtagttcaataattacagactgtagtcatgTATCTGTTtcctgcatactttattattattatcctccttacaccctgttcttcaatggtcaggaacCCACAGacgagaccaccacagagctcATTCTTCCCTTGCTGTTGCTTGTGTGAACAAAGCTAGACAGAGATAAAGCTAACAGGAACTTCAACAAGAATCAAGAGCTTTGTAAAATACCTGGTTCATTGACTATTgactcagtccagcagtgacacttttaggtgtttaaaaactccagcagcactgctgtatctgatccactcttcccagcacaacacacactattacactaccaccatgtctgtgtcactgcagtgctgagaatgattgCCACCCAAGAAATGCTCTAAGGTGGCCCTGTGGGGTCCTAACCATAAAAAACAGGATGATAAAGTGTGCAGACTACACACCCTGTAGTTCCAGAACTACAAAATGCTCATACAGGGTCAATAAAgctgataaaaataaaactgagtGTACAAACATGGTGATGGCCAAAATATTGTGACATGACTGTATTTTAACAGTACTTTACAAAGGTATTAGGCaccttaaaaatagaaatagaaatccTTACCTAGGcagtaattttaatttattattatctaaATCCACCCAACAGTaagctggtttggtaaatcagtgcTTATTGATATTAAATCAGATGAGGATGAGCTGGTGATTGTACTTATCCTAGATGTTCATGGGACATTCAGGAGATTTTTTCTCCAAACTAGCTCAAACGATCTTACCTACTTTcttcagaattaaaaaaaaaaaaaacaagaatttcttgttcattttttttactgtgtttgtgtttacctgtatttgttttaatggAATCTGATGTCTTTCCCCGCAAACCCACTCTTATCACTGAgataactgattaaaaaaaaatgtttacactcTACCAAACAAAAATGCTTCCACATACaaccattttaaaaaagaaaatattatatataaagaaatcaatGTAAATGTTTACGTTTCTCAATGTATCACTTCACACTTTCACAAAAATGATTTTGTATGAAACCAAAGTCTTCTTTtatggcatcactcaaagaGCCCTctgtattatctttatttttgagaGTGTAGCTGCCTAAACCCTCCAGATATCACTGCATACCTGATTAACATGGCTTAGCTCTCATTTGGCACAAAATAGATTTTGTCATAAATGTGAATAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77495 lncRNA upstream 29604 39374000 ~ 39377061 (+) True G57473
TU77476 lncRNA upstream 36080 39365656 ~ 39370585 (+) True frmd3
TU77473 lncRNA upstream 142690 39263171 ~ 39263975 (+) True G57457
TU77441 lncRNA upstream 253189 39109244 ~ 39153476 (+) False agtpbp1
TU77434 lncRNA upstream 309242 39095337 ~ 39097423 (+) True G57427
TU77523 lncRNA downstream 9092 39497028 ~ 39497353 (+) True G57498
TU77532 lncRNA downstream 72492 39560428 ~ 39562898 (+) True G57505
TU77572 lncRNA downstream 238765 39726701 ~ 39730031 (+) True G57538
TU77576 lncRNA downstream 249624 39737560 ~ 39749700 (+) True G57542
TU77690 lncRNA downstream 317342 39805278 ~ 39810668 (+) True G57636
XM_007237429.3 mRNA upstream 40845 39292071 ~ 39365820 (+) False frmd3
XM_007237428.3 mRNA upstream 40845 39292072 ~ 39365820 (+) False frmd3
XM_022670628.1 mRNA upstream 40845 39304664 ~ 39365820 (+) False frmd3
XM_007237427.3 mRNA upstream 118858 39278427 ~ 39287807 (+) False gkap1
XM_022670627.1 mRNA upstream 118858 39278543 ~ 39287807 (+) True gkap1
XM_007238046.3 mRNA downstream 36679 39524615 ~ 39528505 (+) True LOC103032512
XM_022670630.1 mRNA downstream 41679 39529615 ~ 39540542 (+) True LOC103030832
XM_022670631.1 mRNA downstream 41680 39529616 ~ 39540542 (+) False LOC103030832
XM_007238037.2 mRNA downstream 53792 39541728 ~ 39560277 (+) False LOC103029767
XM_007238036.2 mRNA downstream 53793 39541729 ~ 39560277 (+) True LOC103029767
TU76991 other upstream 2400867 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3443346 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 3982192 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4167565 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 4655102 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 556717 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 1112055 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 1187104 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 1886883 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 1950091 41438027 ~ 41438911 (+) True G58025

Expression Profile