RNA id: XM_022670630.1


Basic Information

Item Value
RNA id XM_022670630.1
length 2627
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC103030832
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39529615 ~ 39540542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGACTGAGCTCCTCTCTCTTATTTAGAGGGCAGTGTTTGACATGGTGACTAACCCTGTAAGAGAAGGTGAACTTTATGTTCAACATAAACTGAAACGAACTGTGGAGAATCCAGCTCTGTTTCAATAGAAAACTCTCTGTAAACAGAGTAGGGATTTAATTCAGTTAATCAGGATCTGACCTCGCGCCCGGAGCGGCGGCGGGATGCACGAGCTGCAGCTGGTAACCGGTCACTGTGTTAACTCACCTGGCTAACCTGTCGGGACAAAAAATACAGCTGGAAGGTGTACAAATTATCCACAAGGAGCAAGAGCAGTGAGAATATCTCCTGCCTCTCAAGATGGAGTTCTTCACTCACCTTTTCACCTCCAAACGAGGGTCCCTAGCAAGAATCTGGCTTGCAGCCCATTGGGAAAAGAAGATAACCAAAGCCCATGTATTTGAGTGCAACCTAGAGAATACTGTCAACGATATCATTTCTCCTCAGGTAACAATTGGTCTGCGGACTTCAGGTCATCTGCTCTTGGGTGTTGTGCGGATCTATTCTAGGAAAGCCAAGTATCTCCTTGCTGACTGCAATGATGCTGTGGTTAAAATCAAAGTTGCTTTTCGACCAGGACAGACTGATCTGCCTAATGAAGGGATGGAGGCTATGTTTAAGGCCATTACCCTGCCAGAGGAATTTTCTGACTTTGATTTACAGCTACCTGATCTCAAcacCATTGACATTGTAGATCACTTCTCATTGAATCAGTGTCGCACAGAGGAAATAACTCTTAAAGAAAACTTTGGGAACAGTTTTCTCTCTATGGATGATATGGGAGATGATGCCCAGTCTCATCAGGGTCTGTTTGATATGAGTTTAAACACTCTTGGTACAACTGGTGACGGTTTTGGTGATGAGGGGATGGCTTTTGATCTTGTTGATTTCATCATGAATGCAAATGAGAATTCTCTGTTGAATGACTCAGAGGACAATTTGTCTAATGAGCTCCCGGCAACACCCCCACCAACTGCTATCAATTCCACAGTGCAAGAGCCTGCCGTTCTAATTCCTTTgacagaaacacctaccatgaATGAGACAACACTTCTGGACAACACAAATGAAGGATTTGCACTCGAACCGGTGGCAGCCACACCTACTTCCGAAAGGAAGAGGGGCAGCAGAAAGAGGAAGCTGGTAGTGGATCAGTCTAAGGAGCTTTCTAATGAAGCTATCAGAGCCCAGCTAGCCAACACCTCGGACATCTTGACTTCGCTGGACATTGCACCACCTACACGCCAACTCATGGACTGGAAGGAGAAAGGAGGAGTGGATTATCTGTTCTCACATTTCTGTGTTCCAGTCATACACACTGGCTTACAGAAGCTGATCCTCAGAGATGTGTTTCCTGGGAGACGGGGGGCAACTGGCAAAGCAGAGGAGGAGCAAAACCCAGAGGAGATGAGGGAGCAGGGGAGAGAGGCTGACACTGAGAACAATATTTTGCTTACGGTGGAGGAGTTAAGCTTATTGCAGGAGACTATGGATCCAGACAGAGTACCAGAAGCAGGCAGCTTTATAGAGCCCTCTATCACCCACTTAGAGCCTCCGCAGTCCTGGAACAATGCCAGTGACGAGAGCCGGTTGGAGGTGTCATATCCTGAGCCACTCTCTGATGAATCCATGCTGGCACATCCATATGGAGTGTCGAGGGAAACCCCACAAACACAAGTGCAAACACAGCAGTCTGCTTCAGACACCCAAgacagagaggagaagagaatgACCAGTCGTGCCAAGAATCTCCTCCAGGCCCTTAGAAATCAGGACAGCAGTCCCGAAGCCGTGTTCAGTTTTCACGCTCTTGCTGAAGGAAGCAATCGCTCCAGAGCAGCAGCAATCTTATTCTGTCTTTTGGTGCTAAAGAAACAACAGGCCCTTGAACTGCACCAAAGAGCTCCCTACAGTGACATAATCGCCACACCAGGACCTCTTTTTCACAAGTTATAGgacagtttatagtttatagactCTTTATATTTGGGGATTGACTAAGCACTAAAGATCTGGACCTTTGAAGACCTGGTCTAAAGGTCAGTATAAATTATATGAAATgtattttcatcattttttggACTTAACTTCTGACACTTGTAGCATGCTGCCATACCTAGCAGTGAATTTCACACAATGATTTGTGCAACTAGGCCACACATTGACACGCATAACATGGAAAAAACAGAACCTACATGACAAATGAAATGGGTTTATTTAGACTTAGGTTTTGCATTACTGCTTTTGCATTCTTTAATACCTAAAATTCTTCCAGATATATAAAGAGAAATTGAGTGTGTTTGAACAACACTGTTCTGTGTGAAAGGTGTTTGGAATTTTCTCTTCACATTTTATTACCAAGAGTTCTGTTGGGTTATATATGACTCCatgagtttttaaaaaataagttaaatatttaaacatgtatGTTTCAGTTTGTTCTCTGTCATGGAGCTGTTTTTTATGCAGTGTGCTTGTTGTTTAATATTCTATGAATTTAATTACTTTGTATTTAAGATTATTCTACctgttaatgttaaaatgtttttcttgtttatcaaaataagtaatatatttttaaaagcag

Function

GO: NA

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77523 lncRNA upstream 32262 39497028 ~ 39497353 (+) True G57498
TU77495 lncRNA upstream 152554 39374000 ~ 39377061 (+) True G57473
TU77476 lncRNA upstream 159030 39365656 ~ 39370585 (+) True frmd3
TU77473 lncRNA upstream 265640 39263171 ~ 39263975 (+) True G57457
TU77441 lncRNA upstream 376139 39109244 ~ 39153476 (+) False agtpbp1
TU77532 lncRNA downstream 19886 39560428 ~ 39562898 (+) True G57505
TU77572 lncRNA downstream 186159 39726701 ~ 39730031 (+) True G57538
TU77576 lncRNA downstream 197018 39737560 ~ 39749700 (+) True G57542
TU77690 lncRNA downstream 264736 39805278 ~ 39810668 (+) True G57636
TU77693 lncRNA downstream 271693 39812235 ~ 39812766 (+) True G57638
XM_007238046.3 mRNA upstream 1110 39524615 ~ 39528505 (+) True LOC103032512
XM_022670629.1 mRNA upstream 41679 39406665 ~ 39487936 (+) True LOC103031561
XM_007237429.3 mRNA upstream 163795 39292071 ~ 39365820 (+) False frmd3
XM_007237428.3 mRNA upstream 163795 39292072 ~ 39365820 (+) False frmd3
XM_022670628.1 mRNA upstream 163795 39304664 ~ 39365820 (+) False frmd3
XM_007238037.2 mRNA downstream 1186 39541728 ~ 39560277 (+) False LOC103029767
XM_007238036.2 mRNA downstream 1187 39541729 ~ 39560277 (+) True LOC103029767
XM_022670640.1 mRNA downstream 282301 39822843 ~ 39829393 (+) True pqbp1
XM_022670647.1 mRNA downstream 302769 39843311 ~ 39961259 (+) True LOC103038904
XM_022670648.1 mRNA downstream 303637 39844179 ~ 39955823 (+) False LOC103038904
TU76991 other upstream 2523817 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3566296 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 4105142 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4290515 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 4778052 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 504111 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 1059449 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 1134498 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 1834277 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 1897485 41438027 ~ 41438911 (+) True G58025

Expression Profile