RNA id: XM_022670640.1


Basic Information

Item Value
RNA id XM_022670640.1
length 1428
RNA type mRNA
GC content 0.46
exon number 7
gene id pqbp1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39822843 ~ 39829393 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATCCCACTGGGACCACAAGGGGGAGGAGCGTGACGTCATTTTTCTGCGCCGACTGAAGCTGGTAGCTGCTGTGAATGAAAAGTTAGCAGCGCGCGGCTGTTATTAAGATGCCTCTGCCACCAGCTCTTCTGGCTCGTCTGGCCAAGAGAGGAATCCTAAAGCAGTCAGAACATGACAATGAAGAGGAAATCATTGCTGAAGACTATGACGACAACAATGTAGACTATGAAGCTACAAGGGTTGAAAATTTACCCACCAACTGGTACAAAGTACTGGACCCTACCTGtgGTCTCCCATACTACTGGAACGTAGAGACAGACTTGGTGTCCTGGTTGTCTCCCAATGACCCTGCTGCGCTCATCACTAAAGCAGCCAAGAAGCAGAGAGTGGAGATTGTAGATGATCGAGAAGAAGGTCACCACGAGAAGtcagagagggagcgagagcgTGAccgagaacgagagagagagcgagagcgggATCGGGACAGAGAGCGGGAGCGAGAGAGGGATGATGGacgggacagagagagagaaagggacagGGATCGAGACCGAGATCGAGAAAGAGATCGACGAACGAGGAGAGAAGACAGCGGCCCGTATAACAAGTCAAAGAGAGGTGGAAGCCGGAAGCAGGAAGAGATGGATCCTATGGATCCCAGTGCCTACTCAGATGCTCCAAGGGGCTCATGGTCCACTGGCCTGCCTAAGCGCAATGAAGCCAAAACCGGAGCAGACACCACAGCAGCAGGACCTCTGTTCCAGCAGAGGCCGTACCCCAGCCCGGGAGCAGTGCTGAGGGCTAACGCTGAGCTCACCAGACGCctagaggaggaagaggaggatgacgATGACTAAGCAAGAAAGCAGCCTCCTATAGAGCCTTTATAAAATGGAATGCAGGGACAGAACACACCTAgtattttaaaactatataGGCAGCTATAGTAATTCCTGCTCACTTTTTTCACTCTTGCTGATGATAAATATTTCTAAGTTAAACTCAGCCAGTCATTTCTCTCCTTTATCCACTTTTCTTGTAAAGCTTTAGATTAAAGCCTTTACCGGACAGGAATATCTAATCAAGGGCTTTTTATGAACCGTTATTGATTGAATTAAGCCTATTTGGGGTTAATAAAACCACAGCGGAGGTCATAAAATTGCGTTCTGTTCTTTAAAGTGCTGAACAAAGGTTTATAAAGGCTCTATGGGATTTCTTGCCATCTCTTCATTAACAAGGCACAAGTACAGTGGTATCCgtgtgcatgtttttttatggttcCTAGTTGTCATTTGTAAATATACTTATGTATTATACATTTTGTAGTACAACAgtactgtgttttatttgaaCTGAAAGATCTGGAGATTGTTGTAAAAAGGAAGTGTTTTATTTCCTGCTGGATTAAACCTTTTTGAATAATA

Function

GO: NA

KEGG:

id description
K12865 PQBP1, NPW38; polyglutamine-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77696 lncRNA upstream 7797 39814686 ~ 39815046 (+) True G57640
TU77694 lncRNA upstream 9296 39812583 ~ 39813547 (+) False G57638
TU77693 lncRNA upstream 10077 39812235 ~ 39812766 (+) True G57638
TU77690 lncRNA upstream 12175 39805278 ~ 39810668 (+) True G57636
TU77576 lncRNA upstream 73143 39737560 ~ 39749700 (+) True G57542
TU77703 lncRNA downstream 1278 39830671 ~ 39831697 (+) True G57647
TU77702 lncRNA downstream 4484 39833877 ~ 39841930 (+) True G57646
TU77721 lncRNA downstream 113509 39942902 ~ 39974443 (+) True G57658
TU77725 lncRNA downstream 157448 39986841 ~ 40090259 (+) False LOC103039219
TU77856 lncRNA downstream 333653 40163046 ~ 40164251 (+) True G57749
XM_007238037.2 mRNA upstream 262566 39541728 ~ 39560277 (+) False LOC103029767
XM_007238036.2 mRNA upstream 262566 39541729 ~ 39560277 (+) True LOC103029767
XM_022670630.1 mRNA upstream 282301 39529615 ~ 39540542 (+) True LOC103030832
XM_022670631.1 mRNA upstream 282301 39529616 ~ 39540542 (+) False LOC103030832
XM_007238046.3 mRNA upstream 294338 39524615 ~ 39528505 (+) True LOC103032512
XM_022670647.1 mRNA downstream 13918 39843311 ~ 39961259 (+) True LOC103038904
XM_022670648.1 mRNA downstream 14786 39844179 ~ 39955823 (+) False LOC103038904
XM_022670649.1 mRNA downstream 14786 39844179 ~ 39955755 (+) False LOC103038904
XM_022670643.1 mRNA downstream 14788 39844181 ~ 39961259 (+) False LOC103038904
XM_022670644.1 mRNA downstream 14788 39844181 ~ 39961259 (+) False LOC103038904
TU76991 other upstream 2817045 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3859524 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 4398370 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4583743 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 5071280 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 215260 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 770598 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 845647 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 1545426 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 1608634 41438027 ~ 41438911 (+) True G58025

Expression Profile