RNA id: XM_022670643.1


Basic Information

Item Value
RNA id XM_022670643.1
length 9204
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC103038904
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39843311 ~ 39961259 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGTGCTCAGCTGGCCAGCGTCCCTCGCGCATCTCGCTCTCCGCACGCGCTCGCTCGCgcgcactcactctctcactgacACGCAGCGTGAGCGAGCGACCGACCGCTCACTTCTATGGCGGTTAAAAGTTATCCACGGTCGTTTCCAGCAGACCGCCGCTGACCAGCGTTTTGTAGCGAAGACTTCTCGTGATTTTTAGGCGTTTTCTTCGACACAAACCCGATTTTCCCCCTTTTTGACCGCTTAGGGGTCAAGTCTAGTTCGGGGTCGATGTATATAGACGCGTTTAAACGGGCTCTTTTTCAACGGCTGAGCTGCCTgaggagaatgtgtgtgtgccagAGGCCATGCAGTTCGTCAGCCATGTCTAAGGTGGCTGTGAAGAAGCTGCACTGGCGCTCCAAAGTGCAAGAGAACTTTGTGCCCCTGGTGGGCAGCTCTGGAGAACTGGGCGTGGCCATAGGGGGCGGCGCAGACTATGGGGAATTCCCATTCGTCACGGCTGCCCCGGGTGGTGGGATCACAGTCGGCGATGTCATCTTGGAAATTGGTGGGACCCCTGTTTTGGGGATGACTTTAGGTGACGTTCGTGGAGTGCTCAACTCTTGTCCCCATCCCATTCGCATCAAGACCGTCCCACCaggTGTAGCACTGTGCAAGGATCTGAGGTTATATCTGAGCAAGTGTTTCACGCCTGGTTCTATGGACAGTCAACTTCAGCAAGTCATACGAGAAAATCTTTACCTGCGCGCTGTTCCCtGTACAACCAGACAGCCTCGAGACGGGGAGATCTCAGGAGTGGATTACAACTTCGTGTCTGTCGAGGAGTTCTTCTCTCTAGAGGAGTCAGGAGCTCTGTTGGAGAGTGGCAAGTTGAAAGGAAACTATTACGGAACACCTCGACCAGTCCACATTGGTCCCGAGAGTCCCCCAATCACCTACCAAGAGCACCGGAACCTGCTGAGGAAGTTTCGGACGCGCTGCAAGTCCCTCAGTAATCTGGAGAAAACAGCTGAGGAAGGCTACAACAGTGAGGAGGACTCCGGTCTCTCAGGTGTTTTAGGCGGCTCTGGAGGTGCTAGCAGTGTCCCCGCCCCCACATTATCCCCCAGCCAATCGCGTGACTCCAGCGGTGGGGACGGCAGTGCCTTGGAGAATGGCGGTGGACCTGGCAGACGGCGACGGGGGGCGGGGTTTGAAACCTGGGAGATGAACTACAGTGACTCAGGGGAACCATATTATACAGATCATCAGCCCAAGCCGGCATCCTGGCACAGCCGCCGCACTTCAAGCAGAGAGACGGTCTGCATGACTGAATTGTGGGAGTTCACTGATCAGCCAGAGGAGTTAAGAGGTTACTCAATCCACACTCGGCTCTCTAAGGGTTCTCGTGGCTTTGGCTTTAACATCGTAGGGGGCAGCAGACCCGGTGAATTCCTACAGGTCTACAGCATTACACCTGGAGGACCACACACTCTCAACTCGGCTGACATCCTGGTGTACATCGGTGACTCTTGTGTGCTGGGCATTTCTCACAAAGAAGTAGTGGAGCTGCTGAAGTCTGTCCCGGTGGGCCATAGTGTAGATGTTGTGGTACAAAGAGGCTACCCAATGCTGTACAATCCAGATGGCTGCCCCAAACAACGCCGCCCTGGGCTACTGAACACCCGGGACACTGCTTTAAAACCTCcagctccacctccacctccacccactACTACCCAGCCACAGCCCCAGGCTCCACTACCAACTCAAGCACTGCTCAACCTAAACGGAATGACGTCCAGCGCTGAGGAGAGGTATTCTCGAGCGCTCGGAGGAAGGGCTTCCAGGTTTAGTCTGGACGCCAACGGCAACACGTCCCATTTTTCTCCACCACCAAGAACCCCTCCTTATTACGAGTACTCCAACGGGAGTGAGAGCGGATACTTGAGGCCGCCTCGGTCCACAAGGGGCATCAGGAGGCTGCTAAGCGCAGACTTGGCCAGCCAGAGCGACAGTGAGGTTGTGTCAGCAATAGGATCACACAGGGCCTCTCTAATCCGAAACCACAACAATAACTCCCTCTGCCCTCCATCGCCTTTACGCCTATACTCCACCAAGTCCTCTGAAAGTGACCTCTCTTCTTTTGCCCCGACCCCGCCCACCTCTCGCTCACCCCTCCGTCACACAGACACCGGCTCTGCACTCATCTCCTCCTCTCCAGAGGGAGGGCGGCGATACTCACAGTTCCGGAAGCCCCAGCGCCCCCTGCTCACCCCTCCCCCCAGCTCCCACTCAGACGGCCCGTACTTCACCTTCAACAGCGGTGCCAGTGCCAGCAGTGGCAGCCCTGGCAGCAGCATCCCGTCGCCAGGGGCAACAACTGGTGGCGGTGGAGGCAGGGGCAGACCTGGGGGTAAAGAGCTGGTGCCGGTCGCCCTGGCCAAGTGTGAGGAGGGCAGAGGGTTGGGATTTAGCATTATGGGGGGCGGGCATGCAGGGAGGGTAACAATGGTGAAGAGAGTGTTCGACCGGCAGCAGTGTAACAGCCTTCAACCTGGAGACATCATTGTAAAGATCAATGGAGCCGATGTGCAAAGCCTCAGCTTCTCTCAGgttcAGCGTATTCTACAGGAACACACCAAAATGGGAGAGGTCATTCTGCTGGTTCAGAGAGGAGGCTCCTTACATTCCCCCATCATACCAAATTCTACACGTCAACATCAGTCCAACTCCATGCCACCGCGCCCTGCTTCTGCCACGCAACTTCGTCCTACCGACAGTCCACCTCTGCCACGGAACTCCCTAACCCCGCCTCCTCAAACTCTGGTGCGCTCCTCACTGGTCCAGAGCACCAGCTTCTTAGACTCGATACCCGTCACTCTGACATTAGAGCCGCGAGACTGGATGAGCTCTGAGGATGGTGGGACTGCACTCAGCCCCAGAGTGAGGACTGAAGAGAAGGTTCGGCCTCCTGCGCCACGTGGGTTTGAGGTGGAGCTGAAGAGGAAGCCAGGAGAAGGGTTCGGATTTGTTATTGCATCGCAGGATGTGGAAAATGGGAAAGCGGCATCTCTGCTGCCCCATCGCTTTGTGACAGTTCGTCGGGGCAGTCCTGCAGCCCGAAGTGGGCAGATCCGTCCAGGGGACCGTCTGGAGGCCGTAGAGGGGCGCAGTGTGGTCACCCTGCCCCACAGAGAGCTGGCTCAGATACTGCGCAGAGCCGGAAACACACTACGCCTTACTATTGTCCCACGCTCCAGTGCTAACTCTTCCGATCACTCAGACTACGATGCCAATTACAAAAGCCGGAAGTCTCAAAGGCTTAAACAAAAGCAGGACTCTTCACGGTACTACAGTGTGGATCTGGAAAGGGGACCCACCGGATTTGGCTTCAGCCTGAGAGGTGGGATTGAGTATAACATGGGCCTGTATGTTCTTGGCCTGATGGAGGGAGGACCGGCCTCACGCAGTCGCAAgattcagGTGAGTGACCAGTTAGTGGAGATCAATGGCCAAATCACAACAGGAATGACTCACAGTCAAGCTGTAGAGCAGATCAGGACTGCAGGCCAAAGGATCCATCTCGTCCTGAAGAAGGGCAACGGATATGTTCCTGACTACGGCCGTGATCACAGAGCAGCCGTCTCCTCCCTGCCCCCGGCCCTGCAGCCGCATCTGGCTGCAGTGAACCACCGCCGCGTGGATGACACACCAAGTCCTCCAAGAGCAGCCAGGAGCCGCAGCCAGGGTGGGAGGACAGTGCGGCAGGAACTGGGGTCGGACCAGGGAGGGGAGGAGAGCCCTGACAGCCTAGAGGGCCACGATAGAAGATCAAAggacaggaggaggaggagccgaGGCTCACAGAGCTTATCCCGAAACAGGCTGAGAGACGTTAGGAGAaatgatgaagatgaggaagagaaGGAGTATAGACCATTGGAGAGAGTAAAGGACAGGAGGAGAGACAGGGTacagaagaaggagaagaggaGTAAAAATAAGGATAGTGGGCAAAAactaaacagacagagagaaagaaaggctgagaaagaggaagagcaTCAAGGAGAGACCTATAATCTCCCCATCCCTAAGCAGAGATCACAAAGTGAACACTGGGAGGAGGAGATTGAGAcaggagaagaggaggatggGCCATTTctcagagaaggagagagagagggcaagatggagagcaagagagacagcGGACGAAAGCTGGAGGGCGAGTTGGACAGCCACACAGCGCGAGTGACAGAGAACGAGTGGGGGAAGGAGAGAGTGCGGAAACATAAAGCAGATACCAGGCCTTACAGCGCTCAGCAATCCAGCCTCGGCACCCCAGACAACAGCCTGTCCTCGTGGGAACCCCAAGGGGACTCTAGATCCCGACGGGCTCCTTTCTCCTTCCTCATGTCCCCTGAGCCAGAATACACAGATTCTGAGTCTGAAGCCAGTGTTTCTGATGATAGTGTTTTTGCCTCCAGTTACTCTGGCCTCTCTGTGTATTTGAACGAGGACTACAGTTCAGGGGCCTCAAGTGATTTATTGCCAGGCCCCTGGTTCAAGCCCAGCCCAAACACTCTCAGCAGAGTAGTGGAGAGGAACAGATTGATGGACAGTGGAAGTAGAGAAAGGAGAAGACAGAACTCTATCTCCTGATGTGCTGTTTTTGGTAATTTAATGCCATGTCATGTTAGGTGTCAAAGAAAGCCTTTTTTGGACTGGATTAATTTTACCCCTGAAGAGAACTGCAGTGGGAGTGCCACTAGAATATGATAATTTGTAATATAATGTCTATAGAACTTTGTAATATAATGTCTATAGATCTCTAGATTTTTGGAGGAAGGTTGACATACTAAAACAatttaaactgaactaaaactgTACTGTAAGTTGAATTAATTTCTAACTGGGCTCACCAGTGGCTCAGCAGACTATGACCCAAGGATTACAAGTTTGATTCCCAATCATGCAACTTTGCCATCAGTAGCCAGAGTTCAAAGGAGCAATATAATAGTCTTTCTAGAAGGATAGACAGTGATCTCAGACAGTGAGTTGTTGGCTGACACAGACATCTTTTAGCTTATGTATCATAGCTGGGGACACGTCGCTTTTTTTCCAAGCTGCCTTATGATGCTGCACTGgcggcagtttgaaaagagtctatggctgacttcatatgtatatGTAGAAGGAGTGGGCATGTCCTCACCCTCTCTCAGTCCTACTGAGAAAGTGGATTATTTGGCTATAATCAAATATTATTTCTATTGGCTATGACCTTTCAGTTTGTagtcataaaaaaatgaaaaaggtacTTTTTTCATGGATAAATCATTTCATTAAATCCCattcaaattacattttacaaccTCCTCTAGTCTTTGTTCCttctaaggtttcttcctcttagtaTGAGAGAGTTCCTTTCCACTGTTGCTGCCACAACCTTGCCACTACTGGCATCACTGTAGTGCTTTCTCATAAGAGGCTCGTACCGGTTTCtcagtaaagctgctttgtgacaacatttgaattgaattgcatTGAATTCTCTAGTAAAACTAATCCAGCTCCAATAGTGCTTTTTGTATGCATAAACATGACAACATTTGGTATCTTAAATCTGAGGTTATTTTTCATATTCGGGCAATACTTTATCATAAGCTAAATACAGAGAATATGCAGTGTTCATATTAAAAAGGtgagacagaaaataaaatattgtcttaattctctactctctctctctcttctactctctatctcttcctgtttttctgtttctctcagtcACTACCTTTTCTTCTTCAGAGGagagttttttagttttctgtTACTATGTTTAATGTTCCTATTGTTTGCCTGTTTCTTGTTCTGTTGAGTTCAGGTGCAGTGTCGCCTGCTTATTCATCTCACCTCAGCTCTCTCTTACCTTTCTCacctctttttcattttctgaaatCTCCTGAAGCTTGTTAAAAGAGATACTAAATGATGAAGAAATATTTGTCATAGAATGTAGAGTGAGCTTAAAGCAATAACATGCCTGAACCCAAAACGTATTTTTGAtacatatatgaaatatatctgAAATATATCTACGTTTGCCAATTACAAAGAGTATAACACTTAACCCACAATAACTTATTGTACCCTTGTTTCTTGGAGCTCTTCATTCAGATATAAAAGCATTTACTGGGTTTGGGGACCCTGAGTTACATTGTTGTATACTGAAaatgtatatgaatatataGAGTTGAATAGATTTACTGTGTATACAATCATATATATTTCGAAGGACTGTGATAAGTGCTCTATAATATTTAGTTTGAACCCGAGTCCAACAGGTTTTAAGGCCTCTAAGTGCCCCTAACAGTTGCCTTGCTCAGTGAAACCTTGTCCTATTCGTTACCCTTAGTGGACCCTGTTTGGGAGAAGTTGTATATGAAGTGTACGAATGACTGAAGAATGACTGACCAGATAAATGAGGTTAGGCAGAAGTGAACTGAAGGGTTTAATGAGCACATGAGATGGAGtcccaaacacacatatacacacacacacacacacacgttcataAGCATTATCTAGCTTGTCTAAACATGCCTCCATTACAATAAAATGGGTAAGCTGCTGGTGAAATTGAACAAGTCCATAGAGTGGCTGGAATTCACAGAGAGCTCAGCCACCATATCTGTGAACTTCAAATATCTTGAACCAACACATCTGCTACATTAACTAACCAGCAAAACATTCtccattttactgtttttatttatttgtatttatagtaTGCAGTGCTAACTGTTTTGACTACGCAAGACTTGCACAGTACTGTTAATCGGGAGTACTGTACAGAACATTGTTATTGGTTGCAGAAATAGTCATTCTGAAGGCTTTACTATAGGCGTTTTGTGGCCAAACTACTGCAGCCTATGTTTTGCGTTAACATTCTTAAACCTTCAGAATGTCTCCAGTATCCTCTAGACCAGTGATGCATAAATACCATTATTTAACCAATTTTTGCATTTGCCGATACCAATGCCAACACCTACTTAAAATTAGGCAATCAGGAGCATTATGTAAGAGTGTAGTTGTCAGAGTAAAGTAGTAAAGTGCAAAAgttaatttgttcattttaagttttgttatataaacatttttttaaacaagtatatttttaagaacTAAGATTAGTTTTACACTATGtacgtatgttttttttatggatcAATGTTTATTATCCTAGCGTGATTATGTTATGTCAGGACCACACCAGCCTATTTGATGGTACTTTCGGGAACAAAAGGAAGTAAATAGGAGGGGGAAGGAGCTAAGAGGAGCAAGGCAGTGTTTTAAAGCAAGTTTCACCTGCTTGGACTTTTTTACCAGTGTTGTTTTACTACATGTAGACACTTTGCACTGGATGTATGAACTCTTTGATGTCAAGGTGGCTAGATGGTGTGCTTCATGAGTTCTGTCTTGCTAAGGGcggtttactctctctctcactctctctttttctctgtttcatgctctctctctctctttcacgcCCTCTCCCGTGCTCACGATCTGGGTATCGGATGTTCGTAGCAGTAACTTGTTTGCTATTACAAGTATGAGCAAATGGGCTTGGTATCAGGCCGATAAACTGTACCAGTATCGGTATTCATGCATCTCTACTCTAGACAGCACGCATCTTTATGCATTCTAAAGTTAAAGTGGTAAATTGGCTCAGCTAAATTGGGGATCGTATTCTGTAGTTAGATCCGAAACACATAAAATCATGTAAATGCTGTAATCTATCGTGAACAAGGTTATGCTCGATATTTGGTTAAACAATGTTGTAATTACATTGCAGTGCAACTGTGCTGTATATTAAGAAAATAATACTGCATTACTGGACAGAGTAAAGCAAAAATGTATGTCAGAGGGGTCCTGAGAGTTAGTTTGTGGGATTTTAATAGTACACTGGACATTTTTCACTCTGTTGTTTGAACACTGCTACAAAACAGAGCTCTGTGTTGTTATCAGGGCAGAGTTTCAGACTCTAGCCAGTGACAATAGCTTCACGATTTTAAGAGACATCAATGTTCATCTCCTTCCTTCCTGCTGAGTGTGACTTTCTGTGCTGGGTGTAAATCGTAGACTTTAGGTTTtagaatttagttttttgcctCTTACAACCAAAGACAGCAGAAAATCTTTGAAGCTGGAAACACAagtgagtgtgcatgtgtgagtgtctgtgttTGCAATATGTAGTGGCTTCAAGCTGTGAAAAGCGTCTTTAGGGAACCCTTCCAGAGATGACCTTTAGTCTCTATTGATGAAGAGCTTGTTGGCCAGAAATAAAACAAGTGAGAGTGTGCTCTGTGTTTGCGTCCTTACCTCATTAGGTGTGAACGATCAAGTAAGGGGACTGCAGATCGATATCCTGATCAACCTGCTGCTCAGCACTGATCCATTGCAGACCATTAACTGTCCTAACCAGTACCTTGGGAGAAATTATAAAATGGACATAAAGAAAATGCGTTATAAATGCGTTAAATGCAGGCTTCTTGTCtctaagttaaataaaaactgaagttATTTGTTAAAGGCCATGTTAAATGAATATTTGTAGCAAGTGTGGGCCCACATATGAGCCTTTGCAGTTGAAGGGGTTTAAATAACTAAGaggttattaaaataattttatactcAGTAATATTGTAGTGCCAGATATCAGATGACAACTATGTACTACTACAGGCCTGTATGATGTCACTATTTTAAACCACTCAGATAACATAAATACACTACATATTTTCCCAGCAGGTCTGGGGTAAGTTTCTGTGGCAGTCTAATGTGTGTGCTATATGTACTAGTATAGGGACaacatttttaaacctattGTGAACAAATGCCACATTAGtcaaaaatgcacattttagtttcttttcttccttttgcAGTATACTGTATGTGCAGTGTGAAATCAGATCGTCACGTTTTTTTCTGTAGTCATATATGGccatgtatttattgtaaataaatataaatatgaatgtttAAACAACTGTACAGTTTATTATTGACATGAAAACactatattgtttttttctgtttctgattATGTTGTTACGTTCAACTGTAACCCAAATGCAGGTAccagattatattatattaactaaTAAAGAGTTCATGTAACTACTGAAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77702 lncRNA upstream 2251 39833877 ~ 39841930 (+) True G57646
TU77703 lncRNA upstream 12484 39830671 ~ 39831697 (+) True G57647
TU77696 lncRNA upstream 29135 39814686 ~ 39815046 (+) True G57640
TU77694 lncRNA upstream 30634 39812583 ~ 39813547 (+) False G57638
TU77693 lncRNA upstream 31415 39812235 ~ 39812766 (+) True G57638
TU77725 lncRNA downstream 25582 39986841 ~ 40090259 (+) False LOC103039219
TU77856 lncRNA downstream 201787 40163046 ~ 40164251 (+) True G57749
TU77867 lncRNA downstream 217348 40178607 ~ 40179164 (+) True G57755
TU77878 lncRNA downstream 261846 40223105 ~ 40225655 (+) True G57763
TU77891 lncRNA downstream 331549 40292808 ~ 40300515 (+) True G57773
XM_022670640.1 mRNA upstream 14788 39822843 ~ 39829393 (+) True pqbp1
XM_007238037.2 mRNA upstream 283904 39541728 ~ 39560277 (+) False LOC103029767
XM_007238036.2 mRNA upstream 283904 39541729 ~ 39560277 (+) True LOC103029767
XM_022670630.1 mRNA upstream 303639 39529615 ~ 39540542 (+) True LOC103030832
XM_022670642.1 mRNA downstream 5831 39967090 ~ 40090271 (+) True LOC103039219
XM_007234626.3 mRNA downstream 135004 40096263 ~ 40125035 (+) True kdm5c
XM_007234627.3 mRNA downstream 135004 40096263 ~ 40125035 (+) False kdm5c
XM_007234628.3 mRNA downstream 182805 40144064 ~ 40150072 (+) True LOC103035670
XM_007234631.3 mRNA downstream 275783 40237042 ~ 40247286 (+) True LOC103036504
TU76991 other upstream 2838383 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3880862 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 4419708 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4605081 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 5092618 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 83394 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 638732 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 713781 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 1413560 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 1476768 41438027 ~ 41438911 (+) True G58025

Expression Profile