RNA id: XM_022670651.1


Basic Information

Item Value
RNA id XM_022670651.1
length 1531
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC111192685
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40150647 ~ 40160654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taactccAGGACCCCTTttagaaactaatcccgtccgaaAAGGGGCAGTTAAGAAAATGCTATGAAATGGGCTGAACgtaaaaaaacaaccaacagagcattGCGAtttgatggtgtttgttagTGTAACCATTGTCAATTTTTAGACTAAATGGACTTCACAGAGATATTTTACTCCAAAATAcgttggagcatttctattgattcattcataattaattttaacCCTATGTATTAAGTACACCTGCCAGATTTGCATTATGtcaaacagtaaaaacaatCCCAAAACAGGagatatatttaatttgtttgatGCAATACATTTTAGAAGCAGATAAGAACTATATGAGCAGATTTGCTGTGTGCTGTCACTCTTGTGACACAATTTTATCTGAGATAACAAATAAATCATGTGCGGTTCTGGCAGGCATTTGACCAGCAGATGAATTATAGATTTCCACTTAGGTGAAACTCAATCTCTCCactcctctcgctctctctctctctctctctctctctttgctttcATTGCTTTCATTGACGACCCCAAAACATTcactcatgcacacactcacacacacacacacacatgcacacctgACCTCCCGCAGAGTCCCAGCATGCAGCAGGAGCTGTGGCTGTGGGCCCAGTCTCAGCTGCTTGCTTCGCTGAACGCAGTGTGTGCCATGAGAGCGGCCGCCTCACACCCGCTGCCCACGCCCCCGTCCCAGCTCGAGCTGAAGCGTGCCCTGTCCGGCCCAGACGGGCCTGGCCAGACCCACAACGCACCAAACTCACCAAGACCAGGACACCTCAGGACCCGCACGGCCAACAACACGTTCAACAACAGCCCCGTGTTCCCACAGAACAGAGAAAATGCTGATAAGAACAGTGCTGGTGAAAGCCCCTGGAACCTGCACAACCCTGTGAAGGCCTCAAGGAGCCATCAGGAACTCCACAGAGAGCTCCTACTAGCCCACAAGAAGGAGGGCAGAGGGCTGGTAGTGTGCTGCAAGCCGGAGCTCCAGATGGTTCTGGAGAGGCGGAAGAGGGAGCAGACACAgaaggaggagggagagagggacagGAGCCCTCTGGAACAGGTCCTACTTAAAAGACAGCAGAAGCACGAGGAGGTGACGAAGGAGAAGGAGCAGGAAGAGAAGGTTCGTCAGGAGATTCAGCTTCTGGAGTTCGTCAGAGTGAGACAGAACTTGAGAAAAGTTCATACAGCTCTACACAAGAACATCAGCTCCTGAAGCTCTTCCACGGGAGAAGCTGGCTGTGACTGCATGAACAGAACACTGGAAACATGCAGAAGCCTCTTCAACCTTTTCTACAGAACCTTCAGTCACACTGACTGAGGAGGGGGTCATCGTTCTTTAATGCTGTGGTCACCCTGCTGGAAACCTTAGTGgctttcacactgttttctgCCTCTGTGTTTTTAGTTAATCAGAATCAGTTTAGAACATTCTACCCCTTCATTACTTTGTgttagaaataataaaacaagttcatataaaaGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77825 lncRNA downstream 25701 40121485 ~ 40124946 (-) True G57729
TU77786 lncRNA downstream 60396 40086074 ~ 40090251 (-) True G57704
TU77784 lncRNA downstream 61520 39987484 ~ 40089127 (-) False G57704
XR_002650085.1 lncRNA downstream 183327 39912120 ~ 39967320 (-) False LOC111192684
TU77855 lncRNA upstream 2292 40161527 ~ 40162104 (-) True G57748
TU77865 lncRNA upstream 3749 40162984 ~ 40164280 (-) True G57754
TU77866 lncRNA upstream 3781 40163016 ~ 40164280 (-) False G57754
TU77900 lncRNA upstream 96332 40255567 ~ 40255816 (-) True G57782
TU77910 lncRNA upstream 131742 40290977 ~ 40291186 (-) True G57788
XM_022670650.1 mRNA downstream 9652 40126214 ~ 40140995 (-) True renbp
XM_022670641.1 mRNA downstream 308701 39830654 ~ 39841946 (-) True gpkow
XM_007243218.3 mRNA downstream 329193 39815860 ~ 39821454 (-) True timm17b
XM_022670638.1 mRNA downstream 335626 39806607 ~ 39815021 (-) True praf2
XM_022670636.1 mRNA downstream 347995 39757462 ~ 39802652 (-) True LOC103034295
XM_022670929.1 mRNA upstream 6165 40165400 ~ 40179141 (-) True LOC103037008
XM_022670656.1 mRNA upstream 34258 40193493 ~ 40225510 (-) True LOC103039838
XM_022670663.1 mRNA upstream 132554 40291789 ~ 40304589 (-) False LOC103037644
XM_022670661.1 mRNA upstream 132554 40291789 ~ 40304589 (-) False LOC103037644
XM_022670662.1 mRNA upstream 132554 40291789 ~ 40304536 (-) False LOC103037644
TU77816 other downstream 31552 40117789 ~ 40119095 (-) True G57727
TU77631 other downstream 587756 39521544 ~ 39562891 (-) False LOC103030299
TU77868 other upstream 19460 40178695 ~ 40179066 (-) False LOC103037008
trnaw-cca_41 other upstream 446794 40606029 ~ 40606100 (-) True trnaw-cca_41
TU78238 other upstream 1236851 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 2943635 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 3523089 43682324 ~ 43682684 (-) True G58537

Expression Profile