RNA id: XM_022670662.1


Basic Information

Item Value
RNA id XM_022670662.1
length 2281
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC103037644
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40291789 ~ 40304589 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAGCGCATAGAAACaaagatcaacaatGGCTGACGACTTTGATATAGAAGCCATGCTTGAGGCTCCTTACAAGAAGGGTGACAGCAAGTCTTCTAGTGCAAATGGACATGATGAACACAGCAGAAAGAAAAGACGCAGCCGGAGCCCGAGCGCAGATCACCATAGGAGTAGGAGCAAGGACCGCAAGAAAAGCAAGGACCGCCGCAGGAGCCGCAGCCATGAGAAAAAGCGCTCACGCAGCAAAGAGCGTCGCCGCTCACGCTCCCGCAGTCATGAGCGTTATGGCAGAGGGTCGCAATATCGAGGTCGCAAAAGCCCCTACTTGGGGCCGAAATTTAACGGTGGTCCTGGAGGGAAGATTGGCCCACCCACCAAACTAAGccACAAACACAATCGAAGCAAAAGCCCCTTTAAAAAAGACAAGAGTCCTGTCAGGCAGCCCATTGATAATCTCAGTGCTGAAGAAAGAGATTCCCGTACAGTTTTCTGCATGCAGCTGGCTGCCAGAATTAGACCAAGAGACCTAGAGGAATTCTTCTCTGCTGTTGGAAAAGTGCGAGATGTGAGGATGATTTCAGACAGAAACTCTCGCAGGTCTAAGGGTATCGCTTATGTTGAATTTGTGGAAGCATCGTCTGTGCCGCTGGCAATTGGGCTTACAGGACAGAGGCTGCTGGGAGTGCCCATCATTGTTCAGGCCTCacagGCTGAAAAGAACAGGGCAGCAGCTGCCTTGCAAAACCTGCAGAAAGGTGGTGCAGGGCCTATGCGCCTCTACGTGGGATCTCTGCACTTTAACATCACTGAGGACATGCTCCGAGGCATCTTTGAGCCTTTTGGCAGGATCGAGAGCATCCAGTTGATGATGGACAGCGAGACGGGCAGGTCAAAAGGTTATGGCTTCATATCAtttGCAGATGCTGAATGTGCAAAGAAGGCCCTGGAACAGCTGAATGGCTTCGAGCTGGCTGGCCGGCCTATGAAAGTGGGGCACGTGACGGAACGCTCAGACGCCTCATCTGCCAGCTCCTTCCTAGATAATGATGAGCTGGAGAGAACAGGCATAGATTTGGGCACCACAGGCCGCCTGCAGCTTATGGCTCGACTTGCAGAAGgcACTGGGCTACAGATTCCTGCCGCTGCAAAGCAGGCCCTGCAGATGACCGGCTCTCTGCCATTCGGTAACCTGCCTGGAGCTAACCCTGCCCTGATCCCCAGCCCTAGCATGAACCAGGCAATGAACTTACCCACTCAACCACTGGCAACTCACTGCCTGCAGCTCTCCAACATGTTCAACCCGCAATCTGAAAACGAGCCTGGCTGGGACACAGAAATTCAGGATGACGTCATTGAAGAGTGCAATAAACACGGCGGGATTGTACACATATATGTGGACAGGAATTCTGCTCAAGGTAATGTATATGTGAAGTGTCCCACCATTCCTACTGCCATGGCTGCTGTCAGTGCCCTGCACGGACGATGGTTTGCAGGCAAAATGATCACTGCTGCCTATGTGCCCCTCCCCACCTATCACAAGCTGTTCCCAGATTCAGTGACTGCTACACAGTTGTTGATGCCCACACGTCGGTGATCCATCCTCCTTCTGCATCAATATCTCTCCCTCTTGCTTGCcctcatctctttctctgtatatcCTGGAGATGTAAATGACTCACTGTATGTGGTTTTCCCCCAGCACCTGCTAAATTTCAAACCTATTTAGACAGCTGCTGTGTGTCCCTGGAGAGCACATACACATTTGCCTCTGCATTTTAGGTAAGTGTGTAGAGAAGGGTTTGCTGATCCAGGTTTGTAAATGTCAGATGAAAATTGAAGTCTTAGTGGTCCATGCTGACTGACATTTGAAAGAGATGAGAGagcaacattttgtttttttaagtagctGTTCGTGTCTCCTTTTTAGTGCACATGCCTAGTGACCCAGAAGCTTGCTATCATGAAAAAGACTTTTCTATTTCTGTCTTTGTCCTGTAAAATACGCATGTTGTGGTCTCTAGactgatggattttttttgcaagGTTGGAGGAAAGAAACATGACTAAATTGATGAGACCTTCTGAGATCTCTCTTAGGTGTATGGAGAAGTCTGGGACCGCTTTACAATTTATAGCTTTTTGTAATCaaactttctttaattttgtaaagaaaaGGGTAATtaaaattgctttaaaaaatatgtcaAAGAACTTTGagatggtttttttttttttggtttgtttgttttataaaatgtaataaaacattttaacaaactGTG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77910 lncRNA downstream 603 40290977 ~ 40291186 (-) True G57788
TU77900 lncRNA downstream 35973 40255567 ~ 40255816 (-) True G57782
TU77865 lncRNA downstream 127509 40162984 ~ 40164280 (-) True G57754
TU77866 lncRNA downstream 127509 40163016 ~ 40164280 (-) False G57754
TU77855 lncRNA downstream 129685 40161527 ~ 40162104 (-) True G57748
TU78104 lncRNA upstream 359984 40664520 ~ 40664764 (-) True G57916
TU78114 lncRNA upstream 436978 40741514 ~ 40748539 (-) True G57925
TU78113 lncRNA upstream 444205 40748741 ~ 40755872 (-) False tprg1l
TU78108 lncRNA upstream 456959 40761495 ~ 40762172 (-) True G57920
TU78249 lncRNA upstream 1144677 41449213 ~ 41452982 (-) True G58031
XM_022670656.1 mRNA downstream 66279 40193493 ~ 40225510 (-) True LOC103039838
XM_022670929.1 mRNA downstream 112648 40165400 ~ 40179141 (-) True LOC103037008
XM_022670655.1 mRNA downstream 132552 40150647 ~ 40159237 (-) False LOC111192685
XM_022670670.1 mRNA upstream 3958 40308494 ~ 40310734 (-) True LOC111192686
XM_022670669.1 mRNA upstream 7183 40311719 ~ 40432211 (-) False LOC103040464
XM_022670667.1 mRNA upstream 19516 40324052 ~ 40432111 (-) True LOC103040464
XM_022670668.1 mRNA upstream 22657 40327193 ~ 40432211 (-) False LOC103040464
XM_022670671.1 mRNA upstream 188162 40492698 ~ 40508889 (-) True eif2d
TU77868 other downstream 112723 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 172694 40117789 ~ 40119095 (-) True G57727
TU77632 other downstream 728898 39521544 ~ 39562891 (-) False LOC103030299
trnaw-cca_41 other upstream 301493 40606029 ~ 40606100 (-) True trnaw-cca_41
TU78238 other upstream 1091550 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 2798334 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 3377788 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 4063364 44367900 ~ 44368368 (-) True G58649

Expression Profile