RNA id: XM_022670672.1


Basic Information

Item Value
RNA id XM_022670672.1
length 1946
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103024512
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40512253 ~ 40530993 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATGACGTGACCCGTGAAGCCAGACAGGTCTGAGTGTGGTCTCTGTGTGATTATTAGATAGGCTGCAGTTTAACAGCACTGATCAGTGTTATTATCAGAATGTTAATAAACTAGGTAGTTTTTAGTGCGTATGATTTTCTGTAGATCTGTAGAGTGAGGAGTGGAACAAGAGGACCAGAGAGGAGTTTCTTCAGCTGAGTGATCTAACAGAGTGATCTAACAGAGTGATCTTTGGCCGATCACTCTGAGAGTGCTGACCCCGGGGCTCTGTGATTAGATGAGGGCTGCGGGATGTCCGTGTGTCcggcggcggcagcagcagcagtagtggaGGAGGCGCTGGCCGGAGGCGGTGCGTGTCTCGCGGGGAGCGGTCAGgctaaagctctgcttcttcttcCAGACTCTTCTTAACCGGATAGTCCTGAAATCCCTTAATCGTCCCTGAATCAGTTCAGCAGAGCAGCGCGGAGGAGGACACTATGAGGATTTCTGCTCCTCCATCATGTTCCTAAACACTCAGAGTGACCCCGAGGCTGCCGGACAGCAGGAGGGGCTCCTGTCCCCCCAGCCCGCTCACAAACTCAGCCAGAGGATCAAGAAGAAAGTGATCACTGAGGACTATAAGCTCTCAGGGCAGGTGCTTGGAGTTGGCCTCAGTGGAAAAGTCTTCGAGATCTTTCAGAGAAACACGGGAGAGAAGTTCGCTCTGAAGATGTTGAAGGACAATCCGAAAGCTCGTAGGGAGGCGGAGCTTCACTGTAGGGCGTCTGTGTGTCCCCGGATTGTGCGCATCGCTGACGTCTTCGATAACTTCTACCAGGGGAAGAAGTGTCTTCTTCTCGTCATGGAATGCATGGACGGAGGTGAACTATTCAGACGTATTCAGGCACGGCGTGAGCAGGCTTTCACTGAGAGAGAGGCCTCGGCTATTATGAAGAACATAGGAGAAGCCATTGAGTTTCTACATTCCATTAACATAGCACACAGAGACGTTAAGCCGGAGAATCTGCTCTATACATCATCACATCCTGACGCTCAACTCAAGCTCACAGACTTCGGATTCGCCAAAGAGACCACAACCCAGAGCTGCCTGGCCACGCCCTGCTACACCCCCTACTATGTGGCCCCTGAGGTTCTCGGTCCTGAAAAATATGACAAGTCATGTGACATGTGGTCACTGGGCGTCATCATGTACATACTATTGTGTGGATATCCACCCTTTTACTCAAACCACGGCGTGACGCTGTCCCCCGGAATGAAGAAACGGATACGGAACGGCCAGTACGAGTTCCCCAACCCTGAATGGTCAGACGTGTCAGAAGAAGcaAAGCAGCTGATTCGCCAACTACTGAAAACTGACCCTACAGAGAGAATGACCATCACCGAGTTCATGCGCCATCCCTGGATCAATCGATCAATGAATGTACCTCAGACTGCTCTCCACACCAGTCAGGTCCTGGCAGAAGAAAGCCATGTCTGGGAGGAAGTCAAGGAAGAGATGACCAATGCCTTGGCCACAATGAGAGTGGACTACGAGCAAGTCAAAATCAAGACCATCGAGGACTCGTCCAATCCACTTCTTATGAAGAGAAGGAAGAAATTAGCTAATGCACCACCAGAATCACCAGggctataaaaaaacaaaccacacaaataccagcaacacacacacacaaacacacattcacacatacgCGTACAGGTTCAGGTCACAAGGGGCTCTTGCATATCTTTAGACTGCACCAAGTACCAGAGCTCACCTTGATCCACAGTCATCATGACTGGACTCAGACTGCAGAGACCGCAGTTTTGCCTTTTGATTTGTATATTCCAGAGTCCACCAAAGACCAACACAACACAGGGAATTCTCACCTCAAATTTTTAATGATGTGTTTAGCTTTTGttctcttttaataaataaaaaagaattggTTTGTCAGTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04443 MAPKAPK2; mitogen-activated protein kinase-activated protein kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650087.1 lncRNA upstream 177195 40315414 ~ 40335058 (+) True LOC111192687
XR_002650086.1 lncRNA upstream 177195 40324665 ~ 40335058 (+) False LOC111192687
TU77918 lncRNA upstream 199425 40308495 ~ 40312828 (+) True G57790
TU77920 lncRNA upstream 199425 40308495 ~ 40312828 (+) False G57790
TU77891 lncRNA upstream 211738 40292808 ~ 40300515 (+) True G57773
TU77970 lncRNA downstream 16562 40547555 ~ 40577973 (+) False G57824
TU77966 lncRNA downstream 22675 40553668 ~ 40556691 (+) True G57823
TU77969 lncRNA downstream 43986 40574979 ~ 40579801 (+) True G57824
TU77987 lncRNA downstream 48922 40579915 ~ 40584488 (+) True G57831
TU77991 lncRNA downstream 56415 40587408 ~ 40588158 (+) True G57834
XM_022670960.1 mRNA upstream 25679 40483010 ~ 40486574 (+) True LOC111192734
XM_015601667.2 mRNA upstream 226952 40258521 ~ 40285301 (+) True LOC103035984
XM_015601668.2 mRNA upstream 226952 40258521 ~ 40285301 (+) False LOC103035984
XM_007234631.3 mRNA upstream 264967 40237042 ~ 40247286 (+) True LOC103036504
XM_007234628.3 mRNA upstream 362181 40144064 ~ 40150072 (+) True LOC103035670
XM_007241280.3 mRNA downstream 12516 40543509 ~ 40553151 (+) True LOC103023889
XM_015605502.2 mRNA downstream 189811 40720804 ~ 40748739 (+) True wrap73
XM_007247918.3 mRNA downstream 774317 41305310 ~ 41315208 (+) True kiaa2013
XM_007247917.3 mRNA downstream 774319 41305312 ~ 41315208 (+) False kiaa2013
XM_022670698.1 mRNA downstream 787732 41318725 ~ 41335582 (+) True LOC103039684
TU77738 other upstream 465786 40044653 ~ 40046467 (+) True G57664
TU76991 other upstream 3506455 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 4548934 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 5087780 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 5273153 35226496 ~ 35239100 (+) False ikbkb
trnaw-cca_40 other downstream 68998 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 144047 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 843826 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 907034 41438027 ~ 41438911 (+) True G58025
TU78429 other downstream 1504957 42035950 ~ 42038982 (+) False ndufa7

Expression Profile