RNA id: XM_022670705.1


Basic Information

Item Value
RNA id XM_022670705.1
length 3751
RNA type mRNA
GC content 0.49
exon number 21
gene id dpp9
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41948019 ~ 41977048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTTTGGTAAAGCCCTCCGCCCGGAATCGAGCATGTCGGTGATGTCCGTTCCTGTTTTCGTGAGCAACTGCTGACTGTCGCTTTGTGTTGCTCACGGGCTATGGAGGCCGTTTTTAACAGCAAAATCGCTTAAAGAATCAACAGGTCGACAGATGAGAGACACTCTATAAGGGTTTACCTCTTGCAAGATCTAGTGGAGGCTTGTGTGCCGGTTAATGTATAGAGTAAAAAGGGTGAAACTTGAAGACGAAACAGAAGGAAGTTGGAAAAGTTTAGCAGCTGTCAAGATGACTGCAGTAGATGACCTTTCAGACAGCACTGAAGTGGTGGAGATGGAAGACGTGTCCTCCCAGTTCTTTGTGGAGAAGCACTCCTGGGATGGCTTGCGCGAAATCATCCACGGAAGTCGGAAGTACTCCGGAATGATCATCAACAAGGCACCCCACGACTTCCAGTTTGTACAGAAACATGATGATTCAGGCCCTCATTCTCATCGCCTGTACTATCTTGgtATGCCCTATGGGAGCAGGGAAAACTCATTACTGTACTCAGAAATTCCAAAGAAGATCAGGAAAGAAGCTCTTCTGGTTCTGTCCTGGAAGCAGATGTTGGATCACTTTCAGGCGACTCCTCATCACGGTGTGTACTCTCGGGAGGAGGAGCTCCTGCGCGAGCGGAAACGCCTCGGCGTGTTCGGCATCACGTCCTATGACTATCATGAGCAAAGCGGCCTTTTCCTTTTTCAAGCTAGCAACAGCCTTTTCTATTGTCATGATGGTGGACATAATGGCTTCATTCAGGCCGCACCCATGAAGCCCGTAGAGATTAAAACTCAGTGCTCAGGGATTCGCATGGACCCCAAGATATGTCCCGGAGACCCCAACTTCATAGCCTTCATCAACAACAACGACCTGTGGGTGACCAACATCGAATCCGGAGGGGAACGGAGGCTGACCTTCTGTCATAAAGGCTTGAATAATGTAAAGGATGACCCAAAGTCAGCTGGTGTCGCGACCTTTGTGATTCAGGAGGAGTTTGATCGTTTCACTGGATACTGGTGGTGTCCAGCAGTTTCAGAAGGTGCAGATGGAGGAAAGACCCTGCAGCTGCTGTATGAAGAAGTGGATGAGTCGGAGGTAGAGATCATTCACGTTCCTTCACCAGCCCTGGAGGAGCGCAAAGCTGATGTATATAGATACCCACGCACCGGGAGTAAAAACCCACAGATCAGTCTGAAACTGGCTGAAATTCAAACAGATGAAGATGGTGAGGTTACAAGCGCACAGACCAAGGAGCTCGTTCTGCCTTTCAAAACACTGTTCCCTGGGGTGGAGTACATCACGCGGGCTGGCTGGACAAAAGACGGCAAATACGCATGGGCAGTGTTTCTGGACCGCAGTCAACAGAAGCTGCAGCTGGTTCTCCTACCCCCTGCGTTATTTCTCCCGGTGGGTGTGGAAGATCCACAGTGGGAGGAGCATGTGGCTGCCATGCCTGAGGGAGTGCAGCCCTTCGTCATCTACGAGGAGGTGACGGATATCTGGATCAATGTCCACGATATCTTCTACCCTTTCGTCCAAACAAGTAACGACGAGATTAGCTTCCTGTGGGTGAACGAATCAAAAACGGGCTTCTGCCATTTGTACAAAATCACAAGCCTTCTACAGCCAGGTTGCCAGCAGTGGACTAAAGACTACACTCCCTCTGATGACGATTTCAAATGTTCAGTAAAGGAGGAGGTGACCTTAACCAGTGGAGAGTGGGAGGTGCTTGCTAGGCATGGGTCCAAGATCTGGGTAAATGAAGAAACGAAGCTGGTGTATTTCCAGGGGACAAAAGACACGCCCCTGGAGCATCACTTATACGTGGTTAGCTACGACTCACCGGGAGATATCGTCCGATTGACAAAGCCAGGCTTTTCACACAGTTGCTCTGTAAGCCAGAACTTCGACATGTTCATCAGCCACTATAGCAACGTGAGCACTCCTCCCTTCGTTCACGTCTACAAGCTGGTTGGTTCAGACAGTGACCCTTTGCACAAAGAGCCAGAGTTCTGGGCCAGCATGATGGAGGCAGCAGGATGCCCAGCAGATTATGTTCCACCCGAGATATTTAGTTTCCCTGCAAAGTCAGGCTTTGATCTGTATGGAATGCTGTACAAACCACACAACTTGAAACCGGGCAAAAAACACCCAGCCATACTGTTCGTGTATGGTGGTCCACAGGTGCAGTTAGTGAACAACTCTTACAAAGGAGTGAAGTATTTGCGTCTGAACACACTAGCATCTCTAGGTTATGCCGTGGTCGTTATCGATGGAAGAGGCTCGTGCCAGAGGGGTCTGAAGTTTGAAGGGgctctaaaaaacaaaatgGGTCAGGTGGAGATTGAGGACCAAGTGGAGGGTCTTCAGTATGTGGCTGACAAGTACAAGTTTATAGACTTAAGTCGTGTGGCCATTCATGGCTGGTCTTACGGAGGATTTCTCTCCCTCATGGGACTCATTCATAGGCCGAATGTGTTCAAGGTGGCCGTAGCCGGAGCTCCTGTAACAGTGTGGATGGCGTATGACACTGGCTATACTGAACGCTACATGGACGTGCCTGAAAACAACCTGCAGGGCTATGAAGCGGGTTCTGTGGCCTTGCATGTGGACAAGCTACCGAATGAGCCAAACCGGTTATTAATCTTACATGGGTTCCTTGATGAGAATGTGCACTTTTTCCACACCAACTTCCTGGTGTCTCAGCTTATCCGTGCAGGGAAGCCATATCAGCTACAGATCTATCCCAACGAGAGGCACAGCATCCGCTGCCCCGAGTCCGGCGAGCACTACGAGATCATGCTGCTATATTTCCTCCAGCAGAATCTCTGATGAGGGCTGCACTTTGTTTTGGGACGGTCTTCAACCTCCGGCCACCCTCCACCCGTCATCCAATCACACAACCCCCACCGCCTTCGAGCAGCCATGACGTAAACAGCTCAGGGCAGCGCTCTTCTCTCTAGCCTTTTTGCTTGTctgttctccctcctctggaAACGTCTTTTTTGCTACAGCCTGGAACAGACTTCTCGCGAATGCGTTCAGTGTCGAGCATGTGAGCAGAGTTTTAACAGGTTTGATGAAAGGACAGACGCACCCGAGACGCGGGGTGCGAGCGGCACGCAGTACTTTCAACTAAAGGAACTTTGTAGCTCATGAACTTCTAAgcagttttctgtttgttttgggtCACTTTCTTCGTGCCACGTCTAGCTAATGCTTCTTTTCCTCCTGACCCCCGAATCCCAACACTGACTACGTTGCCAAAATGTCtcgtttattttgtttttttctttttaaaatttccCGCTAGTGGCTTAACAGACGTATATTGAGCCGTTCTCTCGTTCTCCCACCCCCCTACCCTTTTCCCCCCTTCCATGTTCACGTACAGAAATGCTCTTATCTCCCTCCCTCTGGTTAACAGATCATTTTAACTTAAAGCAAGCTTTTTCTATTGTGCAAGTACAACAGTTTGTGCTCACGTGCAACCTGGATTACAACACGTCACCTTGTCAGCCGCGGGTTGCGGCTCTTGCATAAAGACACCTCACACTACTACCTGCAATTCATATTTTAAGTGTGTATTATTAAAGgaacatattttttatgaattccAATTCTTTTTATAAGTGGTGTGATGTGTAGAAACTCATTAAATGACTGTGATTCCGTGGTGTTTTAACTAGGTGGCTACAGTCTACAGTTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K08656 DPP9; dipeptidyl-peptidase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78335 lncRNA upstream 184441 41758283 ~ 41763578 (+) True G58096
TU78306 lncRNA upstream 256631 41691121 ~ 41691388 (+) True G58074
TU78281 lncRNA upstream 368971 41578321 ~ 41579048 (+) True G58054
TU78188 lncRNA upstream 651345 41294584 ~ 41296674 (+) True G57987
TU78166 lncRNA upstream 692580 41252811 ~ 41255439 (+) True G57972
TU78357 lncRNA downstream 32998 42010046 ~ 42030054 (+) True G58114
TU78430 lncRNA downstream 58902 42035950 ~ 42053889 (+) True ndufa7
TU78434 lncRNA downstream 73093 42050141 ~ 42051109 (+) True G58177
TU78462 lncRNA downstream 151142 42128190 ~ 42131034 (+) True G58201
XR_002650088.1 lncRNA downstream 389084 42366132 ~ 42422813 (+) True LOC111192688
XM_007247929.2 mRNA upstream 13447 41910748 ~ 41934572 (+) True LOC103035003
XM_007247931.3 mRNA upstream 13447 41910838 ~ 41934572 (+) False LOC103035003
XM_022670704.1 mRNA upstream 44306 41785640 ~ 41903713 (+) True plch2
XM_007247925.3 mRNA upstream 495056 41440699 ~ 41452963 (+) True mthfr
XM_007247924.3 mRNA upstream 549914 41396141 ~ 41398105 (+) True LOC103032860
XM_007247935.3 mRNA downstream 58791 42035839 ~ 42038914 (+) False ndufa7
XM_022670708.1 mRNA downstream 65279 42042327 ~ 42059412 (+) True LOC103027292
XM_007247993.2 mRNA downstream 85250 42062298 ~ 42067929 (+) True LOC103027595
XM_007247936.3 mRNA downstream 99426 42076474 ~ 42077943 (+) True LOC103036755
XM_007247943.3 mRNA downstream 454442 42431490 ~ 42532518 (+) True espn
TU78242 other upstream 509108 41438027 ~ 41438911 (+) True G58025
TU78217 other upstream 570589 41374819 ~ 41377430 (+) False LOC103032352
TU78022 other upstream 1267464 40675040 ~ 40680555 (+) True G57856
trnaw-cca_40 other upstream 1347957 40599991 ~ 40600062 (+) True trnaw-cca_40
TU77738 other upstream 1901552 40044653 ~ 40046467 (+) True G57664
TU78429 other downstream 58902 42035950 ~ 42038982 (+) False ndufa7
TU78480 other downstream 231673 42208721 ~ 42281970 (+) True G58211
TU78548 other downstream 600144 42577192 ~ 42626114 (+) True G58256
trnar-ucg_3 other downstream 861790 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78895 other downstream 1683734 43660782 ~ 43661647 (+) True G58529

Expression Profile