RNA id: XM_022670720.1


Basic Information

Item Value
RNA id XM_022670720.1
length 4418
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC103045241
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42915487 ~ 42947000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagccgcGCGAGCCGCGATGACACGAGCGAGCTGAGCAGAGAGAGCAAAAGACATGAGAGACTGCAGCCcatcgttatccaggctcaCCTCGGGGAGGCAGAACATTGCCACAATGCCTCTGCTGACACTTTCACTGCTTCTGGTTCTTGTCCAGCTGGTTACAAGCCAAGTGCATGTGAACTCTTCCTTGTATGATGGAAATGTCTCAGATACAAAACAGCCTAACCTGGGGCCTTTCAAGCCCACAGGCTGGATGGACGATCATGAAACTTCATCTAAAGAAGAAACCGCAGTGGATAATAAGAGAATAAACTTATCTGTTTCTAAGCAAGGAGACAGTGTATTAAATGGACATCCAGAGGAACATAATTTACCTACCAGTATGGAGGAGGTAAAAACGGAACTTACAACTCAGTCGATATTTTCTAAAAGCAGAGTCTCAACCAAAACTCAGAGGCCTACAATGAAGCGGATTATAaccaccacacaaacacagcaacTAGGAGAACATTCTGAAAAGGCAACAACCAAATCCCCACCGGCCAATCAAAGCTCAGACCACTCAATGGTCAGAGAAGGAGATGCAGTAGCAGTGGAAGAGCCAGTGATGGAAGAACCGATTCATGAATACAGTGAGGAGGACGTATTAATCCCTtctgttattagtgtagtgGAATCCTCAGGTGAGACTGTGGATAGGGATGGTGTTGAAAGTGCCCAGTACAGACCTCAAGCTCAAACAGCCTACAGCGTTTTGACCACTGACTCCAATGCTCAGAAACACCCTACTGTAAGCTCAGTGTCTCCGCCTAGACCTTCCAGTAGTGCACTGAGCAGTGAGAAACCTGCAacaacatcagctttaaacGTGGAGACCTCAAGAGTGACAGTCAGTCTGCCTGCTGTGCAGAATGAAGCTAAAGCCAGTCCAACCGTTTCAGCGGGAGACCAGTCACAAGAAAGTTCACAGTCTCCATCAAATTCTCCATCACCCAGAGACAGCATCCCTTTACACACAGGCACAACAACCAATCTACAGATGATAACTCTGCTTCCAACTGAAACTCCAGCCAGTTCGACCAATCCACAGCCAAGAAACACAGTTCAACCATCAAAAGCCTCTACATCAACCAAACGGCAGCCCAAAGGGACAGGATCTAGCACAACCAGCCCTCAGAAACCACAGACCAACATCTTCAAAAGCTTGCCCCCTGGAAGTACAACAATTCCACAGAGCCCAACAGATACTACCACTTCTCCAAGCAAAACTCTTCCTCCCCCAAAGGGACGTGGACGTATGGTACCAATAGAAACTGAAGCAGCAAACGTAGGAAAAGAATTGTCCCTAGGCTACATTCCTTCAGTTAAGCCAGGATCCATCCCATCAACAACATACATCTCTAAGGAACCCTGTGACGCTTCTCTGGGCCCCTGTGGATCTCCTAAAGACCCAAACGTTCTCAGTGAGCTTGGTGCTGCAAACGGGAGCCTGCTGGTGTGGGCAGACCTTAGTCGTACATTGTCTTTTGCCTGGGAACTTCATGTTTTCGGCTCTGCTGCCCTTTTTCTGCTTCTTACTGCTGGATCCGCTCTGGGTTTGGCCCTgtctcccagcatgcactgtcCTCACCGTGGGGCGCTAGCGCTAGCTAATGGGTTGTTGCTTCTGGCAGGTGCTATTCGAGCCGCCTACTTCCTGCTCGATCCCTATGGGTCTCGGCTACTTTTGCCGTTGCCTGTTGTCACTGCCCTGTACACTTTGCCACTGCCTCTCTTAATATGGGTACAGGCTGCGATGGTGGTGCTGGTAATAAAAGGGGCTGAGGTGGCTCTGCTGCCTCTGTCTTTTCAGCGACCTCCTCTTCTAGGTATACTAGCCGTCCTCCAGTGTACCCTGCTGCTGGCTGCGGACCTGCTGTCTCCTGCACTGTCACCTGCTGTACCTGTGGTTTTGCAGAGCCTCACTTTAACAGCAGGATTGGTACTCTGTCTAGGCTATCTCTTTCTGGTGCTGCCACGTCTCTCAAGCCCCCAGGCAGGACATGTTGGAGATAAAGGCATAAGCGGCTCAAAGTTAAGGGTACTGGCACGCGTGTTGGCAGTTTGTGCACTTCTCGGGGCACTGTGCTGCTTGTTGCATGCTTATACCTGTCTGTGGCTGTACGGTCTGCTGGGGGACTGGAGGCGCTTCCGCTGGACATGGTGGCTGTGTCAGTTCTGGGCACGGCTGCTGGAACTAGGATGGGCCTTTTGTCTGCTTTTGTTGGCTTCCTGGGTCTTCTGGAGACCTCGAGGGCGACAGACACGAAGAGCTTCAGGGCAGGGAGGGACTTCTGCAGGGGAAGCCCCCTCACCCTGCCAATCGTCCAGTTCTTCCCACACACATACTTGCTGGGCAAAGATTGTGCAAAGCTTAAAGGGGCGTCCGCATAGGAAATCTGACAGCAATGGAGTGGGAGGGGCAAATGGCAGTGGAGTTGCGGGAGAGCTGCCCAACAATTGGGCTGGACAAGAACGTTCAGGAGCAGATATCAGCAAGAGCCTCATACGCAACCGTGACCCACCCAAAGAAAGCAACAGGGGACGCAACCAGAGAAGCATCGCTGAATCATCAGCCGGGTCACTGCTAAGATTACAAGCCCTTGGTGAGGCTCGCCAATGCTCGGTGAGCGGCAGTCTGGACCGGGACAAAGAGTCCGCCATCTCACTGTATGACTTCGATCTGCGACCTCCCTCGCCCATTGACTTGAGCCGCAGCATCGACGAAGCTTTACACCGAGAGCATCTCCTGAGGGGTGGAAGTCTGTTTCGCCCATTGGGACTGCCGTCACCCCCTCCATCTCCAGGACCTTGGATGCGCAGGAACAGTGACCCTCAAATCATGCTTTCAGACAGCAGTGACGAACACACCATGCTGACTGAGTCGTCTGCTGACCTGGACCGGTCCATCCCCAGTGCCGTTCCTAGTCGGCAGGTCACCGCTCCCCCTACACCCACCCATCAGGGCCCACGCTGGGTCTCTGACGTTCCTGTGCCTTCCTCCATGTCCTGCCCCGTGTCCCTGCACCCCTCCCCGAGTGCAGGCCGAGCTGCAACACCCAGCACAGATGACACCAGACCATTCCTCACCCCTGAAATGGACATAGAAGGCTCACGGCCTGATAGCCGAGGTGGGGGACGGAGATACCTAAAAGTCAATCGGCAGGATGACTCGGCTAGTGTCAGTAGTGACATTATCGACCTTTAAACTGGTTTAAATTTACAATCCATCTCACATAATctaaaaaagataaagatgaGAAAGACATGTAAGAGACACATCCCAGAACTACGAGTCAGAGAGACCTCAAAAGAGAAAAGACTCATGTCAGATTGAACATTAAGCAACGGATTTTCACACTAACTTACTCTAAATGGGATACTCTGATTCCGAAGGTGTCTGTTTAAACAGTATGCTCTTGCACATAAATTCATTCCACCACAGTTGAAGGTAGGTGAAGCTTGCAGAACAGCTTGGAAAAGCAGAATGTGAGAAAAGGTGGCATCAATAAAGAGAGATTATCTTATTGATATCCATTCCGAATATCCAAACAGGCTGGATGTGTTTGCACAGTTAGTTGTAAATTCACATTTTAACCAAGACCGTTTTAGGGCCCCTAGTTATCAAGCTTCTCAGAATCACTAGTAGGAATTGTGCATAAAATGAACTAAGATGATCAAGGCTCAAAGTATATAGGACAAAAGACAAGTTGTCAAACCATCTTCACAGATTCTGACAGAAGGCTACAGccattcttttaaaaatgaattaaagcaTATGTTTCAGACATTCCTTGAACTGCAATAAATTGTGAGCATgataacatttaacattacaATGACAATTCAATTAAAATTTGTTAACTATTTGCTTACAACCAAAAATCATAGGTTTCTTTTGGGGGTAATGTTTTGCCTGTACTATGACGGTAGAAAGGgggctttaaaatattttttgttgttagcTGCATTGTCTTTTACAGCCTATATAAAGAGTAAATGTAAGTGATGAAAGTAAAAActgcttctaaaaaaaaacaattgcttACCTTTGCTGTCTCTCTGCAGCCATCTTGTGGCAGCTCCCAGCTATTAGCATTTCAGTGCTTTTATGTTCTTGGAATGTTGATCATGTACTTTAACttgtttaaccctcctgttatattcatttgtcaggaacagcagtgGTGTTCCCGGGTCAGTTTGAtgtggtgcatgtttaattatgcaaaagatgtctaaaaacaaacaaatcctAACAAgtagtgtgaatatttaatgaCTAACTTCAGTACTAATactattttatcaatatttagtgcaatgttgTTACTtgcctctaacaggtaatggttaaattaggataattc

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78564 lncRNA upstream 265954 42628621 ~ 42649533 (+) True G58267
TU78565 lncRNA upstream 265954 42640052 ~ 42649533 (+) False G58267
TU78566 lncRNA upstream 266222 42630338 ~ 42649265 (+) False G58267
TU78562 lncRNA upstream 301928 42611649 ~ 42613559 (+) True G58265
TU78544 lncRNA upstream 341310 42566548 ~ 42574177 (+) False LOC103040535
TU78797 lncRNA downstream 223141 43170141 ~ 43172830 (+) True G58444
TU78809 lncRNA downstream 373756 43320756 ~ 43326039 (+) True G58454
TU78815 lncRNA downstream 399385 43346385 ~ 43349871 (+) True G58460
TU78914 lncRNA downstream 761716 43708716 ~ 43708986 (+) True G58542
TU78939 lncRNA downstream 1065130 44012130 ~ 44012825 (+) True G58564
XM_007247960.3 mRNA upstream 42432 42862953 ~ 42873055 (+) True ogg1
XM_007247956.3 mRNA upstream 147899 42764003 ~ 42767588 (+) True angptl7
XM_007247953.3 mRNA upstream 304469 42599341 ~ 42611018 (+) True LOC103040839
XM_015605503.2 mRNA upstream 304469 42599344 ~ 42611018 (+) False LOC103040839
XM_022670718.1 mRNA upstream 304469 42599344 ~ 42611018 (+) False LOC103040839
XM_007247968.3 mRNA downstream 99479 43046479 ~ 43057716 (+) True pcbp2
XM_007247969.3 mRNA downstream 99803 43046803 ~ 43057716 (+) False pcbp2
XM_007247970.3 mRNA downstream 146419 43093419 ~ 43107630 (+) True aaas
XM_007247972.3 mRNA downstream 162418 43109418 ~ 43136318 (+) False LOC103047068
XM_007247974.3 mRNA downstream 162424 43109424 ~ 43136318 (+) False LOC103047068
trnar-ucg_3 other upstream 76577 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78548 other upstream 289373 42577192 ~ 42626114 (+) True G58256
TU78480 other upstream 633517 42208721 ~ 42281970 (+) True G58211
TU78429 other upstream 876505 42035950 ~ 42038982 (+) False ndufa7
TU78242 other upstream 1476576 41438027 ~ 41438911 (+) True G58025
TU78895 other downstream 713782 43660782 ~ 43661647 (+) True G58529
XR_002650089.1 other downstream 1632126 44579126 ~ 44583918 (+) False LOC103028384
TU79126 other downstream 1648233 44595233 ~ 44600960 (+) True G58696
TU79125 other downstream 1648922 44595922 ~ 44600960 (+) False G58696
XR_002650090.1 other downstream 1905780 44852780 ~ 44866838 (+) False LOC103029434

Expression Profile