RNA id: XM_022670827.1


Basic Information

Item Value
RNA id XM_022670827.1
length 9636
RNA type mRNA
GC content 0.57
exon number 42
gene id cep350
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49203268 ~ 49268872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGTAATGGCGGAGCGGCTAACGGCTccattacagagagagagaggctaacCCTTCTATACTCAGCTCTACACACTTTCTGACACACAGTGATACGGGCTTACCCGCCGCGTCCAGGGTTGTTTTTTCTTCGTCTCCGGACCCTGATGTGTGCAGCAGGCCAGAGGGCGGAGCCGGGTCACGGTTCTCTGGGAGGTGCTGTACGTTGGTTGCCGTAGCGATGTGGAGTGGGCAAAGAGGAGAGGGCACAATGCCCACAGCTGCGCCGGACAGCCGGAGAGAGATCTCGGCTGCTTGGAGGAGTTTAAACCAGAGTAAATCTGCTtTGCGGCACATAGAGAATCATCTGGAGGCAGTGTCCGGCTCAGGGGTGGTGCTGGACACACTGATGACCACAGAGAAAACATCTGTTCGTGGCAGTCGCAAAGCCAGCCGCAAAGAGAGGCGTGGAACAGACGATTCCGCAGCGTCCAAATCCCAGCGGAGCCGAAACCCAGAAAAGAGCTCCCGCAGCCCCCTGAGAACCAGTACACAGGACAACAGCGCAGAGAGAccgcacacacactccacacacagggaAGTGtatcctcctccttctcctccggTTGCCCACTGTGTGTCTGCCCCCTCGGCGTCCCTGAGCGAGCTGGTGTACGAGCGAGACTCGCGGCCGGAGCAGACGGCCGATCTGGACAGCACCCGCTCCTCAGCGCTCGACAACACCACCATCCGCTTCCTCAACGACCCTCCTGTTCCCGGGTCAGCAGGTGCAGAGGTCAGAGCCGCAGGGCTGCAGGCAGATGGGCAGACGGGAGCGCCGGCGGGCTCGGTGTCGTCCAGCCCGGGGTCGGCGTCGGTACGGCTGGAGAAACTGCGTCAGCGGCAGACGGACGGGAAGCTGGAGAAGCTGAAGGAGCGAATCCGCAAACAGAGGGAGCAGCTGGAGGAAtcggcagagagagagagaatactcGGCCGTCTGGAGCAGCCGGTGGGCATCGGGGCGTCGCTGGGCACCACTGTGCCTACTGCTAAAGTACGCAAAGTGGCACCTGCTCCACCTGCGCCCATCTATAAAGGGTTTAACACAAGTGAGACCACAATTCGCACTGCGGACGGACGGGTGTGGGGGGAGGAGGAGTTCCACAACTACAGCAGAGAGATCTACACACACCACCTTAcagaCGGAGTGAAGCAGAAGCcgaaggagaaagaaaagaaggtgGTGGAGAGAAAACCAGTCAAACCTGTGAGGAAGATTCACCGGTCAGCATCTGTTCCTGACCCACAGACCAGACCAGTGATCAGCACGTCGTCATGGCGGGAGGGACAGAAGCTGGTGAAGATGATTCTGGGTCCATCACCTCGGCTGCCCGGCGAGCCCCGCGCTCaatctgcagagagagagagacggacagGTGCTTCGTCTCGCTCCAGTTCTGACCCTCGGCTGGAGCTGAATCGTCGCTCTAGGCCGAACAGCACAGAGCGGCAAACTGCGAAGATCTCCAGACCAGCAGGGGGCGATAGAGGCAGAAAACCTGCAGTGAAAGAGCCTTCCagGCCAGCAGGGGGCGACAGAGGCAGGTCCCCCAGCACCGATCGCCTCTCAGCAGACATCCAGGGCATTCTAGACGACCTGCAGTTAGAGGGCGGGGCTGAAGTACATGAAGAGGGCTCACCTAGCAGGAGGAGTGCAGGACGGCGCGCCCAAGCTCCAATCAGATCATCCCGAAGTGTCAGCCCTGCTAAACCCCACCCAGACAAAAAGAGGCAGTACGATGCAGAGGCGGTACGGCAGTACATCGCCCGGCAACAGGAGGACAGGAAACGGAGGCAGGCGGAGGAGAGGCGGAACCAGAAGGAGGCAGAGCACAAGAGGAGTCAGCGACTGCAAGAGCTCTACAGGAGGCAGAGGGAGGGAGTGGCCAAGCCCCAGGCTCCTCCCACCAATTCCACCCGTTCTTGTCTGCAGGACACATATACTAAACTATTACTGGAACACAGACTGCAGCagtcgaGGCCGTTGTATCAGCCTTCTGGAGAATcagataaagaaaataaaaggcaGGAACCTCCAAGCCCCTCCCACAGTGACCTTTCCATGTCAGAGCACGgaccaccagcactgaccaGAGCTGAACTCGGCGTGGGTTCTCTGCCCAGCGCCGCCTCTCTGGTCCCCTCTACTGGCCAGCTCTTCTCACAACTCCTGGCGATGGAAGGGGCAGCAGCAATATCACAGCCAGTAGATCTATCTGCCACTCATACCATCCGCGCCCACCCGAGCAGAACTGCCCACGCCAGCAGGCTGAGCCGGGTCGAGGCTCTGAAGGCCAGTGCCGTGTCTCTGTCCAGCCGGATCGAGAGCGAGGCTTTGAAACTGGCTGGAGGCGGAGTCAACTACGGCGTCGACTGCAGCCGAAATGTCGGCACGGGACTGCCGCCAGTAATACCCCAGGATGATGAAGCAAACTTGATAAATTCACTCAGCCCACCAGTCAGAGAGTGCCCAGGGGGCGCCGAGGAGCCGGCTCAGAGGATCCAGAGGCTCCTCAGTGCGGGCCAGAGCGCGTTCGGTACCGACCCAGCTGAGCTACCAGGAGTGGGAAACCTGTATGGCTTCGGGTCTGCGGAGAGGAGAGAGTACACAGCTAAGCCCCGCCCATCCCCACCTAATCCTGCCCCATTATTCCCAGAGAGGGCGGAGCATCTAGATTCAAGTGGAGGCTCCATCAGCGAAGGCCTGCTGACTGAGAGCAGCCTGTCTGATGCAGAGGACCACCCAGGTGACCCCACAGATGTCCTACTGGACCTCCCCAAACCCTCTCTGAAACTGAGTGGAGCAGATTACTGCGCCAGTCTGCAAAACGGCCCCACCTACGATCCAATCACGCGATTCCAGAGAGAGGCGGAACAGCACTCCCCCTATAGAccagcagcagcactgcaggACAGCCGGCCGGCGTGGGGAGATCTAGCAAAGGGAAGCCCGAACAGTGTCATCAACATCTTCACCAAAAACCTGCAGAACTACAGCAGAGtgCTGGATGTTGGTACAGAAAGGGGTTCTCCTGGTCTTCGTGGTGCTGGTTCTGTCTCTGGCTCGCTAAATGGCCTGGCCTATGAGGATGACTTCATTTCCTCCcgcagcagcagccaatcagcatcGAGAAGGACTGGTGCCAGCCTCAGTAATGGCCACAGTGCAGCAGGTGCTGATGAGAGGAGAGAAAACGGGAAGTCCTCAAAATCCTCAAAATCCTCCACCCCACTGTCATCaccacactcaacacactccaCCAGCAGGAAGGGATCAGAGAGGAGCCAAGAGCGCCCCCCGGTGGACGGTCAGAGGAGTGCGTCCCGTCCCGTCTCTGAGCTGCAGTGGAACGGGGTGAAACAGAGCCCCTCCCCTAACGGTTCTCCCCGAGGGTCTCAGAGAAGCGCAGACACAGGCAGCACTGCAGGGGGCGCCTCAGTCCACTCCACTCACAGTGCGGTTTCTGAGCACCAGCGGTCTCCCAGAAGTCCTGCGGGGTCTCCTGCCGGGTCCCCAAGAGTCTCCCCACCCACTGGCTCCTCACACACCTCCTCACCCAGACCTTCCAGCATCAGGGACACTGGACtcagtgctgctgctgaaaCTGGGCCTGGTTTGGAGACGGGCACCTCCAGAGTTCCGAGCAGGAGTGCAGCTGCTGTGGAACTGCAGTTTGCTCCGGGTGTGCTGCAGCAGCGTCTGAGTGCGGAGCTGAGTTATATAGATTCTGTGGAGGAGTCGGTCCGGCAGCTGGGGGATGTGGAGCGAGTCCGAGCGGTATCTCTCGCCCAGCAGGAGACCGTCGCTCTCGCCCAGATACTGAAGGCTCAGCAGCAGAGGCAGGAGAGggagctgcagctgctgagGCTGAAGGCGGAGCAGGAAGCACTGGAGACTCAGAGACAGTTACAGGAGAGCCGAGAGAGAGCTGCGCAGgCTCATACGGAAATGTGTGTTAACCTGGTCCAGTCACAGCAGCAGGTTCTCCTGGGCATTCAGGAGTCCAGCAGCAGGATCATCAACCAGCAGACCGAGACGGCTCAACACACTGCGGCCACTGCCAGACACATCCGAGAGatGACTGAGCTCGCCCGCTCTCAGATGCTGAATGTTCCCATAGTCACTCCTTTCTACGACCAGCAGAAAGAGCCACAGCCACAGACGGACAGTCGAAGTGAGGTTCCCCCAGACAGTGGACAGTCCCCATCAGCGGAGACTCCGCCTGACAGCTTGTCTGAATCCATCCCGTCCAGAAGACCCACCATCAGTGGTGGTGGGAGCAGTCCCAGGCAGAGCCCGTCTCTCTCCTCGTCTGTGAAGGAGGTGGGTGAAGATGGTGGAGGAGGTGTAGAGCGCAGCAGCTCAGTGGAGGAGGAGATCCACACCGCCGTTGAGGAGTCACTCCACACAGACAGCGTTCAGTCCCTGCTGGAGGACAGAGGAGACAGTGCGTCAGTTGCGACGGAGTACTCTCTGAAGTTTGAGGAGTCTGTGACGGAGGACGAGCTGGAGAAGTCGTTCCGGTCCCTCCTGCCCTCTGAGTCCCACTGGAGAGATTCTGTAGAGCGGAACCGGAGCCCTCTGCCAGAATCAGACGAGGAACGCAGCCGAGCCAAGTCCTCTCCACAGCTTTCCAACAAGGACAGCAGCATGCCGTTCTCGAGTGGCCAGGACAGCTTCAATAAGTTCACGATGACAATGGTGAAGCAGTACATGCAGGAGGAAGAGGTCCGAGCTCAACACCAGAGCTCTCTGCTGCGACTCCGCCACCGAGCCCTGAAGGAGAAGACCAAGGCCGAGCTCGCCTGGCTTGAGCACCAGAAAAGGCGTCTGAGAGATAAGGGCGAGGATGATAAGATGCCACCCATCCGCAAGAAGCAGCGAGGATTACTGCTTAAACTGCAGCAGGAGCAGGCGGAGATCAGGCGGCTGCAGGAGGCAAATAAGGCGGCGCGGAGAGAGCGGCAGctgctattaaaacagcaggagGAGATAGAGAAGATTCGGCAGAGCACGCTCCGCCTGAGGGAGAAACTCCGTACTGCTGGAGACCAGAGCCCGAGATCATCTATCTCAATTGAGGTAAAGGAGGCGGAGCCCAGTCTGGCGACGGACGCAGAGACTCGCAGCCCCTCCCCTCTGTCAGTGTCTGGCAGCGAGACCAGCAGCATCATGCAGAAACTGAAGAAGATGCGCTCCCACATGGACGAGAGgcagtGCTCTCctgtgctgtgttttttctctgtgtttggtGCACAGCACTGGGCATCTCTCCGCCTCTGTCTCCCTAAACTCCGCCCTAAATTCCAGCTCTATATCTACACTCAGTTGGTCAGgttccTGACGGAGCGAGAGCAGCGGCTGGTGCGTCGGCGGCTGCAGGCGGAGGAGCTGCTGCAGTGGCGGCAGCGCTTGGATGCGGAGGAGGCGGCAGTGCGGCGGATGGAGAAACAGGCTCTGGCGGCCTGGGAGCAGCACCCCCAGTGCAAACACTCCGCCCAGCTGGCACAAGACTCCATCCAGTCCCCCAGCAGCACCACCTACTTGCAGGAGAGGAGTGCAGGCAGAGAAGCGGTCAGTGAGGGCGACTCCTCTCCGGGGTCCAGCGCACGCTCTGCTGGGTGGGTTTCAGAGCAGTTGGTCAGCCCTTCTTCAGACAGTCCCACATCCAAACTACCCTCAGCCCATACCAGCGGCAGCCCTCATACCCACACTAACTCCGCCCAGCCGTCCCACAGCCCACAGTCCCACAGCCACGAGACCCCTGTTACTAATGATGGCTCCAGAAGTAAGCTGGTTGTACACAGCCCCAGGAGCAGCGAGCCCCGCCCCTCAGCACCAACATCAGAGGCGGCGTCAGACCAGAGCGATATTGAGGGGCGTGTCCTGGCGCTGAAGGAGGAGCTCCGGCGCCGGAAGACTGAGGTCCAGCGGCTGAAGAAAGtgcagaaacagagaaacaaagagcGTCTGAAAGCTCAGGAGGCCAGTCTGCTCAAACAGCTGGAGTCCTATAATAACTTCATTGAGAAGACGAAGGCGGAGCTTAGTAAAGAGGCGGACCACACGCCCACAGCTAAACCGCAGATTAAAACTCCTGCGTCCGGCACGGAAAAGCCCAGTATCAGATCCCCGGCTTTACACAGACCTGATGCTGAGAAGAAGCTGAAGACCTTCAGCAGCTCAGAGGAGAAGGTCCTCACTGAGTCCCTGATCCAGAGTGGAGGCCGCAGCGAGCCAATAGAAAACCATGAGGTCAATTCTTCAGATGAAGACCCGCCCACTGTGACCCCAACCCCGGTGTTTGGAAGCCCTGAGCGTGTGGGTTCGAGTCTGGAGTCTCCAGAACCTCAACCTACCAAGACCCAGAGCTCCACCAAACCACAGCCCGACGTCTCTGCTGATGAGAGTGTGGTTTCCAGCCAGAGGTCAGATGTCATAGAAGAACTGGACTACCTGAAGTCCGAAGGTTCTGGTGACGACCACGACTCGACACACTCGGACCAGCACTCACAGCCACTGCTCAAATTAGATATTCAGCTGCCGTCACACATCAGGGCTGAGGAGGTCAATCCCGAGGAAAAGACTGATCTGACTGAAACAAGCCAACGTGAAGCCGAAGAGGAACAGTCTGGAGAACCTGTGACAACCAAGGAGCCTGAAGCTCTGCTGGAGAAAAGCTCTTCACCTGCAGATGGATCTTACACTCCTGACTTTTCACCCAGGAAAGATTTGGATGAGCCGAAAGAGACACAATCACTAGTTCAAACCTCAGTTGACAGGTACAATGATGATTTTGAGTCGTCATTTGACTCCTCCTTACGAGAAGATCGTAAAGGATCTGAGCCAACCTCACCTTCAGCCCAGCAACCTAAAGAGCAATCCTACAAATCCTCGTTTGTTAGCAGTGAGGAGGAGATTGATGAAGAGCTCAGTGTCAAATCTGGGATTACCAGCGACAGCTTTCATCCTGAGAGACCGCTGGATCTCCAAATCCTGGCAAAGCCTTCCAAAGAAACCCTCGGCGATGATCTTTTTGATGTCGCCAACTCTCCAAAATCCCCAACCGCACTCACCTCCAGATCAGCAGCCTCTTCACCACCACCCAGAGACGAGATGCCCAGCTACATCGTTGGCGACCGGGTTCTGGTGAGCAATGTCCAGCCGGGCACGCTCAGATTCAAGGGCTTGACCAGTTTCGCCAATGGGTTCTGGGCTGGAGTGGAGCTAGATAAGTCTGAAGGAAGCAATGATGGAAACTACGACGGGGTGGCGTACTTCCAGTGTAAAAAAGGACATGGAATATTCGCCCCTCCGGACAAGGTCACGCCTCTACCTGAGAAGTTTGAGAGTTTCGTGGACACATCTGAGGATGAGGACTCTTCATTAGATGATCAGTCACATAAAACATCAGAGAAGCTCAGCTCTGAAGATTCTTTGCAGCGAGACCCACTGCAGGATGACAAATCAGGTCCTCAAGATGTTTATTCCGGATCTAAAGAATCCTCCAGTAAACCGTCTGACCTAGAGCCTGGACAAGACAACTTGAAGCTTGACCTGGAGGATGACGTTAATTTCGATATTCTGAAGAATCTTTCGGTACCAAATGGAAGAAGCAGAGACGTCATCCTGGAGTTTGAAGACGTGTCGCAAGGCAATGGTACCCTACCCATCAGCGTTCAGGAGAAAGAAACATCTCAGCTTCCAGAAGAGACGCAAACGGCGGACATCTTGGATTTGCTGGACCATGGTAAGAGGCCCAGGGTTGAAGGACTCCAGGAATCCTCAGAGCTCTTAGTAGAGAAGGTGACGAGTGTGGACCAGGTAGACCAAGTGGACAAAGTGGACGGAGAGGTCAGCGAAGGCCAGGCCCTCAGCACCCTCGCTGATAAACTGCTGGACAGCTTCATGTCAGACACTCTGAAGCAGTTCCAGGAGATAAAGAagatgaaggagaagaagatAGCTGCCGCCAATCAGCAGAAAGATGGTGTCCTCAGTGAGGATGAAGAACTCATGGATAGCTTCTCCCAGTTCAAGTCCAGCAGTAAAATAAACGACTTCCACACCTTCTTCGACCAAGACCAGGAGGAGGTGTCCTCTCCAGAGCTGTGCAACAGATCGGAGAGTCCAGTGTTGGGTCCCAGTGGTCAGGAGGAGCTGGTGAAGCGACTGgcggagctggagctgagccgGGAGCTGCTGGACTCTCTGGGGGAGGATCAGGACTGGTTCGACGAGGACTTCGGTCTGAGTTCTCGGAAGCAGCAGGAGAAGCTGAAGCAGCGGCAGGAGGAGGGGCCGCTCTCCGGCTCGCCCCCGGCCAAAGTCCCGTCCCGACCCCAGCCCCCGCATCCCAAACTGCCCGAGGAACCGGCCATGCTGGTCCCGCACAACGCGCCGGAGGTGGAGAAACTGGTGAGATCCGCCCTGCTGGAGATCTGGACGCACTGCGGCCTCGACCGGGGTCAGCAGAGCCTGGCTGGAGTCCAGAAGCCTCGGCCCTCAGACGGCTTCCTGAGAAACGGCGAGAGGAACGACGAGCAGGAGGCGGAGTTTATCCGCAGCTATAAACAGGCGGTGTTTGACCTGTCGTGGGAAGTGGTCCAGGACATATTTATAGAAGATCCTAATGCTGACCAGCCTCAGTGGGTCAAACCACGGCGTGTTAACTCCTCTTACATCCACAGGATTAACAGCCCCAATGACTTAGCTAAAGTTCAGGCGTTCGTCACTAGCGAGGTTCTAAAGCTCTACGGCCTGAAGAAGGAGCAGAACCACAAAACAGACTGGCAGAAGATGCTGAAATTTGGCCGGAAAAAGCGAGACCGCGTCGATCACATCTTGGTTCAGGAGCTGCATGAGGAGGAGGCTCTGTGGGTGAACTATGACGAAGACGAGCTGTTCGTGAAGATGCAGCTGGCAGACGGGATCTTTGACGCTCTTCTGAAGGACACGACAGAAATCCTCATCCAGATCCAGGAGAAGAGGTCCAAACGGTCCCAGTCCTGACACTGGCCTAAACCGGCCTGAACCGGCCTTCTGCTGAGCGCACGGCTCAACGCTGCTGTAACACCACGTCCACCCCGTCTCACACTCCACACGGATTCAAGGGGGGTTTAGAACATGAtctcaacacactcacacacactcttcatcACTGTGCTGTCAGTTCTTTAGCCTGATCTCCTTCCTGGTCCAGCCTTCTGTTTTCCTGTGGGAGGAGCAGCCACACTGTTTAGCCTCGGTCGCCTCGGTCACGTCCCGAGCCCTGTGGTCCTGTCTGGCTGCTCCAAGCTCCACTGCTGCTAATTCTCTCTCCATGGGCTCCTCTGGGCCCGGTCGATTGgaccttctctctttttctctctctctcgcctttgattttttatttatttgtaattttttacgCAAAAAAAGATCTGCAAAATAAATCTATGAAAATGTATATGTAACTGATTTTAGAAGGTGCAAAAATTGAATTCTAAACTCGTGTAAGCACATGAACTGAATGTGGGAAGCGACGGCACGAAATATGATGTGTTGATTAAAGattaatgctaaaaaaaaaataaaaaaaaaaaaatgtatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80669 lncRNA upstream 166223 49036613 ~ 49037045 (+) True G59855
TU80667 lncRNA upstream 167463 49032837 ~ 49035805 (+) True G59853
TU80608 lncRNA upstream 274462 48928458 ~ 48928806 (+) True G59798
TU80602 lncRNA upstream 277834 48922590 ~ 48925434 (+) True G59793
TU80597 lncRNA upstream 295241 48907715 ~ 48908027 (+) True G59788
TU80712 lncRNA downstream 76242 49345114 ~ 49370251 (+) False lhx4
TU80802 lncRNA downstream 183650 49452522 ~ 49453328 (+) True G59970
TU80804 lncRNA downstream 185557 49454429 ~ 49455103 (+) True G59972
TU80809 lncRNA downstream 190577 49459449 ~ 49460506 (+) True G59976
TU80819 lncRNA downstream 210213 49479085 ~ 49479357 (+) True G59986
XM_022670808.1 mRNA upstream 785056 47998093 ~ 48418212 (+) True cacna2d3
XM_022670809.1 mRNA upstream 785056 47998093 ~ 48418212 (+) False cacna2d3
XM_022670810.1 mRNA upstream 785056 48093612 ~ 48418212 (+) False cacna2d3
XM_007237001.3 mRNA upstream 1269657 47927955 ~ 47933611 (+) True LOC103038409
XM_022670807.1 mRNA upstream 1309313 47880396 ~ 47893955 (+) True il17rb
XM_022670831.1 mRNA downstream 4122 49272994 ~ 49308775 (+) True LOC103029228
XM_007236978.3 mRNA downstream 53406 49322278 ~ 49345475 (+) True lhx4
XM_022670936.1 mRNA downstream 201560 49470432 ~ 49539741 (+) True LOC103028608
XM_007236977.3 mRNA downstream 279772 49548644 ~ 49568835 (+) True sin3b
XM_022670834.1 mRNA downstream 301840 49570712 ~ 49600806 (+) True LOC103028292
TU80616 other upstream 204797 48998160 ~ 48998471 (+) True G59806
TU80591 other upstream 323645 48870167 ~ 48879623 (+) True G59782
TU79888 other upstream 2321377 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 3413114 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 4336430 44852780 ~ 44866838 (+) False LOC103029434
TU80792 other downstream 154644 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 1370622 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 2007328 51276200 ~ 51286140 (+) True G60481
TU81517 other downstream 2013118 51281990 ~ 51286140 (+) False G60481
TU81531 other downstream 2134462 51403334 ~ 51409013 (+) False hdac6

Expression Profile