RNA id: XM_022670886.1


Basic Information

Item Value
RNA id XM_022670886.1
length 2368
RNA type mRNA
GC content 0.53
exon number 17
gene id cdk16
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52069541 ~ 52116270 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTTTAATAGGGGGGGACGCGTTGTCTTCGCAGGCCTGTACTGTACCGCGGCGTTAAGCAACGTTTAGGTAAACACCTCAAATTAGATCTCAGGACTGTCAGCCATGTCCAGGATGTGAAACAGCGCGGCGTCGGGTCGTGTTTAGGGCTGCTTTGTGAGTGTGTCCCTCCCCACCTCTCCGGCTGGGCTGAGTGAGTGACTCCGGATCTATTCGCAGAAGCCCCGGACCGAGCGACTGCTCCGGATTTGGCCAGGCGGAGGGAGCGGGGTAACAGCTGCTGCTCTAAAGGGTTTTGGCGTGTTTGGAGAGAGAGCCTAGCTGACCATGCTGCGCGCCTGGAGGGCGCTGAGAGTCATGGCCGAGGACTACTGGGAGCACACGGCGGCTTTGGGACATTGCTAAGATTACAAGGGCACGACGGGATCTCGTCCACGGggcGACTGAACAGTGGCTGCCCCTCCACCCTCCTCAACTCGGCCCCCCCTGCCCCCTCTGATGGACCGCATGAGGAAGATCAAACGGCAGCTGTCCCTGACGCTGCGGGGGGGCAGCAGTGGGGAGAAGAGCCTGAACGACACCATCAGCTCGCAGGACGCTGGAGCTCACAGTGACTCCGaAATAGTCCATGAAGATGTGAAGATGGGTTCAGATGGTGAAAGCGACCAGGCTTCAGCCACCTCATCCGACGAGGTGCACAGTCCGGTCCGGGTCCGGCTGCGGAACAATCCGGGACGCAAGATTTCCACTGAGgaTATTAATAAGAGGTTGTCTCTGCCAGCTGATATCCGGCTGCCGGATGGTTATCTGGAGAAGTTCAGTTTGAACAGTCCGCTGTTCGATAAGCCGCTGAGCCGGCGGCTCCGCAGAGTCTCTCTGTCGGAGATCGGGTTTGGGAAGTTGGAGACCTACGTAAAACTGGATAAACTAGGAGAGGGCACGTACGCCACGGTGTATAAGGGCCGCAGTAAACTCACCGATAACCTGGTGGCTCTGAAAGAGATCCGGCTGGAACACGAGGAAGGAGCTCCCTGCACTGCCATCAGAGAGGtttctctgctGAAGGATCTGAAGCATGCCAACATCGTGACCCTGCATGACATCATACACACGCAGAAGTCTCTGACGCTCGTGTTTGAGTACCTaGATAAAGATCTGAAGCAGTACCTGGATGACTGTGGGAACTGTATCCACATGCACAACGTTAAGctctTCCTGTTCCAGCTGTTGCGAGGGCTGAACTACTGTCACAGACGCAAAGTCCTCCATCGAGACCTCAAACCCCAAAACCTCCTCATTAACGACCGCGGGGAGCTCAAACTAGCCGACTTCGgtttggcTCGAGCCAAGTCAATTCCTACCAAGACCTACTCTAATGAGGTGGTCACTCTCTGGTACCGCCCCCCGGACATCCTACTGGGAAGCACAGACTATTCAACCCAGATCGACATGTGGGGGGTTGGCTGCATCTTCTATGAGATGGCTACGGGTCGACCGCTGTTTCCAGGGTCAACAGTGGAGGAGGAGCTGCACTTTATCTTCAAACTGCTAGGCACGCCTACAGAGGAAACCTGGCCTGGAATAACCTCCAACGAGGAATTCATCTCCTATAACTATCCCCGGTACCGCGCTGACTGTCTACACAACCACACTCCCCGGCTGGATAATGATGGTGTGGACCTGCTGTCCAAACTGCTTCAGTTTGAAGGAAAGAAGCGCATCTCTGCAGAAGAAGCAATGAGACACTCGTACTTCCACTGCCTGGGAGAGAGAGTTCTCACACTGCCTGACaCTACGTCCATATTTGCACTTCAAAACATTCAGCTGGAGAAGGAGACAAGCATGAGGACGGCCTCCCTATCGGACTCCGAGCTTTTGCAAAGATGCCTAAGGTTCCGGCACACCTTAGtCAACAGCATATCTCAGCGGCAGAGCCTGCTCTTCTGATCGGTtcgatggaggaggaggaggaggaagaggctgAAGATGAAGAGTGAACGAATGAAAGAAGGAGGAAATAAGAGGAGGACGAACGGAGAGAGACGTTTTTATGTGATAACGATGACTATCATGATGTTGAAGATGAAGGGATccctgtttttcatttttcattttttttttttgagtaatttCTGTCATGTGGCATTGTGTCTttagaaagggggaggggggtAAATAGATGTTTACAAGGGAAGACTGAggatcatttttttgtttgtatgtatttatatgttcTGTTTGTGTCAAATGATTATGCACTCCCTTTTTGCCTGTACATGTTACAGTCATACTCTCCTCCCACTCCGTTCTGTCAGTTTTAACACTATAAACGCCGCGAGCAGTCACGTTCAGTCGCCTGCTGACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81806 lncRNA upstream 51465 52017791 ~ 52018077 (+) True G60661
TU81785 lncRNA upstream 137168 51931597 ~ 51932374 (+) True G60652
TU81773 lncRNA upstream 169435 51895972 ~ 51900107 (+) True G60643
TU81774 lncRNA upstream 169435 51896650 ~ 51900107 (+) False G60643
TU81782 lncRNA upstream 219359 51849658 ~ 51850183 (+) True G60649
TU81847 lncRNA downstream 79950 52196220 ~ 52314109 (+) False G60688
TU81848 lncRNA downstream 195042 52311312 ~ 52314109 (+) True G60688
TU81860 lncRNA downstream 202577 52318847 ~ 52328328 (+) True G60696
TU81865 lncRNA downstream 220727 52336997 ~ 52343123 (+) True G60701
TU81880 lncRNA downstream 341242 52457512 ~ 52461465 (+) True G60712
XM_022670968.1 mRNA upstream 54775 51994143 ~ 52014767 (+) True LOC103046554
XM_022670880.1 mRNA upstream 183471 51852024 ~ 51886071 (+) False bcap31
XM_022670879.1 mRNA upstream 183471 51852025 ~ 51886071 (+) True bcap31
XM_007245851.3 mRNA upstream 218928 51836378 ~ 51850614 (+) True slc35a2
XM_022670878.1 mRNA upstream 237271 51828354 ~ 51832271 (+) True LOC111192705
XM_007245819.3 mRNA downstream 9828 52126098 ~ 52132072 (+) True tsr2
XM_007245833.3 mRNA downstream 352121 52468391 ~ 52478268 (+) True LOC103029799
TU81766 other upstream 303922 51765091 ~ 51765620 (+) False otud5
TU81531 other upstream 660529 51403334 ~ 51409013 (+) False hdac6
TU81516 other upstream 783402 51276200 ~ 51286140 (+) True G60481
TU81517 other upstream 783402 51281990 ~ 51286140 (+) False G60481
XR_002650102.1 other upstream 1417268 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile