RNA id: XM_022670919.1


Basic Information

Item Value
RNA id XM_022670919.1
length 3898
RNA type mRNA
GC content 0.48
exon number 27
gene id adgrd1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32828168 ~ 32915531 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGCGCGCTTACACTCAGCGCAGCACGAGGCAGTTGTCAGTTATCGATAGCGCTCCTCACAGCGAGCTGGCGGAATTTCTCACtgtttttttggacaaaaaGGATTAAAACTTTGTGGGGAAAAAGTTGAAAACGATAATTTAAGGATGTATAAGATTTGTTCGGGCGGTAGAGTTATGATTTAGAGCTGTTTTTAAGAAcatgtaataattttttttgtttttctgaagaAAAAACACCATTAGCTTTAAAAGTTAGCTTAAATACAAATGACTCGCGCGAGCTCGAGACTCGTTGCATAGCAGCAAACCGTCCATTTAAACATCTTTCACTTTTTCTCAGTAAATTCAgcataaaactgcattttttttatcatcatggACTTTTTGTTCCGAGTTTTAAACTTGTCTGCTGTTGTGAACATCCTTCAGgaGTTTGCTGTTTTATATTCACAGGTTATTGGTGACAGTGTTGTGCCGTCCAAGCATCCAGGCCTGGATGTGCTGGCTACTGCCTCACACTACTGGCCACTGGATGCGGTGGATGGACTGCGCAGCCTGCGGGATCAAATTGGGAATAGAACAGGTCATGTTAATGGAACTAATATAACACTAAGAATCCACAACCACACTGTCCTGCCTTACCATAACTCTTCCTCTGTGTACACCAATGACTCTGCCTACACTAACATTTCCGTCTCTGTAGATATCGTAGAGGGAGTGATGAATAAAGGCATTTATCTGAATGGAGACAGAGGAGCCACTTTTCTCCACTTTGGCAACTACAAAAACTCCTGCATCAGCGACCCCACGCTGTGCGGACCGCAGGGTGTGACATTCTCGTTCTTCTGGAAGAATCAGGAGACGCAGTCACGTTTTGCATTCGCATCAGGAGGAAAGATCATATCTAATGGCTTCTCTGTGTTCACTAACCCGATGGGAGGATACGTAGAGATCTATACAAGAGGAAACTCCAGACGCTGGAAAGCTAAAATTAAGCCACCAGGTCCTTTCTGGACTCACATTCTGTTCACATGGACCATGAAGGATGGCTTGAAGGTCTACATAAATGGCACCTTCAACAGCAGTGATGAGGTGGGAAGTGTGTCGGAAAACAACTACGACGACACCTACACTGACCTGGTGATTGGAACCGGAAATGTGCCGACATATGGACACATTGTAACTGGAGCCTTTGATGAGTTTGTCATTTGGGAGAGAGCTCTTTCGCCCAGGGAGATCTGTCTCTACTACAAAGCAGCTAGagCTGATGACACAGTTTTTCCACCAACTACTGAAACTCCATCCTACGTCCGCACTACAACTGATAGTATTGGTCTGCAGgCAGTCACTTCACCTCATCATGCAGTGCTTTCTAACCTGAGTGAGGATGTGCCTGGCGCTGAGGCGGCAGCGTCCATGCCTGTTATGGCTCTCCTCCAGTCTCTGCCCTTTAGCCTGCCCAACAAGACCATTCCTCAGGACTCAGCTCACAATCTCACACAGttacaggCAGTCACTTCACCTCATCATGCAGTGCTTTCTAACCTGAGTGAGGATGTGCCTGGCGCTGAGGCGGCAGCGTCCATGCCTGTTATGGCTCTCCTCCAGTCTCTGCCCTTTAGCCTGCCCAACAAGACCATTCCTCAGGACTCAGCTCACAATCTCACACAGTCATTGTTGAAGAGTGTAGATGAGGTGATGTCCTCCAGTAACTGGAAGGAAGATGAGCAGTGGACTCCTGTGGTCAGTGGACTTATAGACACTGTGGATAAAGTCATGGTGCACATGGTGTCCAAACTCCAGTCTAAATCAGACATGCCTGTCACAATTGGTGGAAAGAGTTATGTAGCAGATTACTCTCTGATGAAGATCCCTCAAAACTACAACCTGTCCAGCTACCGGTTTCCTATGCAGGGCAAGAACTACATCTCAGTACCAGGAGAGGCTTTTGCCATGCAGAcCCAGACCACCATTGTGGGCCTCTTCTACCATAATATGCACAACTACTACAAACAGATCAACCCCCTGCGAACCAGgATCAACGAGGCTGCGGACTATAAAGACTATAAGATCCAGGTGGCCAGTTACCTGATCTCTCTAAAGGTGGAGCCCTTGCCTGCCCTGTCCTTCAACCTGTCCACAGAGCCGCTCATCAGGATTGTGCTAACACACCAGCTGAGCAAAGAGCAGCAGCTTCAGGCTTCCAATCAAAGCAACAAAGTCTTCCTCTACTGTGGCTTCCTGGACTACAGctcTAAGGAAGGTGTATGGTCCAATGAGGGGTGCATGAGAACTGGAGGCAATCTTTCGTACTCCATCTGTGTGTGTAACCACCTGACCAACTTCGCCATCCTCATGCAGGTCGTTCCTGTGGAGCTCGCTAAAAGCCATCAGATAGCGCTCTCCACTATTACCTATGTGGGTTGCTCCATCTCCATCTTCTGCCTAGCCATCACCCTGGTCACCTTTGCCGTGCTCTCgTCCGTGAGCACTATCCGAAATCAGCGCTACCATATCCATGCTAACCTTTCCTTCGCCATCCTGGTGGCCCAGATCCTCCTACTCATCAGCTTCCGCTTTGAGCCCGGCACGATGCCCTGTAAGGTGATGGCGGTGCTGCTGCACTTCTTCTTCCTGTGTGCGTTTGCCTGGATGTTGGTGGAGGGGCTGCACCTCTACAGCATGGTTGTCAAAGTGTTTGGCTCTGAGGGCAGCAAGCACTTCTACTATTATGGCATCGGCTGGGGGTCTCCGCTGGTCATATGCGTGGTGTCCATGACGTCATCTCTGGGAAGTTATGGGGAGGTTGGAAACTGCTGGCTGTCTCTCCAGAATGGAGCAATTTGGGCTTTCGTAGCACCTGCACTGTTTGTCATAATGgtGAACATTGGTATCCTTATTGCTGTTACAAGAATTATCTCCAGAATCAGCGCAGAGAACTATAAAGTGCATGGAGATGCAAATTCTGTCAAACTAACTGCTAAAGCAGTAGCAGTACTCTTGCCTATCCTGGGCATTTCGTGGATCTTCGGGGTTCTGGCTGTGAACGACCACTCCCTGCTCTTCCAGTACATGTTTGCCGCCTTCAATTCTCTACAGGGcttcttcatcttcctcttccaCTGTCTGCTGAACTCTGAGGTGAGAGCAGCTTTCAAGCACAAGACCAAGGTGTGGTCTTTGACCAGCAGCTCCATCCGCAACATCAACGTCAAGCCTTTCAACTCAGACATTATGAATGGCAACAAAGGGGGCGTGAGCCCGACGAAAATGCACACGTGGGACAAAAGCACTAACTCGGCCAATCGCATCGACCTTTCAGCAGTCTAAGCATCACATAGTGGACGACGGACAGCTACTGATCAAAGACCTTAAACGGACAGTGAAAGTCAAACCTCTGCTCAATCACACCGGCTGTTTCAGCCACCGTTCTTTTTCCACAGTGACTCAAAGCTTTTTACGAAGTTCTCACAGGCCTGGGGaaagagcgagcgagcgagggaAAGGAAAGACTGCAGGCTTTCACAGCTGCTAGCAGACTTACGCTCGGCGCTCTGATGTCACTCTCTCCGCCTTTGCTCTGTGAAGATAAACAGAGTTTTAGACAGTAATAAGTTGCAGATGAAAACACAAGACTCATTGTGTTGGATGAATGTGCTCTGTTCAGTGTTATAAACTATAAAACGTTCTTCTTGTAACTCTAGTAACTGCTGGATTCCACTGCTGTCTGTTACTTGACACTAAACTGTGACACAAGATGCTGAGGAAGGACGAGGAGTATCCTGTTTCGCTGCCACACTCTCCTGGGACCTGCTAcactatgtggacaaaagtgttgggacacctgcttattcattgttgattcttctgaaatcaagggtattaaaaatactt

Function

GO: NA

KEGG:

id description
K08465 ADGRD1, GPR133; adhesion G-protein coupled receptor D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75631 lncRNA downstream 1296 32824840 ~ 32826872 (-) True G56110
TU75599 lncRNA downstream 383529 32444401 ~ 32444639 (-) True G56085
TU75603 lncRNA downstream 385715 32437543 ~ 32442453 (-) True G56089
TU75447 lncRNA downstream 575007 32252943 ~ 32253161 (-) True G55952
TU75432 lncRNA downstream 585629 32241421 ~ 32242539 (-) True G55938
TU75683 lncRNA upstream 262664 33178195 ~ 33178579 (-) True G56137
TU75702 lncRNA upstream 304961 33220492 ~ 33226588 (-) True G56148
TU75740 lncRNA upstream 339477 33255008 ~ 33336096 (-) True G56172
TU75757 lncRNA upstream 443234 33358765 ~ 33366613 (-) True G56186
TU75760 lncRNA upstream 461628 33377159 ~ 33380627 (-) True G56189
XM_022670514.1 mRNA downstream 7874 32817117 ~ 32820294 (-) True LOC111192669
XM_022670918.1 mRNA downstream 26008 32772027 ~ 32802160 (-) True LOC103021360
XM_015602404.2 mRNA downstream 57498 32735413 ~ 32770670 (-) False ep400
XM_022670511.1 mRNA upstream 7539 32923070 ~ 33133867 (-) True rimbp2
XM_007237386.3 mRNA upstream 233543 33149074 ~ 33177650 (-) True LOC103023237
XM_007237387.3 mRNA upstream 233543 33149074 ~ 33177647 (-) False LOC103023237
XM_022670519.1 mRNA upstream 264460 33179991 ~ 33188623 (-) True piwil1
XM_007237389.3 mRNA upstream 340188 33255719 ~ 33258251 (-) True fzd10
TU75652 other downstream 26015 32781276 ~ 32802153 (-) False LOC103021360
TU74381 other downstream 4227658 28598278 ~ 28600510 (-) False LOC103031600
TU74384 other downstream 4404213 28417733 ~ 28423955 (-) True LOC111192657
TU74195 other downstream 4670719 28153421 ~ 28157449 (-) True G55023
TU74086 other downstream 5097089 27728711 ~ 27731079 (-) True G54947
XR_002650076.1 other upstream 233543 33149074 ~ 33177650 (-) False LOC103023237
trnaa-agc_13 other upstream 444838 33360369 ~ 33360441 (-) True trnaa-agc_13
TU76301 other upstream 2178020 35093551 ~ 35108393 (-) True LOC103038119
XR_002650079.1 other upstream 2369891 35285422 ~ 35293421 (-) False acaa2
TU76360 other upstream 2380815 35296346 ~ 35299589 (-) False c6h22orf39

Expression Profile