RNA id: XM_022670930.1


Basic Information

Item Value
RNA id XM_022670930.1
length 2823
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC103034037
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41493604 ~ 41513087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taatgttttaagAATTTCCAGAATGTTACCTCAACCTTATGTTCTGTTCTTATGAATGTTCTGGTAAATTGAAACTATTCAGTTTTTTATATGAATGTTCCCAATGCCCAATTAACATTACTGTGGAAACATTTGCTCCTAACATTAAGGGAACTTTTGTTACTGTGGGAATATTTGTTATCATTGAAGGAACTTTTGAATGAAgttgtgaaatgtttttagGATGTTCTATTTATGTTACTGTGGGAACATTTGTTCCTAACAAAGTTTATATGAAGTTGTGAAATGTTTTTTAGAATGTTTCATTAATGTTACTGTATGAACATTTACTCCTAACTTTGGGGGGAATTTTTTAATGTGGTCAGGGAACTATTTTAGCATGTTCCATTAATGTTACTGTGGGAACATGTGCTCCTAACACTAAGGGAACTACTTAGGGAATGTAGTCGGGGAACGTAGATTTTAAATTGTTATATTAACGTTTCTGTGAGAGTGTTTGCTCCTTACATTTGGAGAACTTTTAGATCCTCTATTAGCTGTGATAAAACAGTGAGTGTTCCTCAGGTAGTGTTTAAACACCTGTAAATATCTGCAGTCACTATAATTTATGTTGTGGTCATTTATTGATGTTTTAGATCATGTAATCTTCTCAAATCAGATATCTGCATCACTCTCAGACAACAAAAGGAAAGATATCTTCAACTTCCTGGACCATAGTACGCAATGAAAGAACCCTTCAAGTCCTGTCAACTTCAACTTCAACCATGTCTTCAAGTTTCCTGAAGCTTCCGAAAACTGATCTTGACTTGACATGGAATATCTCTCACGACACTATAAGCAGGAaaagaaaagctttttttttattctgttccgAATTGTTTGGGTAGATGTAAGAAGTTACGTTTTGGATAAGTATGCCCAGAGAAGGTGAAGACCCCACCAGTTCCTCTCAACATTTTGCCATATATCCTCCATACCAGACATCGGTAAGAAAAATTGTGCACGGTCGCATAAATCCGCATAAATCCTGAAACTGGCTACTCATTATTGTCCACAGTGCCCATTACAATGGGCGACCGACCAGTCTGCACTGATGCGTACAAAACTGACCAAACTGACAGCGACAAAACCCAACGGCATGAACCATTTGCATCTCAAAAGCAAGCAAACAATCTGTCCACATTTCAGAATCTCCTCGAATCCTCCTGGATGTCCGCCAGCTTCCACTGCTCGATTTTAGCCCTTGGCAGCGAGGAGATGGCCTCTTTTGCAAAACCTCAAGCTTCTGATTTTGCCGTATCTGGCTTGCTACTTTACTCTCCCGGAATATCTCTTCCCATCGGAAGGTCACAGCATAATTCTCTTCCCCTGGGCAGTTTCTTGCACGCTCGACGCAAACGTGAGCTGCAACTCAGTAACTCACACAAATTGGTCCAGGCTGGCAACATCCCTTGTGTTCTGTCACGGGGAGAGCATGTGGGTAATGCAAATCCTTTCGCAGGTGGGTTTCCAGCGCCTGTGTGTTCATCTAAGCAGAATTCAGATAAGAAGTCGCATGCCGCAACTGCATGGCTTGTAGAAGCCCACAGATCTGCCTTAGATGGACAAGCCTACAAAACTAGCATGGCACACCAGGCGCCTCATCTTGAAAGACTTGAGATGAAAGGGAATGTGATGATTAGACATCAGGTGGATCCAGAAGACAAGAAAACATTCAAGAAGAACAGCCACTTCAATAAAGATCCAAGGCAGGTAGATAGTCCCAGAAGGTCCAATGGAAATCAGACAGGGCCCACTGGAAGGAAACCCAATGGTGTGCATTGGAGTTCTCGGCTTGATCCGGGATGTTCTACAGCTTTCACAAGAAGCGACACATTCCAAGCAATTACCAGACACAGTGGAAGCACTAGTacaccacatcccaaagctgcACCATCAAGACAACATCTTTTGACATGTGGGAATGAGCTTGATGCAGTGGCAGCAACCCCACAGATTCACCTCTTCACCACTGATGAGGAGATAGCAAAAagGTTCCAGGCTCTGTACCAGTTCCATCTGCTCCAGCGATGCTTTAGAAGATGGTGTGCTGGTCTCAGTTCTCACACTAAAGCCTGGCTTTATAACCAGAGGAGGATTCTCAGTAAAGCTCTGCTTGCTCTCCAGCGGGCTGTTCTGCTCCAGCGTGCTCAGACAGACACTGCAGAGATGGCCCAGAGAGCGCAAACGCTAGCACAGGCTTTTCACCGGTGGAAAGATGTCTACGAGAGGAGACAGCAGGCGAGGCTGGGCTCAGACAGTTGCACTCGAGGCCACGTTGTTGCATTAAGAAGAAGACTTGTTAAGGCCAGTGATTCACTACCTCTGAGGATCACCTATTGTGTTTGGAGGAACCACGTCCAGAGCCAGCGAATCCACAGAGCATCCGTGATTCACCACCATCTGTCGGTTCTGTATAAGCACTGGTTGCTGTGGAGACGGGCCTGGATGAAGCAGATCTCCAGATCCCAGCAGATGCAGCGGGCTCGGGCGTGGAGGGAGCAGAGGCTGCGTATCAGGACCTGGACTATGTGGCTGTGTGTTTGGAAGAAAAGACAGCAAACCAGACACCTGCACAGGCTGGCACTTCAGCGGTGGAATCAGCACACCCAGAGGGTCCGGTTGATGCATCTTGCACAGGCTGTGGAGCAGCTTCGTTCCATTCGTTTACTATCTGGCAAGTGCACTGAGGAAAGGCTGCTAAGGCAATGGATCACAGAAATGATGGATGGCTTTGTGGCTCCTCAGCAACATTCAGGAGATGGAGACAGGCGAAGGAGGTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78249 lncRNA downstream 40622 41449213 ~ 41452982 (-) True G58031
TU78108 lncRNA downstream 731432 40761495 ~ 40762172 (-) True G57920
TU78113 lncRNA downstream 737732 40748741 ~ 40755872 (-) False tprg1l
TU78114 lncRNA downstream 745065 40741514 ~ 40748539 (-) True G57925
TU78104 lncRNA downstream 828840 40664520 ~ 40664764 (-) True G57916
TU78389 lncRNA upstream 339502 41852589 ~ 41944829 (-) True G58145
TU78401 lncRNA upstream 363176 41876263 ~ 41934574 (-) True G58152
TU78395 lncRNA upstream 387023 41900110 ~ 41903678 (-) True G58149
TU78411 lncRNA upstream 397696 41910783 ~ 41911110 (-) True G58159
TU78442 lncRNA upstream 538863 42051950 ~ 42052535 (-) True G58185
XM_022670701.1 mRNA downstream 57126 41405371 ~ 41436478 (-) True clcn6
XM_007247916.3 mRNA downstream 196911 41281161 ~ 41296693 (-) False plod1
XM_022670697.1 mRNA downstream 196911 41281161 ~ 41296693 (-) True plod1
XM_007247915.3 mRNA downstream 196913 41281161 ~ 41296691 (-) False plod1
XM_007247914.3 mRNA downstream 215126 41247386 ~ 41278478 (-) True mfn2
XM_007247928.3 mRNA upstream 3878 41516965 ~ 41527890 (-) True pex10
XM_007247932.3 mRNA upstream 466470 41979557 ~ 42034244 (-) False LOC103035734
XM_015605499.2 mRNA upstream 466470 41979557 ~ 42034243 (-) True LOC103035734
XM_007247937.3 mRNA upstream 574301 42087388 ~ 42177716 (-) True LOC103037059
XM_022670710.1 mRNA upstream 574301 42087388 ~ 42177716 (-) False LOC103037059
TU78238 other downstream 95126 41396086 ~ 41398478 (-) True G58022
trnaw-cca_41 other downstream 887504 40606029 ~ 40606100 (-) True trnaw-cca_41
TU77868 other downstream 1314538 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 1374509 40117789 ~ 40119095 (-) True G57727
TU77625 other downstream 1930713 39560460 ~ 39562891 (-) False LOC103030299
TU78780 other upstream 1589783 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 2169237 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 2854813 44367900 ~ 44368368 (-) True G58649
TU79103 other upstream 2961072 44474159 ~ 44477666 (-) True G58678
TU79140 other upstream 3107220 44620307 ~ 44622074 (-) False snrnp200

Expression Profile