RNA id: XM_022670931.1


Basic Information

Item Value
RNA id XM_022670931.1
length 1032
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC111192716
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43161235 ~ 43162382 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCACCCACCCAGCACCAATCATCTCCCAATCACTATCCTACCACCACACAATCATCTCCCAGTCACCACCCAATCACAATCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACACAATCATCTCCCAGTCACCACCCAATCACAATCCAATCATTACCAATCATCTCCCAATCACTATCCTACCACCACCCAATCACCGTCCAGTCACCACCCAATCACAATCCAATCATCACCCAGTCACAATCCAATCATCTCCCAATCACTATCCTACCACACCCCAATCATTTCCCAATCACCACCCTACCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCACCACCCAATCACAATCCAATCATCTCCCAATCACCATCCTACCACCACCCAATCACCACCCCATCACCACCCAATCACAATCCAATCATCTCCCAATCACTATCCTACCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCACAATCCAATCATCTCCCAATCACATCCTACTACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTTCAATCATCATCCAATCATCTCCCAAACACAGTCCTACCACCACCCAATCACAATCTAATCATCACCCACTCATCTCCCAATCACATCCTATTACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTCATAAACACAGTCATGCCACCACCCAATCATCTTCCAGTCACCACCCAATCACAGCAGAGGCACTGCGCACTCCTCTGTCAGGGGCGGAGTTTGTGGAGTATCAGCGCTGCAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78829 lncRNA downstream 21952 43136244 ~ 43139283 (-) True G58470
TU78771 lncRNA downstream 68322 43092558 ~ 43092913 (-) True G58430
XR_002650117.1 lncRNA downstream 207851 42952416 ~ 42953384 (-) True LOC111192735
TU78743 lncRNA downstream 226038 42922459 ~ 42935197 (-) True G58411
TU78733 lncRNA downstream 287475 42872653 ~ 42873760 (-) True G58404
TU78837 lncRNA upstream 6174 43168556 ~ 43169692 (-) True G58476
TU78836 lncRNA upstream 7752 43170134 ~ 43171136 (-) True G58475
TU78851 lncRNA upstream 116410 43278792 ~ 43335618 (-) True G58490
TU78873 lncRNA upstream 211954 43374336 ~ 43395114 (-) True G58509
TU78874 lncRNA upstream 284134 43446516 ~ 43446724 (-) True G58510
XM_015605513.2 mRNA downstream 73364 43063287 ~ 43087871 (-) False map3k12
XM_007247971.3 mRNA downstream 73364 43063287 ~ 43087871 (-) True map3k12
XM_007247995.2 mRNA downstream 121249 43030331 ~ 43039986 (-) True LOC103028227
XM_007247961.3 mRNA downstream 132158 43017361 ~ 43029077 (-) True LOC103043615
XM_007247963.3 mRNA downstream 153001 42996976 ~ 43008234 (-) True LOC103044132
XM_022670726.1 mRNA upstream 24878 43187260 ~ 43340380 (-) True ralgps1
XM_022670725.1 mRNA upstream 24878 43187260 ~ 43340373 (-) False ralgps1
XM_007247978.3 mRNA upstream 183117 43345499 ~ 43366461 (-) True zbtb34
XM_015605511.2 mRNA upstream 295977 43458359 ~ 43539305 (-) False lmx1b
XM_015605510.2 mRNA upstream 295977 43458359 ~ 43535936 (-) True lmx1b
TU78780 other downstream 53612 43102870 ~ 43107623 (-) True G58435
TU78238 other downstream 1762757 41396086 ~ 41398478 (-) True G58022
trnaw-cca_41 other downstream 2555135 40606029 ~ 40606100 (-) True trnaw-cca_41
TU77868 other downstream 2982169 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 3042140 40117789 ~ 40119095 (-) True G57727
TU78909 other upstream 519942 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 1205518 44367900 ~ 44368368 (-) True G58649
TU79103 other upstream 1311777 44474159 ~ 44477666 (-) True G58678
TU79140 other upstream 1457925 44620307 ~ 44622074 (-) False snrnp200
TU79350 other upstream 1898727 45061109 ~ 45061674 (-) True G58868

Expression Profile